Big data analytics for preventive medicine

© 2019, Springer-Verlag London Ltd., part of Springer Nature. Medical data is one of the most rewarding and yet most complicated data to analyze. How can healthcare providers use modern data analytics tools and technologies to analyze and create value from complex data? Data analytics, with its promise to efficiently discover valuable pattern by analyzing large amount of unstructured, heterogeneous, non-standard and incomplete healthcare data. It does not only forecast but also helps in decision making and is increasingly noticed as breakthrough in ongoing advancement with the goal is to improve the quality of patient care and reduces the healthcare cost. The aim of this study is to provide a comprehensive and structured overview of extensive research on the advancement of data analytics methods for disease prevention. This review first introduces disease prevention and its challenges followed by traditional prevention methodologies. We summarize state-of-the-art data analytics algorithms used for classification of disease, clustering (unusually high incidence of a particular disease), anomalies detection (detection of disease) and association as well as their respective advantages, drawbacks and guidelines for selection of specific model followed by discussion on recent development and successful application of disease prevention methods. The article concludes with open research challenges and recommendations

GWO-FI: A novel machine learning framework by combining Gray Wolf Optimizer and Frequent Itemsets to diagnose and investigate effective factors on In-Hospital Mortality and Length of Stay among Kermanshahian Cardiovascular Disease patients

Investigation and analysis of patient outcomes, including in-hospital mortality and length of stay, are crucial for assisting clinicians in determining a patient's result at the outset of their hospitalization and for assisting hospitals in allocating their resources. This paper proposes an approach based on combining the well-known gray wolf algorithm with frequent items extracted by association rule mining algorithms. First, original features are combined with the discriminative extracted frequent items. The best subset of these features is then chosen, and the parameters of the used classification algorithms are also adjusted, using the gray wolf algorithm. This framework was evaluated using a real dataset made up of 2816 patients from the Imam Ali Kermanshah Hospital in Iran. The study's findings indicate that low Ejection Fraction, old age, high CPK values, and high Creatinine levels are the main contributors to patients' mortality. Several significant and interesting rules related to mortality in hospitals and length of stay have also been extracted and presented. Additionally, the accuracy, sensitivity, specificity, and auroc of the proposed framework for the diagnosis of mortality in the hospital using the SVM classifier were 0.9961, 0.9477, 0.9992, and 0.9734, respectively. According to the framework's findings, adding frequent items as features considerably improves classification accuracy.Comment: 14 pages, 2 figures, 9 table

CFLCA: High Performance based Heart disease Prediction System using Fuzzy Learning with Neural Networks

Human Diseases are increasing rapidly in today’s generation mainly due to the life style of people like poor diet, lack of exercises, drugs and alcohol consumption etc. But the most spreading disease that is commonly around 80% of people death direct and indirectly heart disease basis. In future (approximately after 10 years) maximum number of people may expire cause of heart diseases. Due to these reasons, many of researchers providing enormous remedy, data analysis in various proposed technologies for diagnosing heart diseases with plenty of medical data which is related to heart disease. In field of Medicine regularly receives very wide range of medical data in the form of text, image, audio, video, signal pockets, etc. This database contains raw dataset which consist of inconsistent and redundant data. The health care system is no doubt very rich in aspect of storing data but at the same time very poor in fetching knowledge. Data mining (DM) methods can help in extracting a valuable knowledge by applying DM terminologies like clustering, regression, segmentation, classification etc. After the collection of data when the dataset becomes larger and more complex than data mining algorithms and clustering algorithms (D-Tree, Neural Networks, K-means, etc.) are used. To get accuracy and precision values improved with proposed method of Cognitive Fuzzy Learning based Clustering Algorithm (CFLCA) method. CFLCA methodology creates advanced meta indexing for n-dimensional unstructured data. The heart disease dataset used after data enrichment and feature engineering with UCI machine learning algorithm, attain high level accurate and prediction rate. Through this proposed CFLCA algorithm is having high accuracy, precision and recall values of data analysis for heart diseases detection

A comprehensive study on disease risk predictions in machine learning

Over recent years, multiple disease risk prediction models have been developed. These models use various patient characteristics to estimate the probability of outcomes over a certain period of time and hold the potential to improve decision making and individualize care. Discovering hidden patterns and interactions from medical databases with growing evaluation of the disease prediction model has become crucial. It needs many trials in traditional clinical findings that could complicate disease prediction. Comprehensive survey on different strategies used to predict disease is conferred in this paper. Applying these techniques to healthcare data, has improvement of risk prediction models to find out the patients who would get benefit from disease management programs to reduce hospital readmission and healthcare cost, but the results of these endeavours have been shifted

Deep Learning in Cardiology

The medical field is creating large amount of data that physicians are unable to decipher and use efficiently. Moreover, rule-based expert systems are inefficient in solving complicated medical tasks or for creating insights using big data. Deep learning has emerged as a more accurate and effective technology in a wide range of medical problems such as diagnosis, prediction and intervention. Deep learning is a representation learning method that consists of layers that transform the data non-linearly, thus, revealing hierarchical relationships and structures. In this review we survey deep learning application papers that use structured data, signal and imaging modalities from cardiology. We discuss the advantages and limitations of applying deep learning in cardiology that also apply in medicine in general, while proposing certain directions as the most viable for clinical use.Comment: 27 pages, 2 figures, 10 table

Machine learning approaches for early DRG classification and resource allocation

Recent research has highlighted the need for upstream planning in healthcare service delivery systems, patient scheduling, and resource allocation in the hospital inpatient setting. This study examines the value of upstream planning within hospital-wide resource allocation decisions based on machine learning (ML) and mixed-integer programming (MIP), focusing on prediction of diagnosis-related groups (DRGs) and the use of these predictions for allocating scarce hospital resources. DRGs are a payment scheme employed at patients’ discharge, where the DRG and length of stay determine the revenue that the hospital obtains. We show that early and accurate DRG classification using ML methods, incorporated into an MIP-based resource allocation model, can increase the hospital’s contribution margin, the number of admitted patients, and the utilization of resources such as operating rooms and beds. We test these methods on hospital data containing more than 16,000 inpatient records and demonstrate improved DRG classification accuracy as compared to the hospital’s current approach. The largest improvements were observed at and before admission, when information such as procedures and diagnoses is typically incomplete, but performance was improved even after a substantial portion of the patient’s length of stay, and under multiple scenarios making different assumptions about the available information. Using the improved DRG predictions within our resource allocation model improves contribution margin by 2.9% and the utilization of scarce resources such as operating rooms and beds from 66.3% to 67.3% and from 70.7% to 71.7%, respectively. This enables 9.0% more nonurgent elective patients to be admitted as compared to the baseline

Sample Size in Natural Language Processing within Healthcare Research

Sample size calculation is an essential step in most data-based disciplines. Large enough samples ensure representativeness of the population and determine the precision of estimates. This is true for most quantitative studies, including those that employ machine learning methods, such as natural language processing, where free-text is used to generate predictions and classify instances of text. Within the healthcare domain, the lack of sufficient corpora of previously collected data can be a limiting factor when determining sample sizes for new studies. This paper tries to address the issue by making recommendations on sample sizes for text classification tasks in the healthcare domain. Models trained on the MIMIC-III database of critical care records from Beth Israel Deaconess Medical Center were used to classify documents as having or not having Unspecified Essential Hypertension, the most common diagnosis code in the database. Simulations were performed using various classifiers on different sample sizes and class proportions. This was repeated for a comparatively less common diagnosis code within the database of diabetes mellitus without mention of complication. Smaller sample sizes resulted in better results when using a K-nearest neighbours classifier, whereas larger sample sizes provided better results with support vector machines and BERT models. Overall, a sample size larger than 1000 was sufficient to provide decent performance metrics. The simulations conducted within this study provide guidelines that can be used as recommendations for selecting appropriate sample sizes and class proportions, and for predicting expected performance, when building classifiers for textual healthcare data. The methodology used here can be modified for sample size estimates calculations with other datasets.Comment: Submitted to Journal of Biomedical Informatic

Detection and prediction problems with applications in personalized health care

The United States health-care system is considered to be unsustainable due to its unbearably high cost. Many of the resources are spent on acute conditions rather than aiming at preventing them. Preventive medicine methods, therefore, are viewed as a potential remedy since they can help reduce the occurrence of acute health episodes. The work in this dissertation tackles two distinct problems related to the prevention of acute disease. Specifically, we consider: (1) early detection of incorrect or abnormal postures of the human body and (2) the prediction of hospitalization due to heart related diseases. The solution to the former problem could be used to prevent people from unexpected injuries or alert caregivers in the event of a fall. The latter study could possibly help improve health outcomes and save considerable costs due to preventable hospitalizations. For body posture detection, we place wireless sensor nodes on different parts of the human body and use the pairwise measurements of signal strength corresponding to all sensor transmitter/receiver pairs to estimate body posture. We develop a composite hypothesis testing approach which uses a Generalized Likelihood Test (GLT) as the decision rule. The GLT distinguishes between a set of probability density function (pdf) families constructed using a custom pdf interpolation technique. The GLT is compared with the simple Likelihood Test and Multiple Support Vector Machines. The measurements from the wireless sensor nodes are highly variable and these methods have different degrees of adaptability to this variability. Besides, these methods also handle multiple observations differently. Our analysis and experimental results suggest that GLT is more accurate and suitable for the problem. For hospitalization prediction, our objective is to explore the possibility of effectively predicting heart-related hospitalizations based on the available medical history of the patients. We extensively explored the ways of extracting information from patients' Electronic Health Records (EHRs) and organizing the information in a uniform way across all patients. We applied various machine learning algorithms including Support Vector Machines, AdaBoost with Trees, and Logistic Regression adapted to the problem at hand. We also developed a new classifier based on a variant of the likelihood ratio test. The new classifier has a classification performance competitive with those more complex alternatives, but has the additional advantage of producing results that are more interpretable. Following this direction of increasing interpretability, which is important in the medical setting, we designed a new method that discovers hidden clusters and, at the same time, makes decisions. This new method introduces an alternating clustering and classification approach with guaranteed convergence and explicit performance bounds. Experimental results with actual EHRs from the Boston Medical Center demonstrate prediction rate of 82% under 30% false alarm rate, which could lead to considerable savings when used in practice