Extract and Characterize Hairpin Vortices in Turbulent Flows

Hairpin vortices are one of the most important vortical structures in turbulent flows. Extracting and characterizing hairpin vortices provides useful insight into many behaviors in turbulent flows. However, hairpin vortices have complex configurations and might be entangled with other vortices, making their extraction difficult. In this work, we introduce a framework to extract and separate hairpin vortices in shear driven turbulent flows for their study. Our method first extracts general vortical regions with a region-growing strategy based on certain vortex criteria (e.g., $\lambda_2$) and then separates those vortices with the help of progressive extraction of ($\lambda_2$) iso-surfaces in a top-down fashion. This leads to a hierarchical tree representing the spatial proximity and merging relation of vortices. After separating individual vortices, their shape and orientation information is extracted. Candidate hairpin vortices are identified based on their shape and orientation information as well as their physical characteristics. An interactive visualization system is developed to aid the exploration, classification, and analysis of hairpin vortices based on their geometric and physical attributes. We also present additional use cases of the proposed system for the analysis and study of general vortices in other types of flows.Comment: Accepted for presentation at IEEE VIS 2023. The paper will appear in IEEE Transactions on Visualization and Computer Graphic

Visual analysis of droplet dynamics in large-scale multiphase spray simulations

We present a data-driven visual analysis approach for the in-depth exploration of large numbers of droplets. Understanding droplet dynamics in sprays is of interest across many scientific fields for both simulation scientists and engineers. In this paper, we analyze large-scale direct numerical simulation datasets of the two-phase flow of non-Newtonian jets. Our interactive visual analysis approach comprises various dedicated exploration modalities that are supplemented by directly linking to ParaView. This hybrid setup supports a detailed investigation of droplets, both in the spatial domain and in terms of physical quantities . Considering a large variety of extracted physical quantities for each droplet enables investigating different aspects of interest in our data. To get an overview of different types of characteristic behaviors, we cluster massive numbers of droplets to analyze different types of occurring behaviors via domain-specific pre-aggregation, as well as different methods and parameters. Extraordinary temporal patterns are of high interest, especially to investigate edge cases and detect potential simulation issues. For this, we use a neural network-based approach to predict the development of these physical quantities and identify irregularly advected droplets

Visualization and Analysis of Flow Fields based on Clifford Convolution

Vector fields from flow visualization often containmillions of data values. It is obvious that a direct inspection of the data by the user is tedious. Therefore, an automated approach for the preselection of features is essential for a complete analysis of nontrivial flow fields. This thesis deals with automated detection, analysis, and visualization of flow features in vector fields based on techniques transfered from image processing. This work is build on rotation invariant template matching with Clifford convolution as developed in the diploma thesis of the author. A detailed analysis of the possibilities of this approach is done, and further techniques and algorithms up to a complete segmentation of vector fields are developed in the process. One of the major contributions thereby is the definition of a Clifford Fourier transform in 2D and 3D, and the proof of a corresponding convolution theorem for the Clifford convolution as well as other major theorems. This Clifford Fourier transform allows a frequency analysis of vector fields and the behavior of vectorvalued filters, as well as an acceleration of the convolution computation as a fast transform exists. The depth and precision of flow field analysis based on template matching and Clifford convolution is studied in detail for a specific application, which are flow fields measured in the wake of a helicopter rotor. Determining the features and their parameters in this data is an important step for a better understanding of the observed flow. Specific techniques dealing with subpixel accuracy and the parameters to be determined are developed on the way. To regard the flow as a superposition of simpler features is a necessity for this application as close vortices influence each other. Convolution is a linear system, so it is suited for this kind of analysis. The suitability of other flow analysis and visualization methods for this task is studied here as well. The knowledge and techniques developed for this work are brought together in the end to compute and visualize feature based segmentations of flow fields. The resulting visualizations display important structures of the flow and highlight the interesting features. Thus, a major step towards robust and automatic detection, analysis and visualization of flow fields is taken

Dual RNA sequencing (dRNA-Seq) of bacteria and their host cells

Bacterial pathogens subvert host cells by manipulating cellular pathways for survival and replication; in turn, host cells respond to the invading pathogen through cascading changes in gene expression. Deciphering these complex temporal and spatial dynamics to identify novel bacterial virulence factors or host response pathways is crucial for improved diagnostics and therapeutics. Dual RNA sequencing (dRNA-Seq) has recently been developed to simultaneously capture host and bacterial transcriptomes from an infected cell. This approach builds on the high sensitivity and resolution of RNA-Seq technology and is applicable to any bacteria that interact with eukaryotic cells, encompassing parasitic, commensal or mutualistic lifestyles. We pioneered dRNA-Seq to simultaneously capture prokaryotic and eukaryotic expression profiles of cells infected with bacteria, using in vitro Chlamydia-infected epithelial cells as proof of principle. Here we provide a detailed laboratory and bioinformatics protocol for dRNA-seq that is readily adaptable to any host-bacteria system of interest

Detection, tracking and event localization of jet stream features in 4-D atmospheric data

We introduce a novel algorithm for the efficient detection and tracking of features in spatiotemporal atmospheric data, as well as for the precise localization of the occurring genesis, lysis, merging and splitting events. The algorithm works on data given on a four-dimensional structured grid. Feature selection and clustering are based on adjustable local and global criteria, feature tracking is predominantly based on spatial overlaps of the feature's full volumes. The resulting 3-D features and the identified correspondences between features of consecutive time steps are represented as the nodes and edges of a directed acyclic graph, the event graph. Merging and splitting events appear in the event graph as nodes with multiple incoming or outgoing edges, respectively. The precise localization of the splitting events is based on a search for all grid points inside the initial 3-D feature that have a similar distance to two successive 3-D features of the next time step. The merging event is localized analogously, operating backward in time. As a first application of our method we present a climatology of upper-tropospheric jet streams and their events, based on four-dimensional wind speed data from European Centre for Medium-Range Weather Forecasts (ECMWF) analyses. We compare our results with a climatology from a previous study, investigate the statistical distribution of the merging and splitting events, and illustrate the meteorological significance of the jet splitting events with a case study. A brief outlook is given on additional potential applications of the 4-D data segmentation technique