A Survey on Deep Learning in Medical Image Analysis

Deep learning algorithms, in particular convolutional networks, have rapidly become a methodology of choice for analyzing medical images. This paper reviews the major deep learning concepts pertinent to medical image analysis and summarizes over 300 contributions to the field, most of which appeared in the last year. We survey the use of deep learning for image classification, object detection, segmentation, registration, and other tasks and provide concise overviews of studies per application area. Open challenges and directions for future research are discussed.Comment: Revised survey includes expanded discussion section and reworked introductory section on common deep architectures. Added missed papers from before Feb 1st 201

Automatic annotation for weakly supervised learning of detectors

PhDObject detection in images and action detection in videos are among the most widely studied computer vision problems, with applications in consumer photography, surveillance, and automatic media tagging. Typically, these standard detectors are fully supervised, that is they require a large body of training data where the locations of the objects/actions in images/videos have been manually annotated. With the emergence of digital media, and the rise of high-speed internet, raw images and video are available for little to no cost. However, the manual annotation of object and action locations remains tedious, slow, and expensive. As a result there has been a great interest in training detectors with weak supervision where only the presence or absence of object/action in image/video is needed, not the location. This thesis presents approaches for weakly supervised learning of object/action detectors with a focus on automatically annotating object and action locations in images/videos using only binary weak labels indicating the presence or absence of object/action in images/videos. First, a framework for weakly supervised learning of object detectors in images is presented. In the proposed approach, a variation of multiple instance learning (MIL) technique for automatically annotating object locations in weakly labelled data is presented which, unlike existing approaches, uses inter-class and intra-class cue fusion to obtain the initial annotation. The initial annotation is then used to start an iterative process in which standard object detectors are used to refine the location annotation. Finally, to ensure that the iterative training of detectors do not drift from the object of interest, a scheme for detecting model drift is also presented. Furthermore, unlike most other methods, our weakly supervised approach is evaluated on data without manual pose (object orientation) annotation. Second, an analysis of the initial annotation of objects, using inter-class and intra-class cues, is carried out. From the analysis, a new method based on negative mining (NegMine) is presented for the initial annotation of both object and action data. The NegMine based approach is a much simpler formulation using only inter-class measure and requires no complex combinatorial optimisation but can still meet or outperform existing approaches including the previously pre3 sented inter-intra class cue fusion approach. Furthermore, NegMine can be fused with existing approaches to boost their performance. Finally, the thesis will take a step back and look at the use of generic object detectors as prior knowledge in weakly supervised learning of object detectors. These generic object detectors are typically based on sampling saliency maps that indicate if a pixel belongs to the background or foreground. A new approach to generating saliency maps is presented that, unlike existing approaches, looks beyond the current image of interest and into images similar to the current image. We show that our generic object proposal method can be used by itself to annotate the weakly labelled object data with surprisingly high accuracy

Convolutional Patch Networks with Spatial Prior for Road Detection and Urban Scene Understanding

Classifying single image patches is important in many different applications, such as road detection or scene understanding. In this paper, we present convolutional patch networks, which are convolutional networks learned to distinguish different image patches and which can be used for pixel-wise labeling. We also show how to incorporate spatial information of the patch as an input to the network, which allows for learning spatial priors for certain categories jointly with an appearance model. In particular, we focus on road detection and urban scene understanding, two application areas where we are able to achieve state-of-the-art results on the KITTI as well as on the LabelMeFacade dataset. Furthermore, our paper offers a guideline for people working in the area and desperately wandering through all the painstaking details that render training CNs on image patches extremely difficult.Comment: VISAPP 2015 pape

Unsupervised Action Proposal Ranking through Proposal Recombination

Recently, action proposal methods have played an important role in action recognition tasks, as they reduce the search space dramatically. Most unsupervised action proposal methods tend to generate hundreds of action proposals which include many noisy, inconsistent, and unranked action proposals, while supervised action proposal methods take advantage of predefined object detectors (e.g., human detector) to refine and score the action proposals, but they require thousands of manual annotations to train. Given the action proposals in a video, the goal of the proposed work is to generate a few better action proposals that are ranked properly. In our approach, we first divide action proposal into sub-proposal and then use Dynamic Programming based graph optimization scheme to select the optimal combinations of sub-proposals from different proposals and assign each new proposal a score. We propose a new unsupervised image-based actioness detector that leverages web images and employs it as one of the node scores in our graph formulation. Moreover, we capture motion information by estimating the number of motion contours within each action proposal patch. The proposed method is an unsupervised method that neither needs bounding box annotations nor video level labels, which is desirable with the current explosion of large-scale action datasets. Our approach is generic and does not depend on a specific action proposal method. We evaluate our approach on several publicly available trimmed and un-trimmed datasets and obtain better performance compared to several proposal ranking methods. In addition, we demonstrate that properly ranked proposals produce significantly better action detection as compared to state-of-the-art proposal based methods

Fast Shadow Detection from a Single Image Using a Patched Convolutional Neural Network

In recent years, various shadow detection methods from a single image have been proposed and used in vision systems; however, most of them are not appropriate for the robotic applications due to the expensive time complexity. This paper introduces a fast shadow detection method using a deep learning framework, with a time cost that is appropriate for robotic applications. In our solution, we first obtain a shadow prior map with the help of multi-class support vector machine using statistical features. Then, we use a semantic- aware patch-level Convolutional Neural Network that efficiently trains on shadow examples by combining the original image and the shadow prior map. Experiments on benchmark datasets demonstrate the proposed method significantly decreases the time complexity of shadow detection, by one or two orders of magnitude compared with state-of-the-art methods, without losing accuracy.Comment: 6 pages, 5 figures, Submitted to IROS 201