Advanced parallel magnetic resonance imaging methods with applications to MR spectroscopic imaging

Parallel magnetic resonance imaging offers a framework for acceleration of conventional MRI encoding using an array of receiver coils with spatially-varying sensitivities. Novel encoding and reconstruction techniques for parallel MRI are investigated in this dissertation. The main goal is to improve the actual reconstruction methods and to develop new approaches for massively parallel MRI systems that take advantage of the higher information content provided by the large number of small receivers. A generalized forward model and inverse reconstruction with regularization for parallel MRI with arbitrary k-space sub-sampling is developed. Regularization methods using the singular value decomposition of the encoding matrix and pre-conditioning of the forward model are proposed to desensitize the solution from data noise and model errors. Variable density k-space sub-sampling is presented to improve the reconstruction with the common uniform sub-sampling. A novel method for massively parallel MRI systems named Superresolution Sensitivity Encoding (SURE-SENSE) is proposed where acceleration is performed by acquiring the low spatial resolution representation of the object being imaged and the stronger sensitivity variation from small receiver coils is used to perform intra-pixel reconstruction. SURE-SENSE compares favorably the performance of standard SENSE reconstruction for low spatial resolution imaging such as spectroscopic imaging. The methods developed in this dissertation are applied to Proton Echo Planar Spectroscopic Imaging (PEPSI) for metabolic imaging in human brain with high spatial and spectral resolution in clinically feasible acquisition times. The contributions presented in this dissertation are expected to provide methods that substantially enhance the utility of parallel MRI for clinical research and to offer a framework for fast MRSI of human brain with high spatial and spectral resolution

High-speed spectroscopic OCT around 1550 nm based on dual-band swept laser source

We report a 45 kHz spectroscopic OCT system based on a swept laser source utilizing two wavelength bands. The source is generated by single-band swept laser input and a fiber optical parametric amplifier. The time-multiplexing architecture reduces the complexity of the coupling and detecting configuration in comparison with the previous dual-band swept-source setup. This high-speed spectroscopic OCT combines the advantages of the speed of the swept laser and contrast enhancement, in comparison with the time or spectral-domain spectroscopic OCT system. In the experiment, spectroscopic OCT imaging around 1550 nm is achieved for the first time. The difference in images at 1500 nm and 1600 nm clearly shows different back scattering and penetration properties which can be used for tissue classification and water content measurement.published_or_final_versio

Reduction of acquisition time using partition of the signal decay in spectroscopic imaging technique (RAPID-SI)

To overcome long acquisition times of Chemical Shift Imaging (CSI), a new Magnetic Resonance Spectroscopic Imaging (MRSI) technique called Reduction of Acquisition time by Partition of the signal Decay in Spectroscopic Imaging (RAPID-SI) using blipped phase encoding gradients inserted during signal acquisition was developed. To validate the results using RAPID-SI and to demonstrate its usefulness in terms of acquisition time and data quantification; simulations, phantom and in vivo studies were conducted, and the results were compared to standard CSI. The method was based upon the partition of a magnetic resonance spectroscopy (MRS) signal into sequential sub-signals encoded using blipped phase encoding gradients inserted during signal acquisition at a constant time interval. The RAPID-SI technique was implemented on a clinical 3 T Siemens scanner to demonstrate its clinical utility. Acceleration of data collection was performed by inserting R (R= acceleration factor) blipped gradients along a given spatial direction during data acquisition. Compared to CSI, RAPID-SI reduced acquisition time by the acceleration factor R. For example, a 2D 16x16 data set acquired in about 17 min with CSI, was reduced to approximately 2 min with the RAPID-SI (R= 8). While the SNR of the acquired RAPID-SI signal was lower compared to CSI by approximately the factor root R, it can be improved after data pre-processing and reconstruction. Compared to CSI, RAPID-SI reduces acquisition time, while preserving metabolites information. Furthermore, the method is flexible and could be combined with other acceleration methods such as Parallel Imaging

In-Vivo Three Dimensional Proton Hadamard Spectroscopic Imaging in the Human Brain

Magnetic resonance spectroscopic imaging (MRSI) is a useful tool for obtaining information on the biochemical processes underlying various pathologies. A widely used multi-voxel localization method is chemical shift imaging (CSI) which uses gradients for phase encoding. Although simple to implement, low in specific absorption rate (SAR) and immune to chemical shift displacement (CSD), it also suffers from some well known drawbacks caused by its sinc-shaped point spread function (PSF). This results in loss of both signal-to-noise ratio (SNR) as well as localization, an effect that is exacerbated at low resolutions. In contrast, an alternative localization method, Hadamard spectroscopic imaging (HSI) benefits from a theoretically ideal PSF and consequently does not suffer from these drawbacks. In this work we exploit the theoretically ideal PSF of HSI encoding to develop a novel three dimensional (3D) multi-voxel MR localization method based on transverse HSI (T-HSI). The advantages of T HSI are that unlike gradient phase-encoding: (i) the volume of interest (VOI) does not need to be smaller than the field-of-view to prevent aliasing; (ii) the number of partitions in each direction can be small, 8, 4 or even 2 at no cost in PSF; (iii) the VOI does not have to be contiguous; and (iv) the voxel profile depends on the available B1 and pulse synthesis paradigm and can therefore, at least theoretically, approach "ideal" "1" inside and "0" elsewhere. Clinical utility of the new method is shown by spectra obtained from the brain of a healthy volunteer. The benefits of T-HSI are demonstrated by a quantitative comparison to CSI of the SNR and localization in a phantom in both one and three dimensions at clinical resolutions. A novel matrix formalism is used to quantify the impact of non-ideal flip angles on T-HSI. The superior PSF of T-HSI is then used to demonstrate the feasibility of scanning regions near or on the skull while limiting the impact of lipid contamination and obtaining quantifiable spectra. A comparison to spectra obtained using CSI is shown for a healthy volunteer. The new method is also used in a clinical pathology: to scan multiple sclerosis (MS) lesions occurring near the skull. To maintain the benefits provided by the PSF of HSI at higher fields, despite its susceptibility to CSD, a additional hybrid sequence is also developed that limits both the SAR and the CSD, regardless of the size of the VOI. A comparison to CSI in a phantom and in-vivo is carried out and spectra obtained from the brain of a healthy volunteer at 3T are shown. Finally, future research avenues involving extension of this research to ultra high fields (7T) are discussed and possible clinical uses are described

Methodological consensus on clinical proton MRS of the brain: Review and recommendations

© 2019 International Society for Magnetic Resonance in Medicine Proton MRS (1H MRS) provides noninvasive, quantitative metabolite profiles of tissue and has been shown to aid the clinical management of several brain diseases. Although most modern clinical MR scanners support MRS capabilities, routine use is largely restricted to specialized centers with good access to MR research support. Widespread adoption has been slow for several reasons, and technical challenges toward obtaining reliable good-quality results have been identified as a contributing factor. Considerable progress has been made by the research community to address many of these challenges, and in this paper a consensus is presented on deficiencies in widely available MRS methodology and validated improvements that are currently in routine use at several clinical research institutions. In particular, the localization error for the PRESS localization sequence was found to be unacceptably high at 3 T, and use of the semi-adiabatic localization by adiabatic selective refocusing sequence is a recommended solution. Incorporation of simulated metabolite basis sets into analysis routines is recommended for reliably capturing the full spectral detail available from short TE acquisitions. In addition, the importance of achieving a highly homogenous static magnetic field (B0) in the acquisition region is emphasized, and the limitations of current methods and hardware are discussed. Most recommendations require only software improvements, greatly enhancing the capabilities of clinical MRS on existing hardware. Implementation of these recommendations should strengthen current clinical applications and advance progress toward developing and validating new MRS biomarkers for clinical use

Present and future of surface-enhanced Raman scattering

The discovery of the enhancement of Raman scattering by molecules adsorbed on nanostructured metal surfaces is a landmark in the history of spectroscopic and analytical techniques. Significant experimental and theoretical effort has been directed toward understanding the surface-enhanced Raman scattering (SERS) effect and demonstrating its potential in various types of ultrasensitive sensing applications in a wide variety of fields. In the 45 years since its discovery, SERS has blossomed into a rich area of research and technology, but additional efforts are still needed before it can be routinely used analytically and in commercial products. In this Review, prominent authors from around the world joined together to summarize the state of the art in understanding and using SERS and to predict what can be expected in the near future in terms of research, applications, and technological development. This Review is dedicated to SERS pioneer and our coauthor, the late Prof. Richard Van Duyne, whom we lost during the preparation of this article

Gradient characterization in MRI

Thesis (M. Eng.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2007.Includes bibliographical references (p. 53).Special magnetic resonance (MR) scans, such as spiral imaging and echo-planar imaging, require speed and gradient accuracy while putting high demands on the MR gradient system that may cause gradient distortion. Additionally, high field MR scans are prone to inhomogeneities that disturb the gradient system. Regardless of the source, gradient characterization provides a simple tool for distortion correction. An improved method, named the self-encoded slice selection algorithm, of characterizing the gradient system of the magnetic resonance system is proposed. It improves and combines the self-encode method and the direct slice selection method. The new approach is simple and fast, and allows for the measurement of waveform gradients that reach the system's limits. The technique is used to model the gradient system as a linear time-invariant transfer function through frequency-domain analysis and time-domain analysis. A transfer function model of the gradient system on the 3T Siemens Tim Trio scanner is presented here along with the characterization and analysis of common waveform gradients. Possible distortion correction approaches are also suggested.by Joseph Yitan Cheng.M.Eng

Evaluation and Validation of clinical 4.23 T sodium MRI in animals and human: Application of oblique multi-slice spin-echo pulse sequence

Objective: Application of high-field 4.23 T MRI clinical imager was demonstrated for sodium-magnetic resonance imaging (MRI) data acquisition. Primary hypothesis: Sodium [Na] in brain is MR visible. Secondary hypothesis was, if, application of multislice spin echo (MSSE) pulse sequence at selected scan parameters can sufficiently visualize the total sodium signal as indicator of sub-clinical activity. Material and Methods: MSSE pulse sequence technique was used to simulate sodium images of human brain. For validation purpose, inversion recovery pulse sequence was validated by optimization of scan inversion time (TI). Phantom of sodium and rat brain were imaged. Sodium images were validated and compared with proton MRI images. Results: MSSE pulse technique enabled to visualize the sodium signal at optimized scan parameters. Specifically, MSSE pulse technique enabled the identification of different sodium rich areas due to their subphysiological activity in the brain, comparable with proton MRI images. Reconstruction images of brain further enhanced the power to classify the brain tissue. Intracellular sodium images of agarose-saline solution filled-tube phantom were generated by use of inversion recovery pulse sequence. Conclusion: Using MSSE pulse sequence at 4.23 T, in vivo sodium images can be generated within acceptable scan time for routine clinical brain examination for achieving better sub-physiological information as obtained from proton MRI