5,194 research outputs found

    Spatial distribution, risk index, and correlation of heavy metals in the Chuhe River (Yangtze Tributary): preliminary research analysis of surface water and sediment contamination

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    This comprehensive study aimed to evaluate the water quality and sediment contamination in the Chuhe River in Nanjing. The spatial assessment of 10 samples collected in September highlighted that, in surface water, Copper (Cu) > Nickel (Ni) > Zinc (Zn) > Chromium (Cr) > Lead (Pb) > Arsenic (As) > Cadmium (Cd) > Mercury (Hg), whereas in sediments, Zn > Cr > Cu > Pb > Ni > As > Cd > Hg. The coefficient of variation (CV) for Ni and Zn in surface water was >15, whereas As, Cu, Pb, and Ni had a CV that was higher than 15 in sediments, indicating variability in contamination sources. The Pollution Load Index values ranged between 2.16 and 3.05, reflecting varying contamination levels across samples. The Geoaccumulation Index data also showed moderate-to-considerable contamination, especially for elements such as Cd and Cu. Correlation analyses in water and sediments unearthed significant relationships, with notable links between Cu and Pb in the water and strong correlations between As and Cu and between Cr and Ni in sediments. In sediments, Total Nitrogen and Phosphorus were significantly correlated with As, Cu, Pb, and Ni. The Potential Ecological Response Index for sediments indicated that they are at medium to high risk (307.47 ± 33.17) and could be potentially detrimental to aquatic life in the tributary. The tributary, influenced by agricultural runoff, residential areas, and other anthropogenic activities, showed that despite Nemerow pollution index values for water samples being below 1, sediment analysis indicated areas of concern. Principal Component Analysis (PCA) was conducted to identify the potential sources of heavy metal contamination. In surface water, shared negative loadings on PC 1 (60.11%) indicated a unified influence, likely from agricultural runoff, while PC 2 (14.26%) revealed additional complexities. Sediments exhibited a unique signature on PC 1 (67.05%), associated with cumulative agricultural impacts, with PC 2 (18.08%) providing insights into nuanced factors, such as sediment composition and dynamic interactions. These findings offer a complete insight into the Chuhe River tributary’s condition, underlining the urgency for ongoing monitoring and potential remediation measures

    The application and sustainable development of coral in traditional medicine and its chemical composition, pharmacology, toxicology, and clinical research

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    This review discusses the variety, chemical composition, pharmacological effects, toxicology, and clinical research of corals used in traditional medicine in the past two decades. At present, several types of medicinal coral resources are identified, which are used in 56 formulas such as traditional Chinese medicine, Tibetan medicine, Mongolian medicine, and Uyghur medicine. A total of 34 families and 99 genera of corals are involved in medical research, with the Alcyoniidae family and Sarcophyton genus being the main research objects. Based on the structural types of compounds and the families and genera of corals, this review summarizes the compounds primarily reported during the period, including terpenoids, steroids, nitrogen-containing compounds, and other terpenoids dominated by sesquiterpene and diterpenes. The biological activities of coral include cytotoxicity (antitumor and anticancer), anti-inflammatory, analgesic, antibacterial, antiviral, immunosuppressive, antioxidant, and neurological properties, and a detailed summary of the mechanisms underlying these activities or related targets is provided. Coral toxicity mostly occurs in the marine ornamental soft coral Zoanthidae family, with palytoxin as the main toxic compound. In addition, nonpeptide neurotoxins are extracted from aquatic corals. The compatibility of coral-related preparations did not show significant acute toxicity, but if used for a long time, it will still cause toxicity to the liver, kidneys, lungs, and other internal organs in a dose-dependent manner. In clinical applications, individual application of coral is often used as a substitute for orthopedic materials to treat diseases such as bone defects and bone hyperplasia. Second, coral is primarily available in the form of compound preparations, such as Ershiwuwei Shanhu pills and Shanhu Qishiwei pills, which are widely used in the treatment of neurological diseases such as migraine, primary headache, epilepsy, cerebral infarction, hypertension, and other cardiovascular and cerebrovascular diseases. It is undeniable that the effectiveness of coral research has exacerbated the endangered status of corals. Therefore, there should be no distinction between the advantages and disadvantages of listed endangered species, and it is imperative to completely prohibit their use and provide equal protection to help them recover to their normal numbers. This article can provide some reference for research on coral chemical composition, biological activity, chemical ecology, and the discovery of marine drug lead compounds. At the same time, it calls for people to protect endangered corals from the perspectives of prohibition, substitution, and synthesis

    Increasing Sustainable Bivalve Aquaculture Productivity Using Remote Non-Invasive Sensing and Upweller Technologies

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    The work and findings described by this thesis aim to develop technologies and approaches relevant to bivalve aquaculture, focusing on non invasive sensing to monitor bivalve shellfish, primarily the Pacific oyster (Magallana gigas). Following the introduction, Chapter 2 presents an overview of the Non Invasive Oyster Sensor (NOSy), a sensor developed at the University of Essex that records bivalve openness (gape). NOSy was conceived to automatically detect spawning as an aid to oyster growers and has proved useful in field and laboratory, work which underpins three chapters in this thesis. NOSy remains under development, and has potential for use in aquaculture, monitoring and research. Chapter 3 assesses the role of salinity in driving estuarine oyster behaviour. We replicated an estuarine tidal salinity cycle and recorded the gape of oysters exposed to it. Behaviours during the experiment did not resemble those in the estuary, suggesting that salinity alone does not drive estuarine oyster behaviour. We also discuss the challenges of controlling salinity in a laboratory, and suggest it is an under-studied area. Chapter 4 discusses land based systems for young oyster growing. Land-based systems have the potential to improve growth, condition and survival while reducing labour and maintenance costs. We trialled a system over three summers, with promising results. Reduction of localised densities improved growth rate and uniformity. Cost forecasts suggest that adoption of land based growing systems could result in substantial savings. Chapter 5 presents gaping records from an area where Blue mussels (Mytilus edulis) have become non harvestable in recent years due to contamination. We used NOSy to assess gaping patterns of the mussel population to evaluate how their behaviours affect their vulnerability to contamination. Mussels in the bay closed over low tide as a response to extremely low salinity, inferring protection from contamination by limiting the mussel’s exposure

    Computational and experimental studies on the reaction mechanism of bio-oil components with additives for increased stability and fuel quality

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    As one of the world’s largest palm oil producers, Malaysia encountered a major disposal problem as vast amount of oil palm biomass wastes are produced. To overcome this problem, these biomass wastes can be liquefied into biofuel with fast pyrolysis technology. However, further upgradation of fast pyrolysis bio-oil via direct solvent addition was required to overcome it’s undesirable attributes. In addition, the high production cost of biofuels often hinders its commercialisation. Thus, the designed solvent-oil blend needs to achieve both fuel functionality and economic targets to be competitive with the conventional diesel fuel. In this thesis, a multi-stage computer-aided molecular design (CAMD) framework was employed for bio-oil solvent design. In the design problem, molecular signature descriptors were applied to accommodate different classes of property prediction models. However, the complexity of the CAMD problem increases as the height of signature increases due to the combinatorial nature of higher order signature. Thus, a consistency rule was developed reduce the size of the CAMD problem. The CAMD problem was then further extended to address the economic aspects via fuzzy multi-objective optimisation approach. Next, a rough-set based machine learning (RSML) model has been proposed to correlate the feedstock characterisation and pyrolysis condition with the pyrolysis bio-oil properties by generating decision rules. The generated decision rules were analysed from a scientific standpoint to identify the underlying patterns, while ensuring the rules were logical. The decision rules generated can be used to select optimal feedstock composition and pyrolysis condition to produce pyrolysis bio-oil of targeted fuel properties. Next, the results obtained from the computational approaches were verified through experimental study. The generated pyrolysis bio-oils were blended with the identified solvents at various mixing ratio. In addition, emulsification of the solvent-oil blend in diesel was also conducted with the help of surfactants. Lastly, potential extensions and prospective work for this study have been discuss in the later part of this thesis. To conclude, this thesis presented the combination of computational and experimental approaches in upgrading the fuel properties of pyrolysis bio-oil. As a result, high quality biofuel can be generated as a cleaner burning replacement for conventional diesel fuel

    Population dynamics of Brachionus calyciflorus driven by the associated natural bacterioplankton

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    Zooplankton provides bacteria with a complex microhabitat richen in organic and inorganic nutrients, and the bacteria community also changes the physiochemical conditions for zooplankton, where the symbiotic relationship between them plays an important role in the nutrient cycle. However, there are few studies on the effect of associated bacteria on the population dynamics of rotifers. In order to make clear their relationships, we reconstructed the associated bacterial community in Brachionus calyciflorus culture, and examined the life history and population growth parameters, and analyzed the diversity and community composition of the associated bacteria at different growth stages of B. calyciflorus. The results showed that the addition of bacteria from natural water can promote the population growth and asexual reproduction of B. calyciflorus, but has no significant effect on sexual reproduction, exhibited by the improvement of its life expectancy at hatching, net reproduction rates and intrinsic growth rate, no significant effects on the generation time and mixis ratio of offspring. It was found that the B. calyciflorus-associated bacterial community was mainly composed of Proteobacteria, Bacteroidota, Actinobacteriota, Cyanobacteria and Firmicutes. Through correlation network analysis, the members of Burkholderiales, Pseudomonadales, Micrococcales, Caulobacterales and Bifidobacteriales were the keystone taxa of B. calyciflorus-associated bacteria. In addition, the relative abundance of some specific bacteria strains increased as the population density of B. calyciflorus increased, such as Hydrogenophaga, Acidovorax, Flavobacterium, Rheinheimera, Novosphingobium and Limnobacter, and their relative abundance increased obviously during the slow and exponential phases of population growth. Meanwhile, the relative abundance of adverse taxa (such as Elizabethkingia and Rickettsiales) decreased significantly with the increase in rotifer population density. In conclusion, the closely associated bacteria are not sufficient for the best growth of B. calyciflorus, and external bacterioplankton is necessary. Furthermore, the function of keystone and rare taxa is necessary for further exploration. The investigation of the symbiotic relationship between zooplankton-associated bacterial and bacterioplankton communities will contribute to monitoring their roles in freshwater ecosystems, and regulate the population dynamics of the micro-food web

    Spatial Distribution of Meso- and Microplastics in Floodplain Soilscapes: Novel Insights from Rural to Urban Floodplains in Central Germany

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    Plastics and especially microplastics have become an emerging threat to global ecosystems. Despite the manifold benefits and applications of the human-made material plastic, the uncontrolled release of plastics into the environment has led to a “global plastic crisis”. During the last decades it becomes apparent that this crisis leads to the presence of plastics within different environments including marine, aquatic and terrestrial systems under worldwide evidence. Furthermore, environmental plastic research was able to reveal that although plastic often ends up in oceans, the majority of plastics in the environment are transported as part of a “global plastic cycle” from the land to sea via river systems. Those river systems are not isolated in the landscape, but rather a part of an “aquatic-terrestrial interface” which also encompasses floodplains and their soilscapes. The present thesis focuses on the spatial distribution and spatio-temporal accumulation of meso- and microplastics in floodplain soilscapes following the overall objective to unravel the role of floodplain soilscapes as depositional areas of plastics within the global plastic cycle. In this context, a number of individual contributions have been published, reaching from conceptual spatial research approaches, over case studies conducted within two different floodplain soilscapes, to further opinions on the scientific benefit of plastic residues in floodplain soils. The individual contributions are linked by the major hypothesis that floodplain soilscapes act as temporal accumulation sites for plastics, driven by flood-related processes and land use over the last 70 years. To proof this major hypothesis and to overcome the lack of spatial reference in microplastics research, a geospatial sampling approach was conducted. Initial spatial data on meso- and microplastics in floodplain soils were obtained by a holistic analysis approach including the analysis of basic soil feature and metal analysis, the quantification of meso- and microplastics as well as sediment dating. Within both studied river floodplains geospatial sampling enables a detection of meso- and microplastics over the entire floodplain area and within the entire soil column reaching depths of two meters. Additionally, a frequent accumulation of plastics was found within the upper 50 cm of floodplain soils. In combination with dating of near-channel floodplain sites, it could be demonstrated that those plastic accumulations are related to recent sedimentary deposits since the 1960s. However, evidence of plastic from deeper soil layers suggests that vertical displacements in floodplain soils occur and that plastics become mobilized. Furthermore, the presence of plastics in upstream areas suggests that plastics are released to river systems and deposited via flood dynamics already in rural areas. Additionally it appears that anthropogenic impacts, such as tillage or floodplain restoration influence plastic distributions. The findings of this thesis clarify that floodplain soilscapes are part of the global plastic cycle as temporally depositional areas of plastics, but raising further questions on the mobility of plastics in soils and about the exact contribution of different environmental drivers towards plastic deposition. Finally, the present thesis indicates that the spatial reference of environmental plastic research should be rethought, in order to understand the spatial dynamics of plastics within the aquatic-terrestrial interface

    Evaluating the sustainability and resiliency of local food systems

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    With an ever-rising global population and looming environmental challenges such as climate change and soil degradation, it is imperative to increase the sustainability of food production. The drastic rise in food insecurity during the COVID-19 pandemic has further shown a pressing need to increase the resiliency of food systems. One strategy to reduce the dependence on complex, vulnerable global supply chains is to strengthen local food systems, such as by producing more food in cities. This thesis uses an interdisciplinary, food systems approach to explore aspects of sustainability and resiliency within local food systems. Lifecycle assessment (LCA) was used to evaluate how farm scale, distance to consumer, and management practices influence environmental impacts for different local agriculture models in two case study locations: Georgia, USA and England, UK. Farms were grouped based on urbanisation level and management practices, including: urban organic, peri-urban organic, rural organic, and rural conventional. A total of 25 farms and 40 crop lifecycles were evaluated, focusing on two crops (kale and tomatoes) and including impacts from seedling production through final distribution to the point of sale. Results were extremely sensitive to the allocation of composting burdens (decomposition emissions), with impact variation between organic farms driven mainly by levels of compost use. When composting burdens were attributed to compost inputs, the rural conventional category in the U.S. and the rural organic category in the UK had the lowest average impacts per kg sellable crop produced, including the lowest global warming potential (GWP). However, when subtracting avoided burdens from the municipal waste stream from compost inputs, trends reversed entirely, with urban or peri-urban farm categories having the lowest impacts (often negative) for GWP and marine eutrophication. Overall, farm management practices were the most important factor driving environmental impacts from local food supply chains. A soil health assessment was then performed on a subset of the UK farms to provide insight to ecosystem services that are not captured within LCA frameworks. Better soil health was observed in organically-farmed and uncultivated soils compared to conventionally farmed soils, suggesting higher ecosystem service provisioning as related to improved soil structure, flood mitigation, erosion control, and carbon storage. However, relatively high heavy metal concentrations were seen on urban and peri-urban farms, as well as those located in areas with previous mining activity. This implies that there are important services and disservices on farms that are not captured by LCAs. Zooming out from a focus on food production, a qualitative methodology was used to explore experiences of food insecurity and related health and social challenges during the COVID-19 pandemic. Fourteen individuals receiving emergency food parcels from a community food project in Sheffield, UK were interviewed. Results showed that maintaining food security in times of crisis requires a diverse set of individual, household, social, and place-based resources, which were largely diminished or strained during the pandemic. Drawing upon social capital and community support was essential to cope with a multiplicity of hardship, highlighting a need to develop community food infrastructure that supports ideals of mutual aid and builds connections throughout the food supply chain. Overall, this thesis shows that a range of context-specific solutions are required to build sustainable and resilient food systems. This can be supported by increasing local control of food systems and designing strategies to meet specific community needs, whilst still acknowledging a shared global responsibility to protect ecosystem, human, and planetary health

    Recombinant spidroins from infinite circRNA translation

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    Spidroins are a diverse family of peptides and the main components of spider silk. They can be used to produce sustainable, lightweight and durable materials for a large variety of medical and engineering applications. Spiders’ territorial behaviour and cannibalism precludes farming them for silk. Recombinant protein synthesis is the most promising way of producing these peptides. However, many approaches have been unsuccessful in obtaining large titres of recombinant spidroins or ones of sufficient molecular weight. The work described here is focused on expressing high molecular weight spidroins from short circular RNA molecules. Mammalian host cells were transfected with designed circular-RNA-producing plasmid vectors. A backsplicing approach was implemented to successfully circularise RNA in a variety of mammalian cell types. This approach could not express any recombinant spidroins based on a variety of qualitative protein assays. Further experiments investigated the reasons behind this. Additionally, due to the diversity of spidroins in a large number of spider lineages, there are potentially many spidroin sequences left to be discovered. A bioinformatic pipeline was developed that accepts transcriptome datasets from RNA sequencing and uses tandem repeat detection and profile HMM annotation to identify novel sequences. This pipeline was specifically designed for the identification of repeat domains in expressed sequences. 21 transcriptomes from 17 different species, encompassing a wide selection of basal and derived spider lineages, were investigated using this pipeline. Six previously undescribed spidroin sequences were discovered. This pipeline was additionally tested in the context of the suckerin protein family. These proteins have recently been investigated for their potential properties in medicine and engineering including adhesion in wet environments. The computational pipeline was able to double the number of suckerins known to date. Further phylogenetic analysis was implemented to expand on the knowledge of suckerins. This pipeline enables the identification of transcripts that may have been overlooked by more mainstream analysis methods such as pairwise homology searches. The spidroins and suckerins discovered by this pipeline may contribute to the large repertoire of potentially useful properties characteristic of this diverse peptide family
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