10,116 research outputs found
Comparing Graphs via Persistence Distortion
Metric graphs are ubiquitous in science and engineering. For example, many data are drawn from hidden spaces that are graph-like, such as the cosmic web. A metric graph offers one of the simplest yet still meaningful ways to represent the non-linear structure hidden behind the data. In this paper, we propose a new distance between two finite metric graphs, called the persistence-distortion distance, which draws upon a topological idea. This topological perspective along with the metric space viewpoint provide a new angle to the graph matching problem. Our persistence-distortion distance has two properties not shared by previous methods: First, it is stable against the perturbations of the input graph metrics. Second, it is a continuous distance measure, in the sense that it is defined on an alignment of the underlying spaces of input graphs, instead of merely their nodes. This makes our persistence-distortion distance robust against, for example, different discretizations of the same underlying graph.
Despite considering the input graphs as continuous spaces, that is, taking all points into account, we show that we can compute the persistence-distortion distance in polynomial time. The time complexity for the discrete case where only graph nodes are considered is much faster
Barcode Embeddings for Metric Graphs
Stable topological invariants are a cornerstone of persistence theory and
applied topology, but their discriminative properties are often
poorly-understood. In this paper we study a rich homology-based invariant first
defined by Dey, Shi, and Wang, which we think of as embedding a metric graph in
the barcode space. We prove that this invariant is locally injective on the
space of metric graphs and globally injective on a GH-dense subset. Moreover,
we show that is globally injective on a full measure subset of metric graphs,
in the appropriate sense.Comment: The newest draft clarifies the proofs in Sections 7 and 8, and
provides improved figures therein. It also includes a results section in the
introductio
Local Equivalence and Intrinsic Metrics between Reeb Graphs
As graphical summaries for topological spaces and maps, Reeb graphs are
common objects in the computer graphics or topological data analysis
literature. Defining good metrics between these objects has become an important
question for applications, where it matters to quantify the extent by which two
given Reeb graphs differ. Recent contributions emphasize this aspect, proposing
novel distances such as {\em functional distortion} or {\em interleaving} that
are provably more discriminative than the so-called {\em bottleneck distance},
being true metrics whereas the latter is only a pseudo-metric. Their main
drawback compared to the bottleneck distance is to be comparatively hard (if at
all possible) to evaluate. Here we take the opposite view on the problem and
show that the bottleneck distance is in fact good enough {\em locally}, in the
sense that it is able to discriminate a Reeb graph from any other Reeb graph in
a small enough neighborhood, as efficiently as the other metrics do. This
suggests considering the {\em intrinsic metrics} induced by these distances,
which turn out to be all {\em globally} equivalent. This novel viewpoint on the
study of Reeb graphs has a potential impact on applications, where one may not
only be interested in discriminating between data but also in interpolating
between them
On the Reconstruction of Geodesic Subspaces of
We consider the topological and geometric reconstruction of a geodesic
subspace of both from the \v{C}ech and Vietoris-Rips filtrations
on a finite, Hausdorff-close, Euclidean sample. Our reconstruction technique
leverages the intrinsic length metric induced by the geodesics on the subspace.
We consider the distortion and convexity radius as our sampling parameters for
a successful reconstruction. For a geodesic subspace with finite distortion and
positive convexity radius, we guarantee a correct computation of its homotopy
and homology groups from the sample. For geodesic subspaces of ,
we also devise an algorithm to output a homotopy equivalent geometric complex
that has a very small Hausdorff distance to the unknown shape of interest
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