Evolving Spatio-temporal Data Machines Based on the NeuCube Neuromorphic Framework: Design Methodology and Selected Applications

The paper describes a new type of evolving connectionist systems (ECOS) called evolving spatio-temporal data machines based on neuromorphic, brain-like information processing principles (eSTDM). These are multi-modular computer systems designed to deal with large and fast spatio/spectro temporal data using spiking neural networks (SNN) as major processing modules. ECOS and eSTDM in particular can learn incrementally from data streams, can include ‘on the fly’ new input variables, new output class labels or regression outputs, can continuously adapt their structure and functionality, can be visualised and interpreted for new knowledge discovery and for a better understanding of the data and the processes that generated it. eSTDM can be used for early event prediction due to the ability of the SNN to spike early, before whole input vectors (they were trained on) are presented. A framework for building eSTDM called NeuCube along with a design methodology for building eSTDM using this are presented. The implementation of this framework in MATLAB, Java, and PyNN (Python) is presented. The latter facilitates the use of neuromorphic hardware platforms to run the eSTDM. Selected examples are given of eSTDM for pattern recognition and early event prediction on EEG data, fMRI data, multisensory seismic data, ecological data, climate data, audio-visual data. Future directions are discussed, including extension of the NeuCube framework for building neurogenetic eSTDM and also new applications of eSTDM

Classification of Spatio-Temporal fMRI Data in the Spiking Neural Network

Deep learning machine that employs Spiking Neural Network (SNN) is currently one of the main techniques in computational intelligence to discover knowledge from various fields.  It has been applied in many application areas include health, engineering, finances, environment, and others.  This paper addresses a classification problem based on a functional Magnetic Resonance Image (fMRI) brain data experiment involving a subject who reads a sentence or looks at a picture.   In the experiment, Signal to Noise Ratio (SNR) is used to select the most relevant features (voxels) before they were propagated in an SNN-based learning architecture.  The spatiotemporal relationships between Spatio Temporal Brain Data (STBD) are learned and classified accordingly. All the brain regions are taken from data with label star plus-04847-v7.mat. The overall results of this experiment show that the SNR method helps to get the most relevant features from the data to produced higher accuracy for Reading a Sentence instead of Looking a Picture.

Brain-Inspired Spatio-Temporal Associative Memories for Neuroimaging Data Classification: EEG and fMRI

Humans learn from a lot of information sources to make decisions. Once this information is learned in the brain, spatio-temporal associations are made, connecting all these sources (variables) in space and time represented as brain connectivity. In reality, to make a decision, we usually have only part of the information, either as a limited number of variables, limited time to make the decision, or both. The brain functions as a spatio-temporal associative memory. Inspired by the ability of the human brain, a brain-inspired spatio-temporal associative memory was proposed earlier that utilized the NeuCube brain-inspired spiking neural network framework. Here we applied the STAM framework to develop STAM for neuroimaging data, on the cases of EEG and fMRI, resulting in STAM-EEG and STAM-fMRI. This paper showed that once a NeuCube STAM classification model was trained on a complete spatio-temporal EEG or fMRI data, it could be recalled using only part of the time series, or/and only part of the used variables. We evaluated both temporal and spatial association and generalization accuracy accordingly. This was a pilot study that opens the field for the development of classification systems on other neuroimaging data, such as longitudinal MRI data, trained on complete data but recalled on partial data. Future research includes STAM that will work on data, collected across different settings, in different labs and clinics, that may vary in terms of the variables and time of data collection, along with other parameters. The proposed STAM will be further investigated for early diagnosis and prognosis of brain conditions and for diagnostic/prognostic marker discovery

Evolving, dynamic clustering of spatio/spectro-temporal data in 3D spiking neural network models and a case study on EEG data

Clustering is a fundamental data processing technique. While clustering of static (vector based) data and of fixed window size time series have been well explored, dynamic clustering of spatiotemporal data has been little researched if at all. Especially when patterns of changes (events) in the data across space and time have to be captured and understood. The paper presents novel methods for clustering of spatiotemporal data using the NeuCube spiking neural network (SNN) architecture. Clusters of spatiotemporal data were created and modified on-line in a continuous, incremental way, where spatiotemporal relationships of changes in variables are incrementally learned in a 3D SNN model and the model connectivity and spiking activity are incrementally clustered. Two clustering methods were proposed for SNN, one performed during unsupervised and one—during supervised learning models. Before submitted to the models, the data is encoded as spike trains, a spike representing a change in the variable value (an event). During the unsupervised learning, the cluster centres were predefined by the spatial locations of the input data variables in a 3D SNN model. Then clusters are evolving during the learning, i.e. they are adapted continuously over time reflecting the dynamics of the changes in the data. In the supervised learning, clusters represent the dynamic sequence of neuron spiking activities in a trained SNN model, specific for a particular class of data or for an individual instance. We illustrate the proposed clustering method on a real case study of spatiotemporal EEG data, recorded from three groups of subjects during a cognitive task. The clusters were referred back to the brain data for a better understanding of the data and the processes that generated it. The cluster analysis allowed to discover and understand differences on temporal sequences and spatial involvement of brain regions in response to a cognitive task

Review of medical data analysis based on spiking neural networks

Medical data mainly includes various types of biomedical signals and medical images, which can be used by professional doctors to make judgments on patients' health conditions. However, the interpretation of medical data requires a lot of human cost and there may be misjudgments, so many scholars use neural networks and deep learning to classify and study medical data, which can improve the efficiency and accuracy of doctors and detect diseases early for early diagnosis, etc. Therefore, it has a wide range of application prospects. However, traditional neural networks have disadvantages such as high energy consumption and high latency (slow computation speed). This paper presents recent research on signal classification and disease diagnosis based on a third-generation neural network, the spiking neuron network, using medical data including EEG signals, ECG signals, EMG signals and MRI images. The advantages and disadvantages of pulsed neural networks compared with traditional networks are summarized and its development orientation in the future is prospected

Spiking Neural Networks for Computational Intelligence:An Overview

Deep neural networks with rate-based neurons have exhibited tremendous progress in the last decade. However, the same level of progress has not been observed in research on spiking neural networks (SNN), despite their capability to handle temporal data, energy-efficiency and low latency. This could be because the benchmarking techniques for SNNs are based on the methods used for evaluating deep neural networks, which do not provide a clear evaluation of the capabilities of SNNs. Particularly, the benchmarking of SNN approaches with regards to energy efficiency and latency requires realization in suitable hardware, which imposes additional temporal and resource constraints upon ongoing projects. This review aims to provide an overview of the current real-world applications of SNNs and identifies steps to accelerate research involving SNNs in the future