Accurate and interpretable classification of microspectroscopy pixels using artificial neural networks

This paper addresses the problem of classifying materials from microspectroscopy at a pixel level. The challenges lie in identifying discriminatory spectral features and obtaining accurate and interpretable models relating spectra and class labels. We approach the problem by designing a supervised classifier from a tandem of Artificial Neural Network (ANN) models that identify relevant features in raw spectra and achieve high classification accuracy. The tandem of ANN models is meshed with classification rule extraction methods to lower the model complexity and to achieve interpretability of the resulting model. The contribution of the work is in designing each ANN model based on the microspectroscopy hypothesis about a discriminatory feature of a certain target class being composed of a linear combination of spectra. The novelty lies in meshing ANN and decision rule models into a tandem configuration to achieve accurate and interpretable classification results. The proposed method was evaluated using a set of broadband coherent anti-Stokes Raman scattering (BCARS) microscopy cell images (600 000 pixel-level spectra) and a reference four-class rule-based model previously created by biochemical experts. The generated classification rule-based model was on average 85% accurate measured by the DICE pixel label similarity metric, and on average 96% similar to the reference rules measured by the vector cosine metric

Learning distance to subspace for the nearest subspace methods in high-dimensional data classification

The nearest subspace methods (NSM) are a category of classification methods widely applied to classify high-dimensional data. In this paper, we propose to improve the classification performance of NSM through learning tailored distance metrics from samples to class subspaces. The learned distance metric is termed as ‘learned distance to subspace’ (LD2S). Using LD2S in the classification rule of NSM can make the samples closer to their correct class subspaces while farther away from their wrong class subspaces. In this way, the classification task becomes easier and the classification performance of NSM can be improved. The superior classification performance of using LD2S for NSM is demonstrated on three real-world high-dimensional spectral datasets

The Automatic Training of Rule Bases that Use Numerical Uncertainty Representations

The use of numerical uncertainty representations allows better modeling of some aspects of human evidential reasoning. It also makes knowledge acquisition and system development, test, and modification more difficult. We propose that where possible, the assignment and/or refinement of rule weights should be performed automatically. We present one approach to performing this training - numerical optimization - and report on the results of some preliminary tests in training rule bases. We also show that truth maintenance can be used to make training more efficient and ask some epistemological questions raised by training rule weights.Comment: Appears in Proceedings of the Third Conference on Uncertainty in Artificial Intelligence (UAI1987

Inducing Generalized Multi-Label Rules with Learning Classifier Systems

In recent years, multi-label classification has attracted a significant body of research, motivated by real-life applications, such as text classification and medical diagnoses. Although sparsely studied in this context, Learning Classifier Systems are naturally well-suited to multi-label classification problems, whose search space typically involves multiple highly specific niches. This is the motivation behind our current work that introduces a generalized multi-label rule format -- allowing for flexible label-dependency modeling, with no need for explicit knowledge of which correlations to search for -- and uses it as a guide for further adapting the general Michigan-style supervised Learning Classifier System framework. The integration of the aforementioned rule format and framework adaptations results in a novel algorithm for multi-label classification whose behavior is studied through a set of properly defined artificial problems. The proposed algorithm is also thoroughly evaluated on a set of multi-label datasets and found competitive to other state-of-the-art multi-label classification methods

The DDG^G-classifier in the functional setting

The Maximum Depth was the first attempt to use data depths instead of multivariate raw data to construct a classification rule. Recently, the DD-classifier has solved several serious limitations of the Maximum Depth classifier but some issues still remain. This paper is devoted to extending the DD-classifier in the following ways: first, to surpass the limitation of the DD-classifier when more than two groups are involved. Second to apply regular classification methods (like $k$NN, linear or quadratic classifiers, recursive partitioning,...) to DD-plots to obtain useful insights through the diagnostics of these methods. And third, to integrate different sources of information (data depths or multivariate functional data) in a unified way in the classification procedure. Besides, as the DD-classifier trick is especially useful in the functional framework, an enhanced revision of several functional data depths is done in the paper. A simulation study and applications to some classical real datasets are also provided showing the power of the new proposal.Comment: 29 pages, 6 figures, 6 tables, Supplemental R Code and Dat

A Distributed Approach towards Discriminative Distance Metric Learning

Distance metric learning is successful in discovering intrinsic relations in data. However, most algorithms are computationally demanding when the problem size becomes large. In this paper, we propose a discriminative metric learning algorithm, and develop a distributed scheme learning metrics on moderate-sized subsets of data, and aggregating the results into a global solution. The technique leverages the power of parallel computation. The algorithm of the aggregated distance metric learning (ADML) scales well with the data size and can be controlled by the partition. We theoretically analyse and provide bounds for the error induced by the distributed treatment. We have conducted experimental evaluation of ADML, both on specially designed tests and on practical image annotation tasks. Those tests have shown that ADML achieves the state-of-the-art performance at only a fraction of the cost incurred by most existing methods

Building an Efficient Intrusion Detection System Based on Feature Selection and Ensemble Classifier

Intrusion detection system (IDS) is one of extensively used techniques in a network topology to safeguard the integrity and availability of sensitive assets in the protected systems. Although many supervised and unsupervised learning approaches from the field of machine learning have been used to increase the efficacy of IDSs, it is still a problem for existing intrusion detection algorithms to achieve good performance. First, lots of redundant and irrelevant data in high-dimensional datasets interfere with the classification process of an IDS. Second, an individual classifier may not perform well in the detection of each type of attacks. Third, many models are built for stale datasets, making them less adaptable for novel attacks. Thus, we propose a new intrusion detection framework in this paper, and this framework is based on the feature selection and ensemble learning techniques. In the first step, a heuristic algorithm called CFS-BA is proposed for dimensionality reduction, which selects the optimal subset based on the correlation between features. Then, we introduce an ensemble approach that combines C4.5, Random Forest (RF), and Forest by Penalizing Attributes (Forest PA) algorithms. Finally, voting technique is used to combine the probability distributions of the base learners for attack recognition. The experimental results, using NSL-KDD, AWID, and CIC-IDS2017 datasets, reveal that the proposed CFS-BA-Ensemble method is able to exhibit better performance than other related and state of the art approaches under several metrics.Comment: To be published in Computer Networks at https://doi.org/10.1016/j.comnet.2020.10724

SkILL - a Stochastic Inductive Logic Learner

Probabilistic Inductive Logic Programming (PILP) is a rel- atively unexplored area of Statistical Relational Learning which extends classic Inductive Logic Programming (ILP). This work introduces SkILL, a Stochastic Inductive Logic Learner, which takes probabilistic annotated data and produces First Order Logic theories. Data in several domains such as medicine and bioinformatics have an inherent degree of uncer- tainty, that can be used to produce models closer to reality. SkILL can not only use this type of probabilistic data to extract non-trivial knowl- edge from databases, but it also addresses efficiency issues by introducing a novel, efficient and effective search strategy to guide the search in PILP environments. The capabilities of SkILL are demonstrated in three dif- ferent datasets: (i) a synthetic toy example used to validate the system, (ii) a probabilistic adaptation of a well-known biological metabolism ap- plication, and (iii) a real world medical dataset in the breast cancer domain. Results show that SkILL can perform as well as a deterministic ILP learner, while also being able to incorporate probabilistic knowledge that would otherwise not be considered

Causal nearest neighbor rules for optimal treatment regimes

The estimation of optimal treatment regimes is of considerable interest to precision medicine. In this work, we propose a causal $k$-nearest neighbor method to estimate the optimal treatment regime. The method roots in the framework of causal inference, and estimates the causal treatment effects within the nearest neighborhood. Although the method is simple, it possesses nice theoretical properties. We show that the causal $k$-nearest neighbor regime is universally consistent. That is, the causal $k$-nearest neighbor regime will eventually learn the optimal treatment regime as the sample size increases. We also establish its convergence rate. However, the causal $k$-nearest neighbor regime may suffer from the curse of dimensionality, i.e. performance deteriorates as dimensionality increases. To alleviate this problem, we develop an adaptive causal $k$-nearest neighbor method to perform metric selection and variable selection simultaneously. The performance of the proposed methods is illustrated in simulation studies and in an analysis of a chronic depression clinical trial

Impostor Networks for Fast Fine-Grained Recognition

In this work we introduce impostor networks, an architecture that allows to perform fine-grained recognition with high accuracy and using a light-weight convolutional network, making it particularly suitable for fine-grained applications on low-power and non-GPU enabled platforms. Impostor networks compensate for the lightness of its `backend' network by combining it with a lightweight non-parametric classifier. The combination of a convolutional network and such non-parametric classifier is trained in an end-to-end fashion. Similarly to convolutional neural networks, impostor networks can fit large-scale training datasets very well, while also being able to generalize to new data points. At the same time, the bulk of computations within impostor networks happen through nearest neighbor search in high-dimensions. Such search can be performed efficiently on a variety of architectures including standard CPUs, where deep convolutional networks are inefficient. In a series of experiments with three fine-grained datasets, we show that impostor networks are able to boost the classification accuracy of a moderate-sized convolutional network considerably at a very small computational cost