Comparison of hyperspectral versus traditional field measurements of fractional ground cover in the Australian arid zone

Published: 28 November 2019The collection of high-quality field measurements of ground cover is critical for calibration and validation of fractional ground cover maps derived from satellite imagery. Field-based hyperspectral ground cover sampling is a potential alternative to traditional in situ techniques. This study aimed to develop an effective sampling design for spectral ground cover surveys in order to estimate fractional ground cover in the Australian arid zone. To meet this aim, we addressed two key objectives: (1) Determining how spectral surveys and traditional step-point sampling compare when conducted at the same spatial scale and (2) comparing these two methods to current Australian satellite-derived fractional cover products. Across seven arid, sparsely vegetated survey sites, six 500-m transects were established. Ground cover reflectance was recorded taking continuous hyperspectral readings along each transect while step-point surveys were conducted along the same transects. Both measures of ground cover were converted into proportions of photosynthetic vegetation, non-photosynthetic vegetation, and bare soil for each site. Comparisons were made of the proportions of photosynthetic vegetation, non-photosynthetic vegetation, and bare soil derived from both in situ methods as well as MODIS and Landsat fractional cover products. We found strong correlations between fractional cover derived from hyperspectral and step-point sampling conducted at the same spatial scale at our survey sites. Comparison of the in situ measurements and image-derived fractional cover products showed that overall, the Landsat product was strongly related to both in situ methods for non-photosynthetic vegetation and bare soil whereas the MODIS product was strongly correlated with both in situ methods for photosynthetic vegetation. This study demonstrates the potential of the spectral transect method, both in its ability to produce results comparable to the traditional transect measures, but also in its improved objectivity and relative logistic ease. Future efforts should be made to include spectral ground cover sampling as part of Australia’s plan to produce calibration and validation datasets for remotely sensed products.Claire Fisk, Kenneth D. Clarke and Megan M. Lewi

Calibration and Validation of Remotely Sensed Ground Cover Maps

Calibration and validation is essential in the development of remotely sensed fractional ground cover maps to ensure their reliability and provide users with confidence. Field measurements of fractional cover (FC) are typically collected through surveys where participants have the potential to introduce biases as they categorise ground cover. Environmental factors also have potential to influence the reliability of image-derived products. FC maps have been found to provide poor estimates of cover in arid regions of Australia, and it has been suggested that this may be due to soil colour. Further investigation is required to determine if soil colour influences satellite-derived FC products and there is scope to explore other methods of collecting field measurements in order to reduce errors. The aim of this thesis was to investigate methods of improving fractional ground cover mapping in Australia. The objectives were to (1) trial hyperspectral ground cover sampling in arid Australia by determining how spectral surveys and traditional sampling compare at the same scale and to compare these field methods to satellite-derived FC products, (2) examine observer consistency when classifying vegetation as photosynthetic or non-photosynthetic and to examine how spectral classification of vegetation compares to observer results, and (3) determine if the Australian MODIS FC product is influenced by soil colour. For objective one a sampling design suitable for the evaluation of coarse resolution imagery was developed. Sites were sampled collecting hyperspectral reflectance measurements and step-point observations of ground cover that were later compared to Australian MODIS and Landsat FC products. The results showed a strong relationship between the field sampling methods, that the Landsat FC product was strongly correlated to non-photosynthetic vegetation and soil and the MODIS product was strongly correlated to photosynthetic vegetation. This study demonstrated the hyperspectral field sampling’s improved objectivity, ease of use, and ability to produce results comparable to traditional transect measures. Objective two examined photographs and reflectance measurements of vegetation transitioning from 100% photosynthetic to 100% non-photosynthetic. Observers classified leaves as either photosynthetic or non-photosynthetic (as required in field fractional cover methods), while spectral unmixing was used to decompose the reflectance measurements into photosynthetic and non-photosynthetic proportions. At the extremes (≤ 25 % or ≥ 75 %) photosynthetic observers tended to agree and assigned the leaf to the correct category. However, for leaves in transition (> 25 % or < 75 % photosynthetic) decisions differed more widely and classifications showed little agreement with the spectral proportions of photosynthetic and non-photosynthetic vegetation. This study increased our understanding of the limitations of field data collected using traditional observation methods, of observer variation, and of when observer data may become unreliable. Objective three compared MODIS and TERN AusPlot field estimates of FC at 250 sites across Australia and examined the effect of soil colour (represented by Munsell hue) on the FC values. Overall, there was a significant difference between all 250 sites based on hue suggesting that soil colour has a significant effect on the MODIS product. This evaluation provided insights into the association of specific soil colours with bias in MODIS ground cover fractions and highlighted hues that are associated with under- or overestimation of MODIS FC. Future research may utilise this information to help develop methods of minimising the effects of soil colour in future FC products. This thesis has contributed toward efforts to improve the collection of ground cover measurements for the validation of remotely sensed products, using spectral transect surveys as an alternative to traditional surveys, for photosynthetic activity, provided insight into observer classification consistency and determined how observer-based classification and hyperspectral unmixing compare, and contributed to our understanding of the effects of soil colour on the MODIS FC product. This knowledge will allow informed consumption of the current MODIS FC product, and assist future efforts to calibrate and validate FC products ensuring end-users have reliable and consistent ground cover data for research and decision making.Thesis (Ph.D.) -- University of Adelaide, School of Biological Sciences, 202

Combining Field and Imaging Spectroscopy to Map Soil Organic Carbon in a Semiarid Environment

Semiarid regions are especially vulnerable to climate change and human-induced land-use changes and are of major importance in the context of necessary carbon sequestration and ongoing land degradation. Topsoil properties, such as soil carbon content, provide valuable indicators to these processes, and can be mapped using imaging spectroscopy (IS). In semiarid regions, this poses difficulties because models are needed that can cope with varying land surface and soil conditions, consider a partial vegetation coverage, and deal with usually low soil organic carbon (SOC) contents. We present an approach that aims at addressing these difficulties by using a combination of field and IS to map SOC in an extensively used semiarid ecosystem. In hyperspectral imagery of the HyMap sensor, the influence of nonsoil materials, i.e., vegetation, on the spectral signature of soil dominated image pixels was reduced and a residual soil signature was calculated. The proposed approach allowed this procedure up to a vegetation coverage of 40% clearly extending the mapping capability. SOC quantities are predicted by applying a spectral feature-based SOC prediction model to image data of residual soil spectra. With this approach, we could significantly increase the spatial extent for which SOC could be predicted with a minimal influence of a vegetation signal compared to previous approaches where the considered area was limited to a maximum of, e.g., 10% vegetation coverage. As a regional example, the approach was applied to a 320 km2 area in the Albany Thicket Biome, South Africa, where land cover and landuse changes have occurred due to decades of unsustainable land management. In the generated maps, spatial SOC patterns were interpreted and linked to geomorphic features and land surface processes, i.e., areas of soil erosion. It was found that the chosen approach supported the extraction of soil-related spectral image information in the semiarid region with highly varying land cover. However, the quantitative prediction of SOC contents revealed a lack in absolute accuracy

Remote Sensing of Savannas and Woodlands

Savannas and woodlands are one of the most challenging targets for remote sensing. This book provides a current snapshot of the geographical focus and application of the latest sensors and sensor combinations in savannas and woodlands. It includes feature articles on terrestrial laser scanning and on the application of remote sensing to characterization of vegetation dynamics in the Mato Grosso, Cerrado and Caatinga of Brazil. It also contains studies focussed on savannas in Europe, North America, Africa and Australia. It should be important reading for environmental practitioners and scientists globally who are concerned with the sustainability of the global savanna and woodland biome

Characterizing Dryland Ecosystems Using Remote Sensing and Dynamic Global Vegetation Modeling

Drylands include all terrestrial regions where the production of crops, forage, wood and other ecosystem services are limited by water. These ecosystems cover approximately 40% of the earth terrestrial surface and accommodate more than 2 billion people (Millennium Ecosystem Assessment, 2005). Moreover, the interannual variability of the global carbon budget is strongly regulated by vegetation dynamics in drylands. Understanding the dynamics of such ecosystems is significant for assessing the potential for and impacts of natural or anthropogenic disturbances and mitigation planning, and a necessary step toward enhancing the economic and social well-being of dryland communities in a sustainable manner (Global Drylands: A UN system-wide response, 2011). In this research, a combination of remote sensing, field data collection, and ecosystem modeling were used to establish an integrated framework for semi-arid ecosystems dynamics monitoring. Foliar nitrogen (N) plays an important role in vegetation processes such as photosynthesis and there is wide interest in retrieving this variable from hyperspectral remote sensing data. In this study, I used the theory of canopy spectral invariants (AKA p-theory) to understand the role of canopy structure and soil in the retrieval of foliar N from hyperspectral data and machine learning techniques. The results of this study showed the inconsistencies among different machine learning techniques used for estimating N. Using p-theory, I demonstrated that soil can contribute up to 95% to the total radiation budget of the canopy. I suggested an alternative approach to study photosynthesis is the use of dynamic global vegetation models (DGVMs). Gross primary production (GPP) is the apparent ecosystem scale photosynthesis that can be estimated using DGVMs. In this study, I performed a thorough sensitivity analysis and calibrated the Ecosystem Demography (EDv2.2) model along an elevation gradient in a dryland study area. I investigated the GPP capacity and activity by comparing the EDv2.2 GPP with flux towers and remote sensing products. The overall results showed that EDv2.2 performed well in capturing GPP capacity and its long term trend at lower elevation sites within the study area; whereas the model performed worse at higher elevations likely due to the change in vegetation community. I discussed that adding more heterogeneity and modifying ecosystem processes such as phenology and plant hydraulics in ED.v2.2 will improve its application to higher elevation ecosystems where there is more vegetation production. And finally, I developed an integrated hyperspectral-lidar framework for regional mapping of xeric and mesic vegetation in the study area. I showed that by considering spectral shape and magnitude, canopy structure and landscape features (riparian zone), we can develop a straightforward algorithm for vegetation mapping in drylands. This framework is simple, easy to interpret and consistent with our ecological understanding of vegetation distribution in drylands over large areas. Collectively, the results I present in this dissertation demonstrate the potential for advanced remote sensing and modeling to help us better understand ecosystem processes in drylands

QUANTIFYING GRASSLAND NON-PHOTOSYNTHETIC VEGETATION BIOMASS USING REMOTE SENSING DATA

Non-photosynthetic vegetation (NPV) refers to vegetation that cannot perform a photosynthetic function. NPV, including standing dead vegetation and surface plant litter, plays a vital role in maintaining ecosystem function through controlling carbon, water and nutrient uptake as well as natural fire frequency and intensity in diverse ecosystems such as forest, savannah, wetland, cropland, and grassland. Due to its ecological importance, NPV has been selected as an indicator of grassland ecosystem health by the Alberta Public Lands Administration in Canada. The ecological importance of NPV has driven considerable research on quantifying NPV biomass with remote sensing approaches in various ecosystems. Although remote images, especially hyperspectral images, have demonstrated potential for use in NPV estimation, there has not been a way to quantify NPV biomass in semiarid grasslands where NPV biomass is affected by green vegetation (PV), bare soil and biological soil crust (BSC). The purpose of this research is to find a solution to quantitatively estimate NPV biomass with remote sensing approaches in semiarid mixed grasslands. Research was conducted in Grasslands National Park (GNP), a parcel of semiarid mixed prairie grassland in southern Saskatchewan, Canada. Multispectral images, including newly operational Landsat 8 Operational Land Imager (OLI) and Sentinel-2A Multi-spectral Instrument (MSIs) images and fine Quad-pol Radarsat-2 images were used for estimating NPV biomass in early, middle, and peak growing seasons via a simple linear regression approach. The results indicate that multispectral Landsat 8 OLI and Sentinel-2A MSIs have potential to quantify NPV biomass in peak and early senescence growing seasons. Radarsat-2 can also provide a solution for NPV biomass estimation. However, the performance of Radarsat-2 images is greatly affected by incidence angle of the image acquisition. This research filled a critical gap in applying remote sensing approaches to quantify NPV biomass in grassland ecosystems. NPV biomass estimates and approaches for estimating NPV biomass will contribute to grassland ecosystem health assessment (EHA) and natural resource (i.e. land, soil, water, plant, and animal) management

Forage supply of West African rangelands : Towards a better understanding of ecosystem services by application of hyperspectral remote sensing

Grazing is the predominant type of land use in savanna regions all over the world. Although large savanna areas in Africa are still grazed by wild herbivores, the West African Sudanian savanna region mainly comprises rangeland ecosystems, providing the important ecosystem service of forage supply for domestic livestock. However, these dryland rangelands are threatened by global change, including a predicted in-crease in climatic aridity and variability as well as land degradation caused by overgrazing. In this context, the international research project WASCAL (West African Science Service Centre on Climate Change and Adapted Land Use) was initiated to investigate the effects of climatic change in this region and to develop effective adaptation and mitigation measures. This cumulative dissertation aims at providing a methodology for a regular knowledge-driven monitoring of forage resources in West Africa. Due to the vast and remote nature of Sudanian savannas, remote sensing technologies are required to achieve this goal. Hence, as a first step, it was necessary to test whether hyperspectral near-surface remote sensing offers the means to model and estimate the two most important aspects of forage supply, i.e. forage quantity (green biomass) and quality (metabolisable energy) (Chapter 2.1). Evidence was provided that partial least squares regression was able to generate robust and transferable forage models. In a second step, direct and indirect drivers of forage supply on the plot and site level were identified by using path modelling within the well-defined concept of social-ecological systems (Chapter 2.2). Results indicate that the provisioning ecosystem service of forage supply is mainly driven by land use, while climatic aridity exerts foremost indirect control by determining the way people use their environment. Building on these findings, upscaling of models was tested to generate maps of forage quality and quantity from satellite images (Chapter 2.3). Here, two different available data sources, i.e. multi- and hyperspectral satellites, were compared to serve the overall objective to install a regular forage monitoring system. In conclusion, preliminary forage maps could be created from both systems. An independent validation would be a research desiderate for future studies. Moreover, both systems feature certain shortcomings that might only be overcome by future satellite missions

Fire

Vegetation plays a crucial role in regulating environmental conditions, including weather and climate. The amount of water and carbon dioxide in the air and the albedo of our planet are all influenced by vegetation, which in turn influences all life on Earth. Soil properties are also strongly influenced by vegetation, through biogeochemical cycles and feedback loops (see Volume 1A—Section 4). Vegetated landscapes on Earth provide habitat and energy for a rich diversity of animal species, including humans. Vegetation is also a major component of the world economy, through the global production of food, fibre, fuel, medicine, and other plantbased resources for human consumptio

Spectral Mixture Analysis for Monitoring and Mapping Desertification Processes in Semi-arid Areas in North Kordofan State, Sudan

Multi-temporal remotely sensed data (MSS, TM and ETM+)were used for monitoring and mapping the desertification processes in North Kordofan State, Sudan.A liear mixture model (LMM) was adopted to analyse and the desertification proccesses by using the image endmembers. interpretation of ancillary data and field observation was adopted to verfiy the role of human impacts in the temporal changes in the study area. The findings of the study proved the powerfull of remotely sensed data in monitoring and mapping the desertification processes and come out with valuable recommendations which could contribute positively in reducing desert encroachment in the area