28,457 research outputs found
Communication Structure of Cortical Networks
Large-scale cortical networks exhibit characteristic topological properties that shape communication between brain regions and global cortical dynamics. Analysis of complex networks allows the description of connectedness, distance, clustering, and centrality that reveal different aspects of how the network's nodes communicate. Here, we focus on a novel analysis of complex walks in a series of mammalian cortical networks that model potential dynamics of information flow between individual brain regions. We introduce two new measures called absorption and driftness. Absorption is the average length of random walks between any two nodes, and takes into account all paths that may diffuse activity throughout the network. Driftness is the ratio between absorption and the corresponding shortest path length. For a given node of the network, we also define four related measurements, namely in- and out-absorption as well as in- and out-driftness, as the averages of the corresponding measures from all nodes to that node, and from that node to all nodes, respectively. We find that the cat thalamo-cortical system incorporates features of two classic network topologies, Erdös–Rényi graphs with respect to in-absorption and in-driftness, and configuration models with respect to out-absorption and out-driftness. Moreover, taken together these four measures separate the network nodes based on broad functional roles (visual, auditory, somatomotor, and frontolimbic)
Rich-Club Organization in Effective Connectivity among Cortical Neurons.
The performance of complex networks, like the brain, depends on how effectively their elements communicate. Despite the importance of communication, it is virtually unknown how information is transferred in local cortical networks, consisting of hundreds of closely spaced neurons. To address this, it is important to record simultaneously from hundreds of neurons at a spacing that matches typical axonal connection distances, and at a temporal resolution that matches synaptic delays. We used a 512-electrode array (60 μm spacing) to record spontaneous activity at 20 kHz from up to 500 neurons simultaneously in slice cultures of mouse somatosensory cortex for 1 h at a time. We applied a previously validated version of transfer entropy to quantify information transfer. Similar to in vivo reports, we found an approximately lognormal distribution of firing rates. Pairwise information transfer strengths also were nearly lognormally distributed, similar to reports of synaptic strengths. Some neurons transferred and received much more information than others, which is consistent with previous predictions. Neurons with the highest outgoing and incoming information transfer were more strongly connected to each other than chance, thus forming a “rich club.” We found similar results in networks recorded in vivo from rodent cortex, suggesting the generality of these findings. A rich-club structure has been found previously in large-scale human brain networks and is thought to facilitate communication between cortical regions. The discovery of a small, but information-rich, subset of neurons within cortical regions suggests that this population will play a vital role in communication, learning, and memory.SIGNIFICANCE STATEMENT Many studies have focused on communication networks between cortical brain regions. In contrast, very few studies have examined communication networks within a cortical region. This is the first study to combine such a large number of neurons (several hundred at a time) with such high temporal resolution (so we can know the direction of communication between neurons) for mapping networks within cortex. We found that information was not transferred equally through all neurons. Instead, ∼70% of the information passed through only 20% of the neurons. Network models suggest that this highly concentrated pattern of information transfer would be both efficient and robust to damage. Therefore, this work may help in understanding how the cortex processes information and responds to neurodegenerative diseases
Feed-Forward Propagation of Temporal and Rate Information between Cortical Populations during Coherent Activation in Engineered In Vitro Networks.
Transient propagation of information across neuronal assembles is thought to underlie many cognitive processes. However, the nature of the neural code that is embedded within these transmissions remains uncertain. Much of our understanding of how information is transmitted among these assemblies has been derived from computational models. While these models have been instrumental in understanding these processes they often make simplifying assumptions about the biophysical properties of neurons that may influence the nature and properties expressed. To address this issue we created an in vitro analog of a feed-forward network composed of two small populations (also referred to as assemblies or layers) of living dissociated rat cortical neurons. The populations were separated by, and communicated through, a microelectromechanical systems (MEMS) device containing a strip of microscale tunnels. Delayed culturing of one population in the first layer followed by the second a few days later induced the unidirectional growth of axons through the microtunnels resulting in a primarily feed-forward communication between these two small neural populations. In this study we systematically manipulated the number of tunnels that connected each layer and hence, the number of axons providing communication between those populations. We then assess the effect of reducing the number of tunnels has upon the properties of between-layer communication capacity and fidelity of neural transmission among spike trains transmitted across and within layers. We show evidence based on Victor-Purpura's and van Rossum's spike train similarity metrics supporting the presence of both rate and temporal information embedded within these transmissions whose fidelity increased during communication both between and within layers when the number of tunnels are increased. We also provide evidence reinforcing the role of synchronized activity upon transmission fidelity during the spontaneous synchronized network burst events that propagated between layers and highlight the potential applications of these MEMs devices as a tool for further investigation of structure and functional dynamics among neural populations
Scaling of a large-scale simulation of synchronous slow-wave and asynchronous awake-like activity of a cortical model with long-range interconnections
Cortical synapse organization supports a range of dynamic states on multiple
spatial and temporal scales, from synchronous slow wave activity (SWA),
characteristic of deep sleep or anesthesia, to fluctuating, asynchronous
activity during wakefulness (AW). Such dynamic diversity poses a challenge for
producing efficient large-scale simulations that embody realistic metaphors of
short- and long-range synaptic connectivity. In fact, during SWA and AW
different spatial extents of the cortical tissue are active in a given timespan
and at different firing rates, which implies a wide variety of loads of local
computation and communication. A balanced evaluation of simulation performance
and robustness should therefore include tests of a variety of cortical dynamic
states. Here, we demonstrate performance scaling of our proprietary Distributed
and Plastic Spiking Neural Networks (DPSNN) simulation engine in both SWA and
AW for bidimensional grids of neural populations, which reflects the modular
organization of the cortex. We explored networks up to 192x192 modules, each
composed of 1250 integrate-and-fire neurons with spike-frequency adaptation,
and exponentially decaying inter-modular synaptic connectivity with varying
spatial decay constant. For the largest networks the total number of synapses
was over 70 billion. The execution platform included up to 64 dual-socket
nodes, each socket mounting 8 Intel Xeon Haswell processor cores @ 2.40GHz
clock rates. Network initialization time, memory usage, and execution time
showed good scaling performances from 1 to 1024 processes, implemented using
the standard Message Passing Interface (MPI) protocol. We achieved simulation
speeds of between 2.3x10^9 and 4.1x10^9 synaptic events per second for both
cortical states in the explored range of inter-modular interconnections.Comment: 22 pages, 9 figures, 4 table
Navigation of brain networks
Understanding the mechanisms of neural communication in large-scale brain
networks remains a major goal in neuroscience. We investigated whether
navigation is a parsimonious routing model for connectomics. Navigating a
network involves progressing to the next node that is closest in distance to a
desired destination. We developed a measure to quantify navigation efficiency
and found that connectomes in a range of mammalian species (human, mouse and
macaque) can be successfully navigated with near-optimal efficiency (>80% of
optimal efficiency for typical connection densities). Rewiring network topology
or repositioning network nodes resulted in 45%-60% reductions in navigation
performance. Specifically, we found that brain networks cannot be progressively
rewired (randomized or clusterized) to result in topologies with significantly
improved navigation performance. Navigation was also found to: i) promote a
resource-efficient distribution of the information traffic load, potentially
relieving communication bottlenecks; and, ii) explain significant variation in
functional connectivity. Unlike prevalently studied communication strategies in
connectomics, navigation does not mandate biologically unrealistic assumptions
about global knowledge of network topology. We conclude that the wiring and
spatial embedding of brain networks is conducive to effective decentralized
communication. Graph-theoretic studies of the connectome should consider
measures of network efficiency and centrality that are consistent with
decentralized models of neural communication
- …