Strongly Monotone Drawings of Planar Graphs

A straight-line drawing of a graph is a monotone drawing if for each pair of vertices there is a path which is monotonically increasing in some direction, and it is called a strongly monotone drawing if the direction of monotonicity is given by the direction of the line segment connecting the two vertices. We present algorithms to compute crossing-free strongly monotone drawings for some classes of planar graphs; namely, 3-connected planar graphs, outerplanar graphs, and 2-trees. The drawings of 3-connected planar graphs are based on primal-dual circle packings. Our drawings of outerplanar graphs are based on a new algorithm that constructs strongly monotone drawings of trees which are also convex. For irreducible trees, these drawings are strictly convex

Inferring ancestral sequences in taxon-rich phylogenies

Statistical consistency in phylogenetics has traditionally referred to the accuracy of estimating phylogenetic parameters for a fixed number of species as we increase the number of characters. However, as sequences are often of fixed length (e.g. for a gene) although we are often able to sample more taxa, it is useful to consider a dual type of statistical consistency where we increase the number of species, rather than characters. This raises some basic questions: what can we learn about the evolutionary process as we increase the number of species? In particular, does having more species allow us to infer the ancestral state of characters accurately? This question is particularly relevant when sequence site evolution varies in a complex way from character to character, as well as for reconstructing ancestral sequences. In this paper, we assemble a collection of results to analyse various approaches for inferring ancestral information with increasing accuracy as the number of taxa increases.Comment: 32 pages, 5 figures, 1 table

Monotone Drawings of kk-Inner Planar Graphs

A $k$-inner planar graph is a planar graph that has a plane drawing with at most $k$ {internal vertices}, i.e., vertices that do not lie on the boundary of the outer face of its drawing. An outerplanar graph is a $0$-inner planar graph. In this paper, we show how to construct a monotone drawing of a $k$-inner planar graph on a $2(k+1)n \times 2(k+1)n$ grid. In the special case of an outerplanar graph, we can produce a planar monotone drawing on a $n \times n$ grid, improving previously known results.Comment: Appears in the Proceedings of the 26th International Symposium on Graph Drawing and Network Visualization (GD 2018). Revised introductio