27 research outputs found

    Image processing methods for human brain connectivity analysis from in-vivo diffusion MRI

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    In this PhD Thesis proposal, the principles of diffusion MRI (dMRI) in its application to the human brain mapping of connectivity are reviewed. The background section covers the fundamentals of dMRI, with special focus on those related to the distortions caused by susceptibility inhomogeneity across tissues. Also, a deep survey of available correction methodologies for this common artifact of dMRI is presented. Two methodological approaches to improved correction are introduced. Finally, the PhD proposal describes its objectives, the research plan, and the necessary resources

    Learning Inference Models for Computer Vision

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    Computer vision can be understood as the ability to perform 'inference' on image data. Breakthroughs in computer vision technology are often marked by advances in inference techniques, as even the model design is often dictated by the complexity of inference in them. This thesis proposes learning based inference schemes and demonstrates applications in computer vision. We propose techniques for inference in both generative and discriminative computer vision models. Despite their intuitive appeal, the use of generative models in vision is hampered by the difficulty of posterior inference, which is often too complex or too slow to be practical. We propose techniques for improving inference in two widely used techniques: Markov Chain Monte Carlo (MCMC) sampling and message-passing inference. Our inference strategy is to learn separate discriminative models that assist Bayesian inference in a generative model. Experiments on a range of generative vision models show that the proposed techniques accelerate the inference process and/or converge to better solutions. A main complication in the design of discriminative models is the inclusion of prior knowledge in a principled way. For better inference in discriminative models, we propose techniques that modify the original model itself, as inference is simple evaluation of the model. We concentrate on convolutional neural network (CNN) models and propose a generalization of standard spatial convolutions, which are the basic building blocks of CNN architectures, to bilateral convolutions. First, we generalize the existing use of bilateral filters and then propose new neural network architectures with learnable bilateral filters, which we call `Bilateral Neural Networks'. We show how the bilateral filtering modules can be used for modifying existing CNN architectures for better image segmentation and propose a neural network approach for temporal information propagation in videos. Experiments demonstrate the potential of the proposed bilateral networks on a wide range of vision tasks and datasets. In summary, we propose learning based techniques for better inference in several computer vision models ranging from inverse graphics to freely parameterized neural networks. In generative vision models, our inference techniques alleviate some of the crucial hurdles in Bayesian posterior inference, paving new ways for the use of model based machine learning in vision. In discriminative CNN models, the proposed filter generalizations aid in the design of new neural network architectures that can handle sparse high-dimensional data as well as provide a way for incorporating prior knowledge into CNNs

    Intelligent video surveillance

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    In the focus of this thesis are the new and modified algorithms for object detection, recognition and tracking within the context of video analytics. The manual video surveillance has been proven to have low effectiveness and, at the same time, high expense because of the need in manual labour of operators, which are additionally prone to erroneous decisions. Along with increase of the number of surveillance cameras, there is a strong need to push for automatisation of the video analytics. The benefits of this approach can be found both in military and civilian applications. For military applications, it can help in localisation and tracking of objects of interest. For civilian applications, the similar object localisation procedures can make the criminal investigations more effective, extracting the meaningful data from the massive video footage. Recently, the wide accessibility of consumer unmanned aerial vehicles has become a new threat as even the simplest and cheapest airborne vessels can carry some cargo that means they can be upgraded to a serious weapon. Additionally they can be used for spying that imposes a threat to a private life. The autonomous car driving systems are now impossible without applying machine vision methods. The industrial applications require automatic quality control, including non-destructive methods and particularly methods based on the video analysis. All these applications give a strong evidence in a practical need in machine vision algorithms for object detection, tracking and classification and gave a reason for writing this thesis. The contributions to knowledge of the thesis consist of two main parts: video tracking and object detection and recognition, unified by the common idea of its applicability to video analytics problems. The novel algorithms for object detection and tracking, described in this thesis, are unsupervised and have only a small number of parameters. The approach is based on rigid motion segmentation by Bayesian filtering. The Bayesian filter, which was proposed specially for this method and contributes to its novelty, is formulated as a generic approach, and then applied to the video analytics problems. The method is augmented with optional object coordinate estimation using plain two-dimensional terrain assumption which gives a basis for the algorithm usage inside larger sensor data fusion models. The proposed approach for object detection and classification is based on the evolving systems concept and the new Typicality-Eccentricity Data Analytics (TEDA) framework. The methods are capable of solving classical problems of data mining: clustering, classification, and regression. The methods are proposed in a domain-independent way and are capable of addressing shift and drift of the data streams. Examples are given for the clustering and classification of the imagery data. For all the developed algorithms, the experiments have shown sustainable results on the testing data. The practical applications of the proposed algorithms are carefully examined and tested

    Irish Machine Vision and Image Processing Conference Proceedings 2017

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    Connected Attribute Filtering Based on Contour Smoothness

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    Medical image analysis methods for anatomical surface reconstruction using tracked 3D ultrasound

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    The thesis focuses on a study of techniques for acquisition and reconstruction of surface data from anatomical objects by means of tracked 3D ultrasound. In the context of the work two experimental scanning systems are developed and tested on both artificial objects and biological tissues. The first system is based on the freehand ultrasound principle and utilizes a conventional 2D ultrasound transducer coupled with an electromechanical 3D position tracker. The main properties and the basic features of this system are discussed. A number of experiments show that its accuracy in the close to ideal conditions reaches 1.2 mm RMS. The second proposed system implements the sequential triggered scanning approach. The system consists of an ultrasound machine, a workstation and a scanning body (a moving tank filled with liquid and a transducer fixation block) that performs transducer positioning and tracking functions. The system is tested on artificial and real bones. The performed experiments illustrate that it provides significantly better accuracy than the freehand ultrasound (about 0.2 mm RMS) and allows acquiring regular data with a good precision. This makes such a system a promising tool for orthopaedic and trauma surgeons during contactless X-ray-free examinations of injured extremities. The second major subject of the thesis concerns development of medical image analysis methods for 3D surface reconstruction and 2D object detection. We introduce a method based on mesh-growing surface reconstruction that is designed for noisy and sparse data received from 3D tracked ultrasound scanners. A series of experiments on synthetic and ultrasound data show an appropriate reconstruction accuracy. The reconstruction error is measured as the averaged distance between the faces of the mesh and the points from the cloud. Dependently on the initial settings of the method the error varies in range 0.04 - 0.2% for artificial data and 0.3 - 0.7 mm for ultrasound bone data. The reconstructed surfaces correctly interpolate the original point clouds and demonstrate proper smoothness. The next significant problem considered in the work is 2D object detection. Although medical object detection is not integrated into the developed scanning systems, it can be used as a possible further extension of the systems for automatic detection of specific anatomical structures. We analyse the existent object detection methods and introduce a modification of the one based on the popular Generalized Hough Transform (GHT). Unlike the original GHT, the developed method is invariant to rotation and uniform scaling, and uses an intuitive two-point parametrization. We propose several implementations of the feature-to-vote conversion function with the corresponding vote analysis principles. Special attention is devoted to a study of the hierarchical vote analysis and its probabilistic properties. We introduce a parameter space subdivision strategy that reduces the probability of vote peak omission, and show that it can be efficiently implemented in practice using the Gumbel probability distribution
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