1,472 research outputs found

    Automated Distinct Bone Segmentation from Computed Tomography Images using Deep Learning

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    Large-scale CT scans are frequently performed for forensic and diagnostic purposes, to plan and direct surgical procedures, and to track the development of bone-related diseases. This often involves radiologists who have to annotate bones manually or in a semi-automatic way, which is a time consuming task. Their annotation workload can be reduced by automated segmentation and detection of individual bones. This automation of distinct bone segmentation not only has the potential to accelerate current workflows but also opens up new possibilities for processing and presenting medical data for planning, navigation, and education. In this thesis, we explored the use of deep learning for automating the segmentation of all individual bones within an upper-body CT scan. To do so, we had to find a network architec- ture that provides a good trade-off between the problem’s high computational demands and the results’ accuracy. After finding a baseline method and having enlarged the dataset, we set out to eliminate the most prevalent types of error. To do so, we introduced an novel method called binary-prediction-enhanced multi-class (BEM) inference, separating the task into two: Distin- guishing bone from non-bone is conducted separately from identifying the individual bones. Both predictions are then merged, which leads to superior results. Another type of error is tack- led by our developed architecture, the Sneaky-Net, which receives additional inputs with larger fields of view but at a smaller resolution. We can thus sneak more extensive areas of the input into the network while keeping the growth of additional pixels in check. Overall, we present a deep-learning-based method that reliably segments most of the over one hundred distinct bones present in upper-body CT scans in an end-to-end trained matter quickly enough to be used in interactive software. Our algorithm has been included in our groups virtual reality medical image visualisation software SpectoVR with the plan to be used as one of the puzzle piece in surgical planning and navigation, as well as in the education of future doctors

    2023-2024 Catalog

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    The 2023-2024 Governors State University Undergraduate and Graduate Catalog is a comprehensive listing of current information regarding:Degree RequirementsCourse OfferingsUndergraduate and Graduate Rules and Regulation

    Towards a muon collider

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    A muon collider would enable the big jump ahead in energy reach that is needed for a fruitful exploration of fundamental interactions. The challenges of producing muon collisions at high luminosity and 10 TeV centre of mass energy are being investigated by the recently-formed International Muon Collider Collaboration. This Review summarises the status and the recent advances on muon colliders design, physics and detector studies. The aim is to provide a global perspective of the field and to outline directions for future work

    The 2023 wearable photoplethysmography roadmap

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    Photoplethysmography is a key sensing technology which is used in wearable devices such as smartwatches and fitness trackers. Currently, photoplethysmography sensors are used to monitor physiological parameters including heart rate and heart rhythm, and to track activities like sleep and exercise. Yet, wearable photoplethysmography has potential to provide much more information on health and wellbeing, which could inform clinical decision making. This Roadmap outlines directions for research and development to realise the full potential of wearable photoplethysmography. Experts discuss key topics within the areas of sensor design, signal processing, clinical applications, and research directions. Their perspectives provide valuable guidance to researchers developing wearable photoplethysmography technology

    Introduction to Facial Micro Expressions Analysis Using Color and Depth Images: A Matlab Coding Approach (Second Edition, 2023)

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    The book attempts to introduce a gentle introduction to the field of Facial Micro Expressions Recognition (FMER) using Color and Depth images, with the aid of MATLAB programming environment. FMER is a subset of image processing and it is a multidisciplinary topic to analysis. So, it requires familiarity with other topics of Artifactual Intelligence (AI) such as machine learning, digital image processing, psychology and more. So, it is a great opportunity to write a book which covers all of these topics for beginner to professional readers in the field of AI and even without having background of AI. Our goal is to provide a standalone introduction in the field of MFER analysis in the form of theorical descriptions for readers with no background in image processing with reproducible Matlab practical examples. Also, we describe any basic definitions for FMER analysis and MATLAB library which is used in the text, that helps final reader to apply the experiments in the real-world applications. We believe that this book is suitable for students, researchers, and professionals alike, who need to develop practical skills, along with a basic understanding of the field. We expect that, after reading this book, the reader feels comfortable with different key stages such as color and depth image processing, color and depth image representation, classification, machine learning, facial micro-expressions recognition, feature extraction and dimensionality reduction. The book attempts to introduce a gentle introduction to the field of Facial Micro Expressions Recognition (FMER) using Color and Depth images, with the aid of MATLAB programming environment.Comment: This is the second edition of the boo

    A review of technical factors to consider when designing neural networks for semantic segmentation of Earth Observation imagery

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    Semantic segmentation (classification) of Earth Observation imagery is a crucial task in remote sensing. This paper presents a comprehensive review of technical factors to consider when designing neural networks for this purpose. The review focuses on Convolutional Neural Networks (CNNs), Recurrent Neural Networks (RNNs), Generative Adversarial Networks (GANs), and transformer models, discussing prominent design patterns for these ANN families and their implications for semantic segmentation. Common pre-processing techniques for ensuring optimal data preparation are also covered. These include methods for image normalization and chipping, as well as strategies for addressing data imbalance in training samples, and techniques for overcoming limited data, including augmentation techniques, transfer learning, and domain adaptation. By encompassing both the technical aspects of neural network design and the data-related considerations, this review provides researchers and practitioners with a comprehensive and up-to-date understanding of the factors involved in designing effective neural networks for semantic segmentation of Earth Observation imagery.Comment: 145 pages with 32 figure

    Semi-automated learning strategies for large-scale segmentation of histology and other big bioimaging stacks and volumes

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    Labelled high-resolution datasets are becoming increasingly common and necessary in different areas of biomedical imaging. Examples include: serial histology and ex-vivo MRI for atlas building, OCT for studying the human brain, and micro X-ray for tissue engineering. Labelling such datasets, typically, requires manual delineation of a very detailed set of regions of interest on a large number of sections or slices. This process is tedious, time-consuming, not reproducible and rather inefficient due to the high similarity of adjacent sections. In this thesis, I explore the potential of a semi-automated slice level segmentation framework and a suggestive region level framework which aim to speed up the segmentation process of big bioimaging datasets. The thesis includes two well validated, published, and widely used novel methods and one algorithm which did not yield an improvement compared to the current state-of the-art. The slice-wise method, SmartInterpol, consists of a probabilistic model for semi-automated segmentation of stacks of 2D images, in which the user manually labels a sparse set of sections (e.g., one every n sections), and lets the algorithm complete the segmentation for other sections automatically. The proposed model integrates in a principled manner two families of segmentation techniques that have been very successful in brain imaging: multi-atlas segmentation and convolutional neural networks. Labelling every structure on a sparse set of slices is not necessarily optimal, therefore I also introduce a region level active learning framework which requires the labeller to annotate one region of interest on one slice at the time. The framework exploits partial annotations, weak supervision, and realistic estimates of class and section-specific annotation effort in order to greatly reduce the time it takes to produce accurate segmentations for large histological datasets. Although both frameworks have been created targeting histological datasets, they have been successfully applied to other big bioimaging datasets, reducing labelling effort by up to 60−70% without compromising accuracy

    Production and characterisation of dipolar Bose–Einstein condensates

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    Remarkable progress in the field of ultracold atoms has enabled the study of a great variety of topics in many-body quantum mechanics. The precise control of key parameters, such as interactions, temperature, density, internal and external degrees of freedom, dimensionality and the trapping geometry makes them a powerful and flexible experimental platform. The ability to create degenerate samples of atoms which feature long-range and anisotropic dipole–dipole interactions besides the more conventional short-range and isotropic contact interactions drew considerable attention, enabling the creation of quantum droplets and a supersolid phase. This thesis reports on experimental and theoretical progress in investigating dipolar many-body quantum systems. We present an overview of our experimental apparatus and the techniques used for obtaining a Bose–Einstein condensate (BEC) of erbium. We then discuss our experimental sequence for producing a quantum degenerate gas, creating a quasi-pure BEC with 2.2 x 10^5 atoms. To optimise the production of erbium BECs, we explore density- and temperature-dependent losses in 166Er and identify six previously unreported resonant loss features. Finally, to enable studies of density-dependent phenomena, we present a theoretical investigation of dipolar condensates in box-like traps, where we explore stability and how one can use it to replicate properties of an infinite, homogeneous system to study dipolar physics. We found that traps with hard walls trigger roton-like density oscillations even if the bulk of the system is far from the roton regime, so smoother potentials are better suited to recreate homogeneous conditions. This sets the ground for future experiments, where the atoms will be loaded into a box trap to enable studies of systems which are tightly trapped in one direction but homogeneous in the other two

    Artificial Intelligence for the Edge Computing Paradigm.

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    With modern technologies moving towards the internet of things where seemingly every financial, private, commercial and medical transaction being carried out by portable and intelligent devices; Machine Learning has found its way into every smart device and application possible. However, Machine Learning cannot be used on the edge directly due to the limited capabilities of small and battery-powered modules. Therefore, this thesis aims to provide light-weight automated Machine Learning models which are applied on a standard edge device, the Raspberry Pi, where one framework aims to limit parameter tuning while automating feature extraction and a second which can perform Machine Learning classification on the edge traditionally, and can be used additionally for image-based explainable Artificial Intelligence. Also, a commercial Artificial Intelligence software have been ported to work in a client/server setups on the Raspberry Pi board where it was incorporated in all of the Machine Learning frameworks which will be presented in this thesis. This dissertation also introduces multiple algorithms that can convert images into Time-series for classification and explainability but also introduces novel Time-series feature extraction algorithms that are applied to biomedical data while introducing the concept of the Activation Engine, which is a post-processing block that tunes Neural Networks without the need of particular experience in Machine Leaning. Also, a tree-based method for multiclass classification has been introduced which outperforms the One-to-Many approach while being less complex that the One-to-One method.\par The results presented in this thesis exhibit high accuracy when compared with the literature, while remaining efficient in terms of power consumption and the time of inference. Additionally the concepts, methods or algorithms that were introduced are particularly novel technically, where they include: • Feature extraction of professionally annotated, and poorly annotated time-series. • The introduction of the Activation Engine post-processing block. • A model for global image explainability with inference on the edge. • A tree-based algorithm for multiclass classification
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