Automated Remote Sensing Image Interpretation with Limited Labeled Training Data

Automated remote sensing image interpretation has been investigated for more than a decade. In early years, most work was based on the assumption that there are sufficient labeled samples to be used for training. However, ground-truth collection is a very tedious and time-consuming task and sometimes very expensive, especially in the field of remote sensing that usually relies on field surveys to collect ground truth. In recent years, as the development of advanced machine learning techniques, remote sensing image interpretation with limited ground-truth has caught the attention of researchers in the fields of both remote sensing and computer science. Three approaches that focus on different aspects of the interpretation process, i.e., feature extraction, classification, and segmentation, are proposed to deal with the limited ground truth problem. First, feature extraction techniques, which usually serve as a pre-processing step for remote sensing image classification are explored. Instead of only focusing on feature extraction, a joint feature extraction and classification framework is proposed based on ensemble local manifold learning. Second, classifiers in the case of limited labeled training data are investigated, and an enhanced ensemble learning method that outperforms state-of-the-art classification methods is proposed. Third, image segmentation techniques are investigated, with the aid of unlabeled samples and spatial information. A semi-supervised self-training method is proposed, which is capable of expanding the number of training samples by its own and hence improving classification performance iteratively. Experiments show that the proposed approaches outperform state-of-the-art techniques in terms of classification accuracy on benchmark remote sensing datasets.4 month

Contributions to Ensemble Classifiers with Image Analysis Applications

134 p.Ésta tesis tiene dos aspectos fundamentales, por un lado, la propuesta denuevas arquitecturas de clasificadores y, por otro, su aplicación a el análisis deimagen.Desde el punto de vista de proponer nuevas arquitecturas de clasificaciónla tesis tiene dos contribucciones principales. En primer lugar la propuestade un innovador ensemble de clasificadores basado en arquitecturas aleatorias,como pueden ser las Extreme Learning Machines (ELM), Random Forest (RF) yRotation Forest, llamado Hybrid Extreme Rotation Forest (HERF) y su mejoraAnticipative HERF (AHERF) que conlleva una selección del modelo basada enel rendimiento de predicción para cada conjunto de datos específico. Ademásde lo anterior, proveemos una prueba formal tanto del AHERF, como de laconvergencia de los ensembles de regresores ELMs que mejoran la usabilidad yreproducibilidad de los resultados.En la vertiente de aplicación hemos estado trabajando con dos tipos de imágenes:imágenes hiperespectrales de remote sensing, e imágenes médicas tanto depatologías específicas de venas de sangre como de imágenes para el diagnósticode Alzheimer. En todos los casos los ensembles de clasificadores han sido la herramientacomún además de estrategias especificas de aprendizaje activo basadasen dichos ensembles de clasificadores. En el caso concreto de la segmentaciónde vasos sanguíneos nos hemos enfrentado con problemas, uno relacionado conlos trombos del Aneurismas de Aorta Abdominal en imágenes 3D de tomografíacomputerizada y el otro la segmentación de venas sangineas en la retina. Losresultados en ambos casos en términos de rendimiento en clasificación y ahorrode tiempo en la segmentación humana nos permiten recomendar esos enfoquespara la práctica clínica.Chapter 1Background y contribuccionesDado el espacio limitado para realizar el resumen de la tesis hemos decididoincluir un resumen general con los puntos más importantes, una pequeña introducciónque pudiera servir como background para entender los conceptos básicosde cada uno de los temas que hemos tocado y un listado con las contribuccionesmás importantes.1.1 Ensembles de clasificadoresLa idea de los ensembles de clasificadores fue propuesta por Hansen y Salamon[4] en el contexto del aprendizaje de las redes neuronales artificiales. Sutrabajo mostró que un ensemble de redes neuronales con un esquema de consensogrupal podía mejorar el resultado obtenido con una única red neuronal.Los ensembles de clasificadores buscan obtener unos resultados de clasificaciónmejores combinando clasificadores débiles y diversos [8, 9]. La propuesta inicialde ensemble contenía una colección homogena de clasificadores individuales. ElRandom Forest es un claro ejemplo de ello, puesto que combina la salida de unacolección de árboles de decisión realizando una votación por mayoría [2, 3], yse construye utilizando una técnica de remuestreo sobre el conjunto de datos ycon selección aleatoria de variables.2CHAPTER 1. BACKGROUND Y CONTRIBUCCIONES 31.2 Aprendizaje activoLa construcción de un clasificador supervisado consiste en el aprendizaje de unaasignación de funciones de datos en un conjunto de clases dado un conjunto deentrenamiento etiquetado. En muchas situaciones de la vida real la obtenciónde las etiquetas del conjunto de entrenamiento es costosa, lenta y propensa aerrores. Esto hace que la construcción del conjunto de entrenamiento sea unatarea engorrosa y requiera un análisis manual exaustivo de la imagen. Esto se realizanormalmente mediante una inspección visual de las imágenes y realizandoun etiquetado píxel a píxel. En consecuencia el conjunto de entrenamiento esaltamente redundante y hace que la fase de entrenamiento del modelo sea muylenta. Además los píxeles ruidosos pueden interferir en las estadísticas de cadaclase lo que puede dar lugar a errores de clasificación y/o overfitting. Por tantoes deseable que un conjunto de entrenamiento sea construido de una manera inteligente,lo que significa que debe representar correctamente los límites de clasemediante el muestreo de píxeles discriminantes. La generalización es la habilidadde etiquetar correctamente datos que no se han visto previamente y quepor tanto son nuevos para el modelo. El aprendizaje activo intenta aprovecharla interacción con un usuario para proporcionar las etiquetas de las muestrasdel conjunto de entrenamiento con el objetivo de obtener la clasificación másprecisa utilizando el conjunto de entrenamiento más pequeño posible.1.3 AlzheimerLa enfermedad de Alzheimer es una de las causas más importantes de discapacidaden personas mayores. Dado el envejecimiento poblacional que es una realidaden muchos países, con el aumento de la esperanza de vida y con el aumentodel número de personas mayores, el número de pacientes con demencia aumentarátambién. Debido a la importancia socioeconómica de la enfermedad enlos países occidentales existe un fuerte esfuerzo internacional focalizado en laenfermedad del Alzheimer. En las etapas tempranas de la enfermedad la atrofiacerebral suele ser sutil y está espacialmente distribuida por diferentes regionescerebrales que incluyen la corteza entorrinal, el hipocampo, las estructuras temporaleslateral e inferior, así como el cíngulo anterior y posterior. Son muchoslos esfuerzos de diseño de algoritmos computacionales tratando de encontrarbiomarcadores de imagen que puedan ser utilizados para el diagnóstico no invasivodel Alzheimer y otras enfermedades neurodegenerativas.CHAPTER 1. BACKGROUND Y CONTRIBUCCIONES 41.4 Segmentación de vasos sanguíneosLa segmentación de los vasos sanguíneos [1, 7, 6] es una de las herramientas computacionalesesenciales para la evaluación clínica de las enfermedades vasculares.Consiste en particionar un angiograma en dos regiones que no se superponen:la región vasculares y el fondo. Basándonos en los resultados de dicha particiónse pueden extraer, modelar, manipular, medir y visualizar las superficies vasculares.Éstas estructuras son muy útiles y juegan un rol muy imporntate en lostratamientos endovasculares de las enfermedades vasculares. Las enfermedadesvasculares son una de las principales fuentes de morbilidad y mortalidad en todoel mundo.Aneurisma de Aorta Abdominal El Aneurisma de Aorta Abdominal (AAA)es una dilatación local de la Aorta que ocurre entre las arterias renal e ilíaca. Eldebilitamiento de la pared de la aorta conduce a su deformación y la generaciónde un trombo. Generalmente, un AAA se diagnostica cuando el diámetro anterioposteriormínimo de la aorta alcanza los 3 centímetros [5]. La mayoría delos aneurismas aórticos son asintomáticos y sin complicaciones. Los aneurismasque causan los síntomas tienen un mayor riesgo de ruptura. El dolor abdominalo el dolor de espalda son las dos principales características clínicas que sugiereno bien la reciente expansión o fugas. Las complicaciones son a menudo cuestiónde vida o muerte y pueden ocurrir en un corto espacio de tiempo. Por lo tanto,el reto consiste en diagnosticar lo antes posible la aparición de los síntomas.Imágenes de Retina La evaluación de imágenes del fondo del ojo es una herramientade diagnóstico de la patología vascular y no vascular. Dicha inspecciónpuede revelar hipertensión, diabetes, arteriosclerosis, enfermedades cardiovascularese ictus. Los principales retos para la segmentación de vasos retinianos son:(1) la presencia de lesiones que se pueden interpretar de forma errónea comovasos sanguíneos; (2) bajo contraste alrededor de los vasos más delgados, (3)múltiples escalas de tamaño de los vasos.1.5 ContribucionesÉsta tesis tiene dos tipos de contribuciones. Contribuciones computacionales ycontribuciones orientadas a una aplicación o prácticas.CHAPTER 1. BACKGROUND Y CONTRIBUCCIONES 5Desde un punto de vista computacional las contribuciones han sido las siguientes:¿ Un nuevo esquema de aprendizaje activo usando Random Forest y el cálculode la incertidumbre que permite una segmentación de imágenes rápida,precisa e interactiva.¿ Hybrid Extreme Rotation Forest.¿ Adaptative Hybrid Extreme Rotation Forest.¿ Métodos de aprendizaje semisupervisados espectrales-espaciales.¿ Unmixing no lineal y reconstrucción utilizando ensembles de regresoresELM.Desde un punto de vista práctico:¿ Imágenes médicas¿ Aprendizaje activo combinado con HERF para la segmentación deimágenes de tomografía computerizada.¿ Mejorar el aprendizaje activo para segmentación de imágenes de tomografíacomputerizada con información de dominio.¿ Aprendizaje activo con el clasificador bootstrapped dendritic aplicadoa segmentación de imágenes médicas.¿ Meta-ensembles de clasificadores para detección de Alzheimer conimágenes de resonancia magnética.¿ Random Forest combinado con aprendizaje activo para segmentaciónde imágenes de retina.¿ Segmentación automática de grasa subcutanea y visceral utilizandoresonancia magnética.¿ Imágenes hiperespectrales¿ Unmixing no lineal y reconstrucción utilizando ensembles de regresoresELM.¿ Métodos de aprendizaje semisupervisados espectrales-espaciales concorrección espacial usando AHERF.¿ Método semisupervisado de clasificación utilizando ensembles de ELMsy con regularización espacial

A Comprehensive Survey of Deep Learning in Remote Sensing: Theories, Tools and Challenges for the Community

In recent years, deep learning (DL), a re-branding of neural networks (NNs), has risen to the top in numerous areas, namely computer vision (CV), speech recognition, natural language processing, etc. Whereas remote sensing (RS) possesses a number of unique challenges, primarily related to sensors and applications, inevitably RS draws from many of the same theories as CV; e.g., statistics, fusion, and machine learning, to name a few. This means that the RS community should be aware of, if not at the leading edge of, of advancements like DL. Herein, we provide the most comprehensive survey of state-of-the-art RS DL research. We also review recent new developments in the DL field that can be used in DL for RS. Namely, we focus on theories, tools and challenges for the RS community. Specifically, we focus on unsolved challenges and opportunities as it relates to (i) inadequate data sets, (ii) human-understandable solutions for modelling physical phenomena, (iii) Big Data, (iv) non-traditional heterogeneous data sources, (v) DL architectures and learning algorithms for spectral, spatial and temporal data, (vi) transfer learning, (vii) an improved theoretical understanding of DL systems, (viii) high barriers to entry, and (ix) training and optimizing the DL.Comment: 64 pages, 411 references. To appear in Journal of Applied Remote Sensin

Mapping Species Composition of Forests and Tree Plantations in Northeastern Costa Rica with an Integration of Hyperspectral and Multitemporal Landsat Imagery

An efficient means to map tree plantations is needed to detect tropical land use change and evaluate reforestation projects. To analyze recent tree plantation expansion in northeastern Costa Rica, we examined the potential of combining moderate-resolution hyperspectral imagery (2005 HyMap mosaic) with multitemporal, multispectral data (Landsat) to accurately classify (1) general forest types and (2) tree plantations by species composition. Following a linear discriminant analysis to reduce data dimensionality, we compared four Random Forest classification models: hyperspectral data (HD) alone; HD plus interannual spectral metrics; HD plus a multitemporal forest regrowth classification; and all three models combined. The fourth, combined model achieved overall accuracy of 88.5%. Adding multitemporal data significantly improved classification accuracy (p less than 0.0001) of all forest types, although the effect on tree plantation accuracy was modest. The hyperspectral data alone classified six species of tree plantations with 75% to 93% producer's accuracy; adding multitemporal spectral data increased accuracy only for two species with dense canopies. Non-native tree species had higher classification accuracy overall and made up the majority of tree plantations in this landscape. Our results indicate that combining occasionally acquired hyperspectral data with widely available multitemporal satellite imagery enhances mapping and monitoring of reforestation in tropical landscapes

Performance Enhancement of Hyperspectral Semantic Segmentation Leveraging Ensemble Networks

Hyperspectral image (HSI) semantic segmentation is a growing field within computer vision, machine learning, and forestry. Due to the separate nature of these communities, research applying deep learning techniques to ground-type semantic segmentation needs improvement, along with working to bring the research and expectations of these three communities together. Semantic segmentation consists of classifying individual pixels within the image based on the features present. Many issues need to be resolved in HSI semantic segmentation including data preprocessing, feature reduction, semantic segmentation techniques, and adversarial training. In this thesis, we tackle these challenges by employing ensemble methods for HSI semantic segmentation. Deep neural networks (DNNs) for classification tasks have been employed in HSI semantic segmentation with great success. The ensemble method in traditional classification is often used to increase performance, but research into applying it to semantic segmentation in HSIs is relatively new. Instead of using a single network approach to classification, the ensemble method employs multiple networks to improve performance. Research into ensemble methods in HSI has seen increased accuracy, but often has higher computational complexity and relies on expensive preprocessing techniques. To showcase the performance increase the ensemble method has on semantic segmentation, we propose the novel flagship model Clustering Ensemble U-Net (CEU-Net). In CEU-Net we (1) use a bagging ensemble technique to reduce the computational complexity, (2) utilize clustering on class labels as an intelligent method of delineating which data goes to each network, thereby making each sub-network an expert on a particular cluster, and (3) implement with or without patching for better data flexibility. It is shown that CEU-Net outperforms existing hyperspectral semantic segmentation methods, achieving better performance with and without patching compared to baseline models. Semantic segmentation models are vulnerable to adversarial attacks and need adversarial training to counteract them. Adversarial attacks are often intelligent attacks that use the knowledge of a trained classifier to create imperceptible perturbations to hurt classification accuracy. Traditional approaches to adversarial robustness focus on training or retraining a single network on attacked data, however, in the presence of multiple attacks these approaches decrease the performance compared to networks trained individually on each attack. To combat adversarial attacks in HSI semantic segmentation, we propose the Adversarial Discriminator Ensemble Network (ADE-Net) which focuses on attack type detection and adversarial robustness under a unified model to preserve per data-type weight optimally while making the overall network robust. In the proposed method, a discriminator network is used to separate data by attack type into their specific attack-expert ensemble sub-network. The ensemble and discriminator networks are trained together using a unified novel loss function to share information between each network. Our approach allows for the presence of multiple attacks mixed together while also labeling attack types during testing. In this thesis, we experimentally show that ADE-Net outperforms the baseline, which is a single network adversarially trained under a mix of multiple attacks, for popular HSI datasets

Evaluation of Multi-Frequency SAR Images for Tropical Land Cover Mapping

Earth Observation (EO) data plays a major role in supporting surveying compliance of several multilateral environmental treaties, such as UN-REDD+ (United Nations Reducing Emissions from Deforestation and Degradation). In this context, land cover maps of remote sensing data are the most commonly used EO products and development of adequate classification strategies is an ongoing research topic. However, the availability of meaningful multispectral data sets can be limited due to cloud cover, particularly in the tropics. In such regions, the use of SAR systems (Synthetic Aperture Radar), which are nearly independent form weather conditions, is particularly promising. With an ever-growing number of SAR satellites, as well as the increasing accessibility of SAR data, potentials for multi-frequency remote sensing are becoming numerous. In our study, we evaluate the synergistic contribution of multitemporal L-, C-, and X-band data to tropical land cover mapping. We compare classification outcomes of ALOS-2, RADARSAT-2, and TerraSAR-X datasets for a study site in the Brazilian Amazon using a wrapper approach. After preprocessing and calculation of GLCM texture (Grey Level Co-Occurence), the wrapper utilizes Random Forest classifications to estimate scene importance. Comparing the contribution of different wavelengths, ALOS-2 data perform best in terms of overall classification accuracy, while the classification of TerraSAR-X data yields higher accuracies when compared to the results achieved by RADARSAT-2. Moreover, the wrapper underlines potentials of multi-frequency classification as integration of multi-frequency images is always preferred over multi-temporal, mono-frequent composites. We conclude that, despite distinct advantages of certain sensors, for land cover classification, multi- sensoral integration is beneficial

Artificial Neural Networks and Evolutionary Computation in Remote Sensing

Artificial neural networks (ANNs) and evolutionary computation methods have been successfully applied in remote sensing applications since they offer unique advantages for the analysis of remotely-sensed images. ANNs are effective in finding underlying relationships and structures within multidimensional datasets. Thanks to new sensors, we have images with more spectral bands at higher spatial resolutions, which clearly recall big data problems. For this purpose, evolutionary algorithms become the best solution for analysis. This book includes eleven high-quality papers, selected after a careful reviewing process, addressing current remote sensing problems. In the chapters of the book, superstructural optimization was suggested for the optimal design of feedforward neural networks, CNN networks were deployed for a nanosatellite payload to select images eligible for transmission to ground, a new weight feature value convolutional neural network (WFCNN) was applied for fine remote sensing image segmentation and extracting improved land-use information, mask regional-convolutional neural networks (Mask R-CNN) was employed for extracting valley fill faces, state-of-the-art convolutional neural network (CNN)-based object detection models were applied to automatically detect airplanes and ships in VHR satellite images, a coarse-to-fine detection strategy was employed to detect ships at different sizes, and a deep quadruplet network (DQN) was proposed for hyperspectral image classification

A Review on Deep Learning in UAV Remote Sensing

Deep Neural Networks (DNNs) learn representation from data with an impressive capability, and brought important breakthroughs for processing images, time-series, natural language, audio, video, and many others. In the remote sensing field, surveys and literature revisions specifically involving DNNs algorithms' applications have been conducted in an attempt to summarize the amount of information produced in its subfields. Recently, Unmanned Aerial Vehicles (UAV) based applications have dominated aerial sensing research. However, a literature revision that combines both "deep learning" and "UAV remote sensing" thematics has not yet been conducted. The motivation for our work was to present a comprehensive review of the fundamentals of Deep Learning (DL) applied in UAV-based imagery. We focused mainly on describing classification and regression techniques used in recent applications with UAV-acquired data. For that, a total of 232 papers published in international scientific journal databases was examined. We gathered the published material and evaluated their characteristics regarding application, sensor, and technique used. We relate how DL presents promising results and has the potential for processing tasks associated with UAV-based image data. Lastly, we project future perspectives, commentating on prominent DL paths to be explored in the UAV remote sensing field. Our revision consists of a friendly-approach to introduce, commentate, and summarize the state-of-the-art in UAV-based image applications with DNNs algorithms in diverse subfields of remote sensing, grouping it in the environmental, urban, and agricultural contexts.Comment: 38 pages, 10 figure