Models in the Cloud: Exploring Next Generation Environmental Software Systems

There is growing interest in the application of the latest trends in computing and data science methods to improve environmental science. However we found the penetration of best practice from computing domains such as software engineering and cloud computing into supporting every day environmental science to be poor. We take from this work a real need to re-evaluate the complexity of software tools and bring these to the right level of abstraction for environmental scientists to be able to leverage the latest developments in computing. In the Models in the Cloud project, we look at the role of model driven engineering, software frameworks and cloud computing in achieving this abstraction. As a case study we deployed a complex weather model to the cloud and developed a collaborative notebook interface for orchestrating the deployment and analysis of results. We navigate relatively poor support for complex high performance computing in the cloud to develop abstractions from complexity in cloud deployment and model configuration. We found great potential in cloud computing to transform science by enabling models to leverage elastic, flexible computing infrastructure and support new ways to deliver collaborative and open science

Resource provisioning in Science Clouds: Requirements and challenges

Cloud computing has permeated into the information technology industry in the last few years, and it is emerging nowadays in scientific environments. Science user communities are demanding a broad range of computing power to satisfy the needs of high-performance applications, such as local clusters, high-performance computing systems, and computing grids. Different workloads are needed from different computational models, and the cloud is already considered as a promising paradigm. The scheduling and allocation of resources is always a challenging matter in any form of computation and clouds are not an exception. Science applications have unique features that differentiate their workloads, hence, their requirements have to be taken into consideration to be fulfilled when building a Science Cloud. This paper will discuss what are the main scheduling and resource allocation challenges for any Infrastructure as a Service provider supporting scientific applications

Cloud Computing for Science

Infrastructure-as-a-Service (IaaS) Cloud computing is emerging as a viable alternative to the acquisition and management of physical resources. The Nimbus project works towards enabling scientific communities to leverage cloud computing by providing (1) an IaaS toolkit allowing providers to configure clouds, (2) user-level tools for contextualization and scaling allowing users to easily take advantage of IaaS, and (3) an extensible open source implementation of both allowing users to customize the implementation to their needs. The talk will give an overview of the challenges and potential of cloud computing projects in science as well as the way in which the Nimbus project at Argonne National Laboratory addresses them. I will also describe what attracted various scientific communities to cloud computing and give examples of how they integrated this new model into their work. Finally, I will describe how scientific projects collaborating with us inspire technological development and take advantage of various Nimbus features

Early Observations on Performance of Google Compute Engine for Scientific Computing

Although Cloud computing emerged for business applications in industry, public Cloud services have been widely accepted and encouraged for scientific computing in academia. The recently available Google Compute Engine (GCE) is claimed to support high-performance and computationally intensive tasks, while little evaluation studies can be found to reveal GCE's scientific capabilities. Considering that fundamental performance benchmarking is the strategy of early-stage evaluation of new Cloud services, we followed the Cloud Evaluation Experiment Methodology (CEEM) to benchmark GCE and also compare it with Amazon EC2, to help understand the elementary capability of GCE for dealing with scientific problems. The experimental results and analyses show both potential advantages of, and possible threats to applying GCE to scientific computing. For example, compared to Amazon's EC2 service, GCE may better suit applications that require frequent disk operations, while it may not be ready yet for single VM-based parallel computing. Following the same evaluation methodology, different evaluators can replicate and/or supplement this fundamental evaluation of GCE. Based on the fundamental evaluation results, suitable GCE environments can be further established for case studies of solving real science problems.Comment: Proceedings of the 5th International Conference on Cloud Computing Technologies and Science (CloudCom 2013), pp. 1-8, Bristol, UK, December 2-5, 201

A systematic literature review of cloud computing in eHealth

Cloud computing in eHealth is an emerging area for only few years. There needs to identify the state of the art and pinpoint challenges and possible directions for researchers and applications developers. Based on this need, we have conducted a systematic review of cloud computing in eHealth. We searched ACM Digital Library, IEEE Xplore, Inspec, ISI Web of Science and Springer as well as relevant open-access journals for relevant articles. A total of 237 studies were first searched, of which 44 papers met the Include Criteria. The studies identified three types of studied areas about cloud computing in eHealth, namely (1) cloud-based eHealth framework design (n=13); (2) applications of cloud computing (n=17); and (3) security or privacy control mechanisms of healthcare data in the cloud (n=14). Most of the studies in the review were about designs and concept-proof. Only very few studies have evaluated their research in the real world, which may indicate that the application of cloud computing in eHealth is still very immature. However, our presented review could pinpoint that a hybrid cloud platform with mixed access control and security protection mechanisms will be a main research area for developing citizen centred home-based healthcare applications

EPOBF: Energy Efficient Allocation of Virtual Machines in High Performance Computing Cloud

Cloud computing has become more popular in provision of computing resources under virtual machine (VM) abstraction for high performance computing (HPC) users to run their applications. A HPC cloud is such cloud computing environment. One of challenges of energy efficient resource allocation for VMs in HPC cloud is tradeoff between minimizing total energy consumption of physical machines (PMs) and satisfying Quality of Service (e.g. performance). On one hand, cloud providers want to maximize their profit by reducing the power cost (e.g. using the smallest number of running PMs). On the other hand, cloud customers (users) want highest performance for their applications. In this paper, we focus on the scenario that scheduler does not know global information about user jobs and user applications in the future. Users will request shortterm resources at fixed start times and non interrupted durations. We then propose a new allocation heuristic (named Energy-aware and Performance per watt oriented Bestfit (EPOBF)) that uses metric of performance per watt to choose which most energy-efficient PM for mapping each VM (e.g. maximum of MIPS per Watt). Using information from Feitelson's Parallel Workload Archive to model HPC jobs, we compare the proposed EPOBF to state of the art heuristics on heterogeneous PMs (each PM has multicore CPU). Simulations show that the EPOBF can reduce significant total energy consumption in comparison with state of the art allocation heuristics.Comment: 10 pages, in Procedings of International Conference on Advanced Computing and Applications, Journal of Science and Technology, Vietnamese Academy of Science and Technology, ISSN 0866-708X, Vol. 51, No. 4B, 201

FABRIC: A National-Scale Programmable Experimental Network Infrastructure

FABRIC is a unique national research infrastructure to enable cutting-edge and exploratory research at-scale in networking, cybersecurity, distributed computing and storage systems, machine learning, and science applications. It is an everywhere-programmable nationwide instrument comprised of novel extensible network elements equipped with large amounts of compute and storage, interconnected by high speed, dedicated optical links. It will connect a number of specialized testbeds for cloud research (NSF Cloud testbeds CloudLab and Chameleon), for research beyond 5G technologies (Platforms for Advanced Wireless Research or PAWR), as well as production high-performance computing facilities and science instruments to create a rich fabric for a wide variety of experimental activities