On Randomly Projected Hierarchical Clustering with Guarantees

Hierarchical clustering (HC) algorithms are generally limited to small data instances due to their runtime costs. Here we mitigate this shortcoming and explore fast HC algorithms based on random projections for single (SLC) and average (ALC) linkage clustering as well as for the minimum spanning tree problem (MST). We present a thorough adaptive analysis of our algorithms that improve prior work from $O(N^2)$ by up to a factor of $N/(\log N)^2$ for a dataset of $N$ points in Euclidean space. The algorithms maintain, with arbitrary high probability, the outcome of hierarchical clustering as well as the worst-case running-time guarantees. We also present parameter-free instances of our algorithms.Comment: This version contains the conference paper "On Randomly Projected Hierarchical Clustering with Guarantees'', SIAM International Conference on Data Mining (SDM), 2014 and, additionally, proofs omitted in the conference versio

Spatio-Temporal Surrogates for Interaction of a Jet with High Explosives: Part II -- Clustering Extremely High-Dimensional Grid-Based Data

Building an accurate surrogate model for the spatio-temporal outputs of a computer simulation is a challenging task. A simple approach to improve the accuracy of the surrogate is to cluster the outputs based on similarity and build a separate surrogate model for each cluster. This clustering is relatively straightforward when the output at each time step is of moderate size. However, when the spatial domain is represented by a large number of grid points, numbering in the millions, the clustering of the data becomes more challenging. In this report, we consider output data from simulations of a jet interacting with high explosives. These data are available on spatial domains of different sizes, at grid points that vary in their spatial coordinates, and in a format that distributes the output across multiple files at each time step of the simulation. We first describe how we bring these data into a consistent format prior to clustering. Borrowing the idea of random projections from data mining, we reduce the dimension of our data by a factor of thousand, making it possible to use the iterative k-means method for clustering. We show how we can use the randomness of both the random projections, and the choice of initial centroids in k-means clustering, to determine the number of clusters in our data set. Our approach makes clustering of extremely high dimensional data tractable, generating meaningful cluster assignments for our problem, despite the approximation introduced in the random projections

Efficient Clustering on Riemannian Manifolds: A Kernelised Random Projection Approach

Reformulating computer vision problems over Riemannian manifolds has demonstrated superior performance in various computer vision applications. This is because visual data often forms a special structure lying on a lower dimensional space embedded in a higher dimensional space. However, since these manifolds belong to non-Euclidean topological spaces, exploiting their structures is computationally expensive, especially when one considers the clustering analysis of massive amounts of data. To this end, we propose an efficient framework to address the clustering problem on Riemannian manifolds. This framework implements random projections for manifold points via kernel space, which can preserve the geometric structure of the original space, but is computationally efficient. Here, we introduce three methods that follow our framework. We then validate our framework on several computer vision applications by comparing against popular clustering methods on Riemannian manifolds. Experimental results demonstrate that our framework maintains the performance of the clustering whilst massively reducing computational complexity by over two orders of magnitude in some cases

Hidden Variables in Bipartite Networks

We introduce and study random bipartite networks with hidden variables. Nodes in these networks are characterized by hidden variables which control the appearance of links between node pairs. We derive analytic expressions for the degree distribution, degree correlations, the distribution of the number of common neighbors, and the bipartite clustering coefficient in these networks. We also establish the relationship between degrees of nodes in original bipartite networks and in their unipartite projections. We further demonstrate how hidden variable formalism can be applied to analyze topological properties of networks in certain bipartite network models, and verify our analytical results in numerical simulations