66,158 research outputs found
Recent advances in directional statistics
Mainstream statistical methodology is generally applicable to data observed
in Euclidean space. There are, however, numerous contexts of considerable
scientific interest in which the natural supports for the data under
consideration are Riemannian manifolds like the unit circle, torus, sphere and
their extensions. Typically, such data can be represented using one or more
directions, and directional statistics is the branch of statistics that deals
with their analysis. In this paper we provide a review of the many recent
developments in the field since the publication of Mardia and Jupp (1999),
still the most comprehensive text on directional statistics. Many of those
developments have been stimulated by interesting applications in fields as
diverse as astronomy, medicine, genetics, neurology, aeronautics, acoustics,
image analysis, text mining, environmetrics, and machine learning. We begin by
considering developments for the exploratory analysis of directional data
before progressing to distributional models, general approaches to inference,
hypothesis testing, regression, nonparametric curve estimation, methods for
dimension reduction, classification and clustering, and the modelling of time
series, spatial and spatio-temporal data. An overview of currently available
software for analysing directional data is also provided, and potential future
developments discussed.Comment: 61 page
Stochastic Volatility Filtering with Intractable Likelihoods
This paper is concerned with particle filtering for -stable
stochastic volatility models. The -stable distribution provides a
flexible framework for modeling asymmetry and heavy tails, which is useful when
modeling financial returns. An issue with this distributional assumption is the
lack of a closed form for the probability density function. To estimate the
volatility of financial returns in this setting, we develop a novel auxiliary
particle filter. The algorithm we develop can be easily applied to any hidden
Markov model for which the likelihood function is intractable or
computationally expensive. The approximate target distribution of our auxiliary
filter is based on the idea of approximate Bayesian computation (ABC). ABC
methods allow for inference on posterior quantities in situations when the
likelihood of the underlying model is not available in closed form, but
simulating samples from it is possible. The ABC auxiliary particle filter
(ABC-APF) that we propose provides not only a good alternative to state
estimation in stochastic volatility models, but it also improves on the
existing ABC literature. It allows for more flexibility in state estimation
while improving on the accuracy through better proposal distributions in cases
when the optimal importance density of the filter is unavailable in closed
form. We assess the performance of the ABC-APF on a simulated dataset from the
-stable stochastic volatility model and compare it to other currently
existing ABC filters
MGOS: A library for molecular geometry and its operating system
The geometry of atomic arrangement underpins the structural understanding of molecules in many fields. However, no general framework of mathematical/computational theory for the geometry of atomic arrangement exists. Here we present "Molecular Geometry (MG)'' as a theoretical framework accompanied by "MG Operating System (MGOS)'' which consists of callable functions implementing the MG theory. MG allows researchers to model complicated molecular structure problems in terms of elementary yet standard notions of volume, area, etc. and MGOS frees them from the hard and tedious task of developing/implementing geometric algorithms so that they can focus more on their primary research issues. MG facilitates simpler modeling of molecular structure problems; MGOS functions can be conveniently embedded in application programs for the efficient and accurate solution of geometric queries involving atomic arrangements. The use of MGOS in problems involving spherical entities is akin to the use of math libraries in general purpose programming languages in science and engineering. (C) 2019 The Author(s). Published by Elsevier B.V
A pencil distributed finite difference code for strongly turbulent wall-bounded flows
We present a numerical scheme geared for high performance computation of
wall-bounded turbulent flows. The number of all-to-all communications is
decreased to only six instances by using a two-dimensional (pencil) domain
decomposition and utilizing the favourable scaling of the CFL time-step
constraint as compared to the diffusive time-step constraint. As the CFL
condition is more restrictive at high driving, implicit time integration of the
viscous terms in the wall-parallel directions is no longer required. This
avoids the communication of non-local information to a process for the
computation of implicit derivatives in these directions. We explain in detail
the numerical scheme used for the integration of the equations, and the
underlying parallelization. The code is shown to have very good strong and weak
scaling to at least 64K cores
Computational Physics on Graphics Processing Units
The use of graphics processing units for scientific computations is an
emerging strategy that can significantly speed up various different algorithms.
In this review, we discuss advances made in the field of computational physics,
focusing on classical molecular dynamics, and on quantum simulations for
electronic structure calculations using the density functional theory, wave
function techniques, and quantum field theory.Comment: Proceedings of the 11th International Conference, PARA 2012,
Helsinki, Finland, June 10-13, 201
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