Characterization of Reachable Attractors Using Petri Net Unfoldings

International audienceAttractors of network dynamics represent the long-term behaviours of the modelled system. Their characterization is therefore crucial for understanding the response and differentiation capabilities of a dynamical system. In the scope of qualitative models of interaction networks, the computation of attractors reachable from a given state of the network faces combinatorial issues due to the state space explosion. In this paper, we present a new algorithm that exploits the concurrency between transitions of parallel acting components in order to reduce the search space. The algorithm relies on Petri net unfoldings that can be used to compute a compact representation of the dynamics. We illustrate the applicability of the algorithm with Petri net models of cell signalling and regulation networks, Boolean and multi-valued. The proposed approach aims at being complementary to existing methods for deriving the attractors of Boolean models, while being %so far more generic since it applies to any safe Petri net

Abstract Interpretation with Unfoldings

We present and evaluate a technique for computing path-sensitive interference conditions during abstract interpretation of concurrent programs. In lieu of fixed point computation, we use prime event structures to compactly represent causal dependence and interference between sequences of transformers. Our main contribution is an unfolding algorithm that uses a new notion of independence to avoid redundant transformer application, thread-local fixed points to reduce the size of the unfolding, and a novel cutoff criterion based on subsumption to guarantee termination of the analysis. Our experiments show that the abstract unfolding produces an order of magnitude fewer false alarms than a mature abstract interpreter, while being several orders of magnitude faster than solver-based tools that have the same precision.Comment: Extended version of the paper (with the same title and authors) to appear at CAV 201

Unfolding-based Partial Order Reduction

Partial order reduction (POR) and net unfoldings are two alternative methods to tackle state-space explosion caused by concurrency. In this paper, we propose the combination of both approaches in an effort to combine their strengths. We first define, for an abstract execution model, unfolding semantics parameterized over an arbitrary independence relation. Based on it, our main contribution is a novel stateless POR algorithm that explores at most one execution per Mazurkiewicz trace, and in general, can explore exponentially fewer, thus achieving a form of super-optimality. Furthermore, our unfolding-based POR copes with non-terminating executions and incorporates state-caching. Over benchmarks with busy-waits, among others, our experiments show a dramatic reduction in the number of executions when compared to a state-of-the-art DPOR.Comment: Long version of a paper with the same title appeared on the proceedings of CONCUR 201

Back in Time Petri Nets

11th Int. Conf. on Formal Modeling and Analysis of Timed Systems (FORMATS'13) July 2013 Buenos AiresInternational audienceThe time progress assumption is at the core of the semantics of real-time formalisms. It is also the major obstacle to the development of partial-order techniques for real-time distributed systems since the events are ordered both by causality and by their occurrence in time. Anyway, extended free choice safe time Petri nets (TPNs) were already identi ed as a class where partial order semantics behaves well. We show that, for this class, the time progress assumption can even be dropped (time may go back in case of concurrency), which establishes a nice relation between partial-order semantics and time progress assumption

Automata-theoretic and bounded model checking for linear temporal logic

In this work we study methods for model checking the temporal logic LTL. The focus is on the automata-theoretic approach to model checking and bounded model checking. We begin by examining automata-theoretic methods to model check LTL safety properties. The model checking problem can be reduced to checking whether the language of a finite state automaton on finite words is empty. We describe an efficient algorithm for generating small finite state automata for so called non-pathological safety properties. The presented implementation is the first tool able to decide whether a formula is non-pathological. The experimental results show that treating safety properties can benefit model checking at very little cost. In addition, we find supporting evidence for the view that minimising the automaton representing the property does not always lead to a small product state space. A deterministic property automaton can result in a smaller product state space even though it might have a larger number states. Next we investigate modular analysis. Modular analysis is a state space reduction method for modular Petri nets. The method can be used to construct a reduced state space called the synchronisation graph. We devise an on-the-fly automata-theoretic method for model checking the behaviour of a modular Petri net from the synchronisation graph. The solution is based on reducing the model checking problem to an instance of verification with testers. We analyse the tester verification problem and present an efficient on-the-fly algorithm, the first complete solution to tester verification problem, based on generalised nested depth-first search. We have also studied propositional encodings for bounded model checking LTL. A new simple linear sized encoding is developed and experimentally evaluated. The implementation in the NuSMV2 model checker is competitive with previously presented encodings. We show how to generalise the LTL encoding to a more succint logic: LTL with past operators. The generalised encoding compares favourably with previous encodings for LTL with past operators. Links between bounded model checking and the automata-theoretic approach are also explored.reviewe

Efficient Trace Encodings of Bounded Synthesis for Asynchronous Distributed Systems

The manual implementation of distributed systems is an error-prone task because of the asynchronous interplay of components and the environment. Bounded synthesis automatically generates an implementation for the specification of the distributed system if one exists. So far, bounded synthesis for distributed systems does not utilize their asynchronous nature. Instead, concurrent behavior of components is encoded by all interleavings and only then checked against the specification. We close this gap by identifying true concurrency in synthesis of asynchronous distributed systems represented as Petri games. This defines when several interleavings can be subsumed by one true concurrent trace. Thereby, fewer and shorter verification problems have to be solved in each iteration of the bounded synthesis algorithm. For Petri games, experimental results show that our implementation using true concurrency outperforms the implementation based on checking all interleavings