Analysis and prediction of seed quality using machine learning

The mainstay of the economy has always been agriculture, and the majority of tasks are still carried out without the use of modern technology. Currently, the ability of human intelligence to forecast seed quality is used. Because it lacks a validation method, the existing seed prediction analysis is ineffective. Here, we have tried to create a prediction model that uses machine learning algorithms to forecast seed quality, leading to high crop yield and high-quality harvests. For precise seed categorization, this model was created using convolutional neural networks and trained using the seed dataset. Using data that can be used to forecast the future, this model is used to learn about whether the seeds are of premium quality, standard quality, or regular quality. While testing data are employed in the algorithm’s predictive analytics, training data and validation data are used for categorization reasons. Thus, by examining the training accuracy of the convolution neural network (CNN) model and the prediction accuracy of the algorithm, the project’s primary goal is to develop the best method for the more accurate prediction of seed quality

On-the-go hyperspectral imaging under field conditions and machine learning for the classification of grapevine varieties

Grapevine varietal classification is an important plant phenotyping issue for grape growing and wine industry. This task has been achieved from destructive techniques like classic ampelography and DNA analysis under laboratory conditions. This work displays a new approach for the classification of a high number of grapevine (Vitis vinifera L.) varieties under field conditions using on-the-go hyperspectral imaging and different machine learning algorithms. On-the-go imaging was performed under natural illumination using a hyperspectral camera mounted on an all-terrain vehicle at 5 km/h. Spectra were acquired over two different leaf phenological stages on the canopy of 30 different varieties on a commercial vineyard located in La Rioja, Spain. A total of 1,200 spectral samples were generated. Support vector machines (SVM) and artificial neural networks (multilayer perceptrons, MLP) were used for the development of a large number of models, testing different algorithm parameters and spectral pre-processing techniques. Both classifiers yielded notable performance values and were able to train models with recall F1 scores and area under the receiver operating characteristic curve marks up to 0.99 for 5-fold cross validation. Statistical analyses supported that the best SVM kernel was linear and the best activation function for MLP was the hyperbolic tangent function. The prediction performance for individual varieties of MLP ranged from 0.94 to 0.99, displaying low levels of variability. In the case of SVM, slightly higher differences were obtained, ranging from 0.83 to 0.97 for individual varieties. These results support the possibility of deploying an on-the-go hyperspectral imaging system in the field capable of successfully classifying leaves from different grapevine varieties. This technology could thus be considered as a new useful non-destructive tool for plant phenotyping under field conditions.The work leading to these results has received funding from the European Union under grant agreement number 737669 (VINESCOUT project). SG would like to acknowledge the research funding FPI grant 299/2016 by Universidad de La Rioja, Gobierno de La Rioja. MD is funded by the Spanish Ministry of Economy, Industry and Competitiveness (MINECO) with a Ramon y Cajal grant RYC-2015-18429.Peer reviewe

Integrating optical imaging techniques for a novel approach to evaluate Siberian wild rye seed maturity

Advances in optical imaging technology using rapid and non-destructive methods have led to improvements in the efficiency of seed quality detection. Accurately timing the harvest is crucial for maximizing the yield of higher-quality Siberian wild rye seeds by minimizing excessive shattering during harvesting. This research applied integrated optical imaging techniques and machine learning algorithms to develop different models for classifying Siberian wild rye seeds based on different maturity stages and grain positions. The multi-source fusion of morphological, multispectral, and autofluorescence data provided more comprehensive information but also increases the performance requirements of the equipment. Therefore, we employed three filtering algorithms, namely minimal joint mutual information maximization (JMIM), information gain, and Gini impurity, and set up two control methods (feature union and no-filtering) to assess the impact of retaining only 20% of the features on the model performance. Both JMIM and information gain revealed autofluorescence and morphological features (CIELab A, CIELab B, hue and saturation), with these two filtering algorithms showing shorter run times. Furthermore, a strong correlation was observed between shoot length and morphological and autofluorescence spectral features. Machine learning models based on linear discriminant analysis (LDA), random forests (RF) and support vector machines (SVM) showed high performance (>0.78 accuracies) in classifying seeds at different maturity stages. Furthermore, it was found that there was considerable variation in the different grain positions at the maturity stage, and the K-means approach was used to improve the model performance by 5.8%-9.24%. In conclusion, our study demonstrated that feature filtering algorithms combined with machine learning algorithms offer high performance and low cost in identifying seed maturity stages and that the application of k-means techniques for inconsistent maturity improves classification accuracy. Therefore, this technique could be employed classification of seed maturity and superior physiological quality for Siberian wild rye seeds

Review on Active and Passive Remote Sensing Techniques for Road Extraction

Digital maps of road networks are a vital part of digital cities and intelligent transportation. In this paper, we provide a comprehensive review on road extraction based on various remote sensing data sources, including high-resolution images, hyperspectral images, synthetic aperture radar images, and light detection and ranging. This review is divided into three parts. Part 1 provides an overview of the existing data acquisition techniques for road extraction, including data acquisition methods, typical sensors, application status, and prospects. Part 2 underlines the main road extraction methods based on four data sources. In this section, road extraction methods based on different data sources are described and analysed in detail. Part 3 presents the combined application of multisource data for road extraction. Evidently, different data acquisition techniques have unique advantages, and the combination of multiple sources can improve the accuracy of road extraction. The main aim of this review is to provide a comprehensive reference for research on existing road extraction technologies.Peer reviewe

Application of hyperspectral imaging combined with chemometrics for the non-destructive evaluation of the quality of fruit in postharvest

Tesis por compendio[ES] El objetivo de esta tesis doctoral es evaluar la técnica de imagen hiperespectral en el rango visible e infrarrojo cercano, en combinación con técnicas quimiométricas para la evaluación de la calidad de la fruta en poscosecha de manera eficaz y sostenible. Con este fin, se presentan diferentes estudios en los que se evalúa la calidad de algunas frutas que por su valor económico, estratégico o social, son de especial importancia en la Comunidad Valenciana como son el caqui 'Rojo Brillante', la granada 'Mollar de Elche', el níspero 'Algerie' o diferentes cultivares de nectarina. En primer lugar se llevó a cabo la monitorización de la calidad poscosecha de nectarinas 'Big Top' y 'Magique' usando imagen hiperespectral en reflectancia y transmitancia. Al mismo tiempo se evaluó la transmitancia para la detección de huesos abiertos. Se llevó a cabo también un estudio para distinguir los cultivares 'Big Top' y "Diamond Ray", los cuales poseen un aspecto muy similar pero sabor diferente. En cuanto al caqui 'Rojo Brillante', la imagen hiperespectral fue estudiada por una parte para monitorear su madurez, y por otra parte para evaluar la astringencia de esta fruta, que debe ser completamente eliminada antes de su comercialización. Las propiedades físico-químicas de la granada 'Mollar de Elche' fueron evaluadas usando imagen de color e hiperespectral durante su madurez usando la información de la fruta intacta y de los arilos. Finalmente, esta técnica se usó para caracterizar e identificar los defectos internos y externos del níspero 'Algerie'. En la predicción de los índices de calidad IQI y RPI usando imagen en reflectancia y transmitancia se obtuvieron valores de R2 alrededor de 0,90 y en la discriminación por firmeza, una precisión entorno al 95 % usando longitudes de onda seleccionadas. En cuanto a la detección de huesos abiertos, el uso de la imagen hiperespectral en transmitancia obtuvo un 93,5 % de clasificación correcta de frutas con hueso normal y 100 % con hueso abierto usando modelos PLS-DA y 7 longitudes de onda. Los resultados obtenidos en la clasificación de los cultivares 'Big Top' y 'Diamond Ray' mostraron una fiabilidad superior al 96,0 % mediante el uso de modelos PLS-DA y 14 longitudes de onda seleccionadas, superando a la imagen de color (56,9 %) y a un panel entrenado (54,5 %). Con respecto al caqui, los resultados obtenidos indicaron que es posible distinguir entre tres estados de madurez con una precisión del 96,0 % usando modelos QDA y se predijo su firmeza obteniendo un valor de R2 de 0,80 usando PLS-R. En cuanto a la astringencia, se llevaron a cabo dos estudios similares en los que en el primero se discriminó la fruta de acuerdo al tiempo de tratamiento con altas concentraciones de CO2 con una precisión entorno al 95,0 % usando QDA. En el segundo se discriminó la fruta de acuerdo a un valor de contenido en taninos (0,04 %) y se determinó qué área de la fruta era mejor para realizar esta discriminación. Así se obtuvo una precisión del 86,9 % usando la zona media y 23 longitudes de onda. Los resultados obtenidos para la granada indicaron que la imagen de color e hiperespectral poseen una precisión similar en la predicción de las propiedades fisicoquímicas usando PLS-R y la información de la fruta intacta. Sin embargo, cuando se usó la información de los arilos, la imagen hiperespectral fue más precisa. En cuanto a la discriminación del estado de madurez usando PLS-DA, la imagen hiperespectral ofreció mayor precisión, 95,0 %, usando la información de la fruta intacta y del 100 % usando la de los arilos. Finalmente, los resultados obtenidos para el níspero indicaron que la imagen hiperespectral junto con el método de clasificación XGBOOST pudo discriminar entre muestras con y sin defectos con una precisión del 97,5 % y entre muestras sin defectos o con defectos internos o externos con una precisión del 96,7 %. Además fue posible distinguir entre los dife[CA] L'objectiu de la present tesi doctoral se centra en avaluar la capacitat de la imatge hiperespectral en el rang visible i infraroig pròxim, en combinació amb mètodes quimiomètrics, per a l'avaluació de la qualitat de la fruita en post collita de manera eficaç i sostenible. A aquest efecte, es presenten diferents estudis en els quals s'avalua la qualitat d'algunes fruites que pel seu valor econòmic, estratègic o social, són d'especial importància a la Comunitat Valenciana com són el caqui 'Rojo Brillante', la magrana 'Mollar de Elche', el nispro 'Algerie' o diferents cultivares de nectarina. En primer lloc es va dur a terme la monitorització de la qualitat post collita de nectarines 'Big Top' i 'Magique' per mitjà d'imatge hiperespectral en reflectància i trasnmitancia. Així mateix es va avaluar la transmitància per a la detecció d'ossos oberts. Es va dur a terme també un estudi per distingir els cultivares 'Big Top' i 'Diamond Ray', els quals posseeixen un aspecte molt semblant però sabor diferent. Pel que fa al caqui 'Rojo Brillante', la imatge hiperespectral va ser estudiada d'una banda per a monitoritzar la seua maduresa, i per un altre costat per avaluar l'astringència, que ha de ser completament eliminada abans de la seua comercialització. Les propietats fisicoquímiques de la magrana 'Mollar de Elche' van ser avaluades per la imatge de color i hiperespectral durant la seua maduresa usant la informació de la fruita intacta i els arils. Finalment, aquesta tècnica es va fer servir per caracteritzar i identificar els defectes interns i externs del nispro 'Algerie'. En la predicció dels índexs de qualitat IQI i RPI usant imatge en reflectància com en trasnmitancia es van obtindre valors de R2 al voltant de 0,90 i en la discriminació per fermesa una precisió entorn del 95,0 % utilitzant longituds d'ona seleccionades. Pel que fa a la detecció d'ossos oberts, l'ús de la imatge hiperespectral en transmitància va obtindre un 93,5 % classificació correcta de fruites amb os normal i 100 % amb os obert usant models PLS-DA i 7 longituds d'ona. Els resultats obtinguts en la classificació dels cultivares 'Big Top' i 'Diamond Ray' van mostrar una fiabilitat superior al 96,0 % per mitjà de l'ús de models PLS-DA i 14 longituds d'ona, superant a la imatge de color (56,9 %) i a un panell sensorial entrenat (54,5 %). Quant al caqui, els resultats obtinguts van indicar que és possible distingir entre tres estats de maduresa amb una precisió del 96,0 % usant models QDA i es va predir la seua fermesa obtenint un valor de R2 de 0,80 usant PLS-R. Pel que fa a l'astringència, es van dur a terme dos estudis similars en què el primer es va discriminar la fruita d'acord al temps de tractament amb altes concentracions de CO2 amb una precisió al voltant del 95,0 % usant QDA. En el segon, es va discriminar la fruita d'acord a un valor de contingut en tanins (0,04 %) i es va determinar quina part de la fruita era millor per a realitzar aquesta discriminació. Així es va obtindre una precisió del 86,9 % usant la zona mitjana i 23 longituds d'ona. Els resultats obtinguts per la magrana van indicar que la imatge de color i hiperespectral posseïxen una precisió semblant a la predicció de les propietats fisicoquímiques usant PLS-R i la informació de la fruita intacta. No obstant això, quan es va usar la informació dels arils, la imatge hiperespectral va ser més precisa. Quant a la discriminació de l'estat de maduresa usant PLS-DA, la imatge hiperespectral va oferir major precisió (95,0 %) usant la informació de la fruita intacta i del 100 % usant la dels arils. Finalment, els resultats obtinguts pel nispro indiquen que la imatge hiperespectral juntament amb el mètode de classificació XGBOOST va poder discriminar entre mostres amb i sense defectes amb una precisió del 97,5 % i entre mostres sense defectes o amb defectes interns o externs amb una precisió del 96,7 %. A més, va ser possible distingir entre[EN] The objective of this doctoral thesis is to evaluate the potential of the hyperspectral imaging in the visible and near infrared range in combination with chemometrics for the assessment of the postharvest quality of fruit in a non-destructive, efficient and sustainable manner. To this end, different studies are presented in which the quality of some fruits is evaluated. Due to their economic, strategic or social value, the selected fruits are of special importance in the Valencian Community, such as Persimmon 'Rojo Brillante', the pomegranate 'Mollar de Elche', the loquat 'Algerie' or different nectarine cultivars. First, the quality monitoring of 'Big Top' and 'Magique' nectarines was carried out using reflectance and transmittance images. At the same time, transmittance was evaluated for the detection of split pit. In addition, a classification was performed to distinguish the 'Big Top' and 'Diamond Ray' cultivars, which look very similar but have different flavour. Whereas that for the 'Rojo Brillante' persimmon, the hyperspectral imaging was studied on the one hand to monitor its maturity, and on the other hand to evaluate the astringency of this fruit, which must be completely eliminated before its commercialization. The physicochemical properties of the 'Mollar de Elche' pomegranate were evaluated by means of hyperspectral and colour imaging during its maturity using the information from the intact fruit and arils. Finally, this technique was used to characterise and identify the internal and external defects of the 'Algerie' loquat. In the prediction of the IQI and RPI quality indexes using reflectance and transmittance images, R2 values around 0.90 were obtained and in the discrimination according to firmness, accuracy around 95.0 % using selected wavelengths was obtained. Regarding the split pit detection, the use of the hyperspectral image in transmittance mode obtained a 93.5 % of fruits with normal bone correctly classified and 100% with split pit using PLS-DA models and 7 wavelengths. The results obtained in the classification of 'Big Top' and 'Diamond Ray' fruits show accuracy higher than 96.0 % by using PLS-DA models and 14 selected wavelengths, higher than the obtained with colour image (56.9 %) and a trained panel (54.5 %). According to persimmon, the results obtained indicated that it is possible to distinguish between three states of maturity with an accuracy of 96.0 % using QDA models and its firmness was predicted obtaining a R2 value of 0.80 using PLS-R. Regarding astringency, two similar studies were carried out. In the first study, the fruit was classified according to the time of treatment with high concentrations of CO2 with a precision of around 95.0 % using QDA. In the second, the fruit was discriminated according to a threshold value of soluble tannins (0.04 %) and was determined what fruit area was better to perform this discrimination. Thus, an accuracy of 86.9 % was obtained using the middle area and 23 wavelengths. The results obtained for the pomegranate indicated that the use of colour and hyperspectral images have a similar precision in the prediction of physicochemical properties using PLS-R and the intact fruit information. However, when the information from the arils was used, the hyperspectral image was more accurate. Regarding the discrimination by the state of maturity using PLS-DA, the hyperspectral image offered greater precision, of 95.0 % using the information from the intact fruit and 100 % using that from the arils. Finally, the results obtained for the 'Algerie' loquat indicated that the hyperspectral image with the XGBOOST classification method could discriminate between sound samples and samples with defects with accuracy of 97.5 % and between sound samples or samples with internal or external defects with an accuracy of 96.7 %. It was also possible to distinguish between the different defects with an accuracy of 95.9 %.Munera Picazo, SM. (2019). Application of hyperspectral imaging combined with chemometrics for the non-destructive evaluation of the quality of fruit in postharvest [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/125954TESISCompendi

Remote Sensing as a Precision Farming Tool in the Nile Valley, Egypt

Detecting stress in plants resulting from different stressors including nitrogen deficiency, salinity, moisture, contamination and diseases, is crucial in crop production. In the Nile Valley, crop production is hindered perhaps more fundamentally by issues of water supply and salinity. Predicting stress in crops by conventional methods is tedious, laborious and costly and is perhaps unreliable in providing a spatial context of stress patterns. Accurate and quick monitoring techniques for crop status to detect stress in crops at early growth stages are needed to maximize crop productivity. In this context, remotely sensed data may provide a useful tool in precision farming. This research aims to evaluate the role of in situ hyperspectral and high spatial resolution satellite remote sensing data to detect stress in wheat and maize crops and assess whether moisture induced stress can be distinguished from salinity induced stress spectrally. A series of five greenhouse based experiments on wheat and maize were undertaken subjecting both crops to a range of salinity and moisture stress levels. Spectroradiometry measurements were collected at different growth stages of each crop to assess the relationship between crop biophysical and biochemical properties and reflectance measurements from plant canopies. Additionally, high spatial resolution satellite images including two QuickBird, one ASTER and two SPOT HRV were acquired in south-west Alexandria, Egypt to assess the potential of high spectral and spatial resolution satellite imagery to detect stress in wheat and maize at local and regional scales. Two field work visits were conducted in Egypt to collect ground reference data and coupled with Hyperion imagery acquisition, during winter and summer seasons of 2007 in March (8-30: wheat) and July (12-17: maize). Despite efforts, Hyperion imagery was not acquired due to factors out with the control of this research. Strong significant correlations between crop properties and different vegetation indices derived from both ground based and satellite platforms were observed. RDVI showed a sensitive index to different wheat properties (r > 0.90 with different biophysical properties). In maize, GNDVIbr and Cgreen had strong significant correlations with maize biophysical properties (r > 0.80). PCA showed the possibility to distinguish between moisture and salinity induced stress at the grain filling stages. The results further showed that a combined approach of high (2-5 m) and moderate (15-20) spatial resolution satellite imagery can provide a better mechanistic interpretation of the distribution and sources of stress, despite the typical small size of fields (20-50 m scale). QuickBird imagery successfully detects stress within field and local scales, whereas SPOT HRV imagery is useful in detecting stress at a regional scale, and therefore, can be a robust tool in identifying issues of crop management at a regional scale. Due to the limited spectral capabilities of high spatial resolution images, distinguishing different sources of stress is not directly possible, and therefore, hyperspectral satellite imagery (e.g. Hyperion or HyspIRI) is required to distinguish between moisture and salinity induced stress. It is evident from the results that remotely sensed data acquired by both in situ hyperspectral and high spatial resolution satellite remote sensing can be used as a useful tool in precision farming in the Nile Valley, Egypt. A combined approach of using reliable high spatial and spectral satellite remote sensing data could provide better insight about stress at local and regional scales. Using this technique as a precision farming and management tool will lead to improved crop productivity by limiting stress and consequently provide a valuable tool in combating issues of food supply at a time of rapid population growth

Visible and near-infrared spectroscopy and deep learning application for the qualitative and quantitative investigation of nitrogen status in cotton leaves

Leaf nitrogen concentration (LNC) is a critical indicator of crop nutrient status. In this study, the feasibility of using visible and near-infrared spectroscopy combined with deep learning to estimate LNC in cotton leaves was explored. The samples were collected from cotton’s whole growth cycle, and the spectra were from different measurement environments. The random frog (RF), weighted partial least squares regression (WPLS), and saliency map were used for characteristic wavelength selection. Qualitative models (partial least squares discriminant analysis (PLS-DA), support vector machine for classification (SVC), convolutional neural network classification (CNNC) and quantitative models (partial least squares regression (PLSR), support vector machine for regression (SVR), convolutional neural network regression (CNNR)) were established based on the full spectra and characteristic wavelengths. Satisfactory results were obtained by models based on CNN. The classification accuracy of leaves in three different LNC ranges was up to 83.34%, and the root mean square error of prediction (RMSEP) of quantitative prediction models of cotton leaves was as low as 3.36. In addition, the identification of cotton leaves based on the predicted LNC also achieved good results. These results indicated that the nitrogen content of cotton leaves could be effectively detected by deep learning and visible and near-infrared spectroscopy, which has great potential for real-world application