Classification of ordered texture images using regression modelling and granulometric features

Structural information available from the granulometry of an image has been used widely in image texture analysis and classification. In this paper we present a method for classifying texture images which follow an intrinsic ordering of textures, using polynomial regression to express granulometric moments as a function of class label. Separate models are built for each individual moment and combined for back-prediction of the class label of a new image. The methodology was developed on synthetic images of evolving textures and tested using real images of 8 different grades of cut-tear-curl black tea leaves. For comparison, grey level co-occurrence (GLCM) based features were also computed, and both feature types were used in a range of classifiers including the regression approach. Experimental results demonstrate the superiority of the granulometric moments over GLCM-based features for classifying these tea images

Morphological granulometry for classification of evolving and ordered texture images.

In this work we investigate the use of morphological granulometric moments as texture descriptors to predict time or class of texture images which evolve over time or follow an intrinsic ordering of textures. A cubic polynomial regression was used to model each of several granulometric moments as a function of time or class. These models are then combined and used to predict time or class. The methodology was developed on synthetic images of evolving textures and then successfully applied to classify a sequence of corrosion images to a point on an evolution time scale. Classification performance of the new regression approach is compared to that of linear discriminant analysis, neural networks and support vector machines. We also apply our method to images of black tea leaves, which are ordered according to granule size, and very high classification accuracy was attained compared to existing published results for these images. It was also found that granulometric moments provide much improved classification compared to grey level co-occurrence features for shape-based texture images

Fundus image analysis for automatic screening of ophthalmic pathologies

En los ultimos años el número de casos de ceguera se ha reducido significativamente. A pesar de este hecho, la Organización Mundial de la Salud estima que un 80% de los casos de pérdida de visión (285 millones en 2010) pueden ser evitados si se diagnostican en sus estadios más tempranos y son tratados de forma efectiva. Para cumplir esta propuesta se pretende que los servicios de atención primaria incluyan un seguimiento oftalmológico de sus pacientes así como fomentar campañas de cribado en centros proclives a reunir personas de alto riesgo. Sin embargo, estas soluciones exigen una alta carga de trabajo de personal experto entrenado en el análisis de los patrones anómalos propios de cada enfermedad. Por lo tanto, el desarrollo de algoritmos para la creación de sistemas de cribado automáticos juga un papel vital en este campo. La presente tesis persigue la identificacion automática del daño retiniano provocado por dos de las patologías más comunes en la sociedad actual: la retinopatía diabética (RD) y la degenaración macular asociada a la edad (DMAE). Concretamente, el objetivo final de este trabajo es el desarrollo de métodos novedosos basados en la extracción de características de la imagen de fondo de ojo y clasificación para discernir entre tejido sano y patológico. Además, en este documento se proponen algoritmos de pre-procesado con el objetivo de normalizar la alta variabilidad existente en las bases de datos publicas de imagen de fondo de ojo y eliminar la contribución de ciertas estructuras retinianas que afectan negativamente en la detección del daño retiniano. A diferencia de la mayoría de los trabajos existentes en el estado del arte sobre detección de patologías en imagen de fondo de ojo, los métodos propuestos a lo largo de este manuscrito evitan la necesidad de segmentación de las lesiones o la generación de un mapa de candidatos antes de la fase de clasificación. En este trabajo, Local binary patterns, perfiles granulométricos y la dimensión fractal se aplican de manera local para extraer información de textura, morfología y tortuosidad de la imagen de fondo de ojo. Posteriormente, esta información se combina de diversos modos formando vectores de características con los que se entrenan avanzados métodos de clasificación formulados para discriminar de manera óptima entre exudados, microaneurismas, hemorragias y tejido sano. Mediante diversos experimentos, se valida la habilidad del sistema propuesto para identificar los signos más comunes de la RD y DMAE. Para ello se emplean bases de datos públicas con un alto grado de variabilidad sin exlcuir ninguna imagen. Además, la presente tesis también cubre aspectos básicos del paradigma de deep learning. Concretamente, se presenta un novedoso método basado en redes neuronales convolucionales (CNNs). La técnica de transferencia de conocimiento se aplica mediante el fine-tuning de las arquitecturas de CNNs más importantes en el estado del arte. La detección y localización de exudados mediante redes neuronales se lleva a cabo en los dos últimos experimentos de esta tesis doctoral. Cabe destacar que los resultados obtenidos mediante la extracción de características "manual" y posterior clasificación se comparan de forma objetiva con las predicciones obtenidas por el mejor modelo basado en CNNs. Los prometedores resultados obtenidos en esta tesis y el bajo coste y portabilidad de las cámaras de adquisión de imagen de retina podrían facilitar la incorporación de los algoritmos desarrollados en este trabajo en un sistema de cribado automático que ayude a los especialistas en la detección de patrones anomálos característicos de las dos enfermedades bajo estudio: RD y DMAE.In last years, the number of blindness cases has been significantly reduced. Despite this promising news, the World Health Organisation estimates that 80% of visual impairment (285 million cases in 2010) could be avoided if diagnosed and treated early. To accomplish this purpose, eye care services need to be established in primary health and screening campaigns should be a common task in centres with people at risk. However, these solutions entail a high workload for trained experts in the analysis of the anomalous patterns of each eye disease. Therefore, the development of algorithms for automatic screening system plays a vital role in this field. This thesis focuses on the automatic identification of the retinal damage provoked by two of the most common pathologies in the current society: diabetic retinopathy (DR) and age-related macular degeneration (AMD). Specifically, the final goal of this work is to develop novel methods, based on fundus image description and classification, to characterise the healthy and abnormal tissue in the retina background. In addition, pre-processing algorithms are proposed with the aim of normalising the high variability of fundus images and removing the contribution of some retinal structures that could hinder in the retinal damage detection. In contrast to the most of the state-of-the-art works in damage detection using fundus images, the methods proposed throughout this manuscript avoid the necessity of lesion segmentation or the candidate map generation before the classification stage. Local binary patterns, granulometric profiles and fractal dimension are locally computed to extract texture, morphological and roughness information from retinal images. Different combinations of this information feed advanced classification algorithms formulated to optimally discriminate exudates, microaneurysms, haemorrhages and healthy tissues. Through several experiments, the ability of the proposed system to identify DR and AMD signs is validated using different public databases with a large degree of variability and without image exclusion. Moreover, this thesis covers the basics of the deep learning paradigm. In particular, a novel approach based on convolutional neural networks is explored. The transfer learning technique is applied to fine-tune the most important state-of-the-art CNN architectures. Exudate detection and localisation tasks using neural networks are carried out in the last two experiments of this thesis. An objective comparison between the hand-crafted feature extraction and classification process and the prediction models based on CNNs is established. The promising results of this PhD thesis and the affordable cost and portability of retinal cameras could facilitate the further incorporation of the developed algorithms in a computer-aided diagnosis (CAD) system to help specialists in the accurate detection of anomalous patterns characteristic of the two diseases under study: DR and AMD.En els últims anys el nombre de casos de ceguera s'ha reduït significativament. A pesar d'este fet, l'Organització Mundial de la Salut estima que un 80% dels casos de pèrdua de visió (285 milions en 2010) poden ser evitats si es diagnostiquen en els seus estadis més primerencs i són tractats de forma efectiva. Per a complir esta proposta es pretén que els servicis d'atenció primària incloguen un seguiment oftalmològic dels seus pacients així com fomentar campanyes de garbellament en centres regentats per persones d'alt risc. No obstant això, estes solucions exigixen una alta càrrega de treball de personal expert entrenat en l'anàlisi dels patrons anòmals propis de cada malaltia. Per tant, el desenrotllament d'algoritmes per a la creació de sistemes de garbellament automàtics juga un paper vital en este camp. La present tesi perseguix la identificació automàtica del dany retiniano provocat per dos de les patologies més comunes en la societat actual: la retinopatia diabètica (RD) i la degenaración macular associada a l'edat (DMAE) . Concretament, l'objectiu final d'este treball és el desenrotllament de mètodes novedodos basats en l'extracció de característiques de la imatge de fons d'ull i classificació per a discernir entre teixit sa i patològic. A més, en este document es proposen algoritmes de pre- processat amb l'objectiu de normalitzar l'alta variabilitat existent en les bases de dades publiques d'imatge de fons d'ull i eliminar la contribució de certes estructures retinianas que afecten negativament en la detecció del dany retiniano. A diferència de la majoria dels treballs existents en l'estat de l'art sobre detecció de patologies en imatge de fons d'ull, els mètodes proposats al llarg d'este manuscrit eviten la necessitat de segmentació de les lesions o la generació d'un mapa de candidats abans de la fase de classificació. En este treball, Local binary patterns, perfils granulometrics i la dimensió fractal s'apliquen de manera local per a extraure informació de textura, morfologia i tortuositat de la imatge de fons d'ull. Posteriorment, esta informació es combina de diversos modes formant vectors de característiques amb els que s'entrenen avançats mètodes de classificació formulats per a discriminar de manera òptima entre exsudats, microaneurismes, hemorràgies i teixit sa. Per mitjà de diversos experiments, es valida l'habilitat del sistema proposat per a identificar els signes més comuns de la RD i DMAE. Per a això s'empren bases de dades públiques amb un alt grau de variabilitat sense exlcuir cap imatge. A més, la present tesi també cobrix aspectes bàsics del paradigma de deep learning. Concretament, es presenta un nou mètode basat en xarxes neuronals convolucionales (CNNs) . La tècnica de transferencia de coneixement s'aplica per mitjà del fine-tuning de les arquitectures de CNNs més importants en l'estat de l'art. La detecció i localització d'exudats per mitjà de xarxes neuronals es du a terme en els dos últims experiments d'esta tesi doctoral. Cal destacar que els resultats obtinguts per mitjà de l'extracció de característiques "manual" i posterior classificació es comparen de forma objectiva amb les prediccions obtingudes pel millor model basat en CNNs. Els prometedors resultats obtinguts en esta tesi i el baix cost i portabilitat de les cambres d'adquisión d'imatge de retina podrien facilitar la incorporació dels algoritmes desenrotllats en este treball en un sistema de garbellament automàtic que ajude als especialistes en la detecció de patrons anomálos característics de les dos malalties baix estudi: RD i DMAE.Colomer Granero, A. (2018). Fundus image analysis for automatic screening of ophthalmic pathologies [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/99745TESI

A review on automatic mammographic density and parenchymal segmentation

Breast cancer is the most frequently diagnosed cancer in women. However, the exact cause(s) of breast cancer still remains unknown. Early detection, precise identification of women at risk, and application of appropriate disease prevention measures are by far the most effective way to tackle breast cancer. There are more than 70 common genetic susceptibility factors included in the current non-image-based risk prediction models (e.g., the Gail and the Tyrer-Cuzick models). Image-based risk factors, such as mammographic densities and parenchymal patterns, have been established as biomarkers but have not been fully incorporated in the risk prediction models used for risk stratification in screening and/or measuring responsiveness to preventive approaches. Within computer aided mammography, automatic mammographic tissue segmentation methods have been developed for estimation of breast tissue composition to facilitate mammographic risk assessment. This paper presents a comprehensive review of automatic mammographic tissue segmentation methodologies developed over the past two decades and the evidence for risk assessment/density classification using segmentation. The aim of this review is to analyse how engineering advances have progressed and the impact automatic mammographic tissue segmentation has in a clinical environment, as well as to understand the current research gaps with respect to the incorporation of image-based risk factors in non-image-based risk prediction models

The geomorphology of coarse clastic surfaces in arid environments

This study explores the linkages between slope form and slope process in arid environments. In doing so, questions of the development of slopes in arid environments are examined. The age of many arid environment surfaces, combined with the sporadic nature of formative events, means that long-term surface and slope development remains an elusive question in geomorphology. Deserts have inspired many of the most enduring theories of landscape evolution and continue to provide a test-bed for new and emerging ideas in geomorphology. The clast-mantled surface of the northeast Jordan Badia presents an ideal opportunity to study the links between surface character and slope processes in arid environments. The northeast Badia also provides an opportunity to explore theories of slope development and the behaviour of earth surface systems. The nature of the clast covered ground surface has been assessed using a new digital aerial photography and image analysis technique. A field study of surface processes has been used to explore links between surface form and slope process. Additionally, a computer based simulation of long-term modification of the spatial distribution of surface clast has been undertaken. Given the subtle variation in earth surface form between disparate locations, a new semi-quantitative method of locating sample sites has been developed. The characterization of surface form has identified statistically significant relationships between ground surface character and two-dimensional slope form. Systematic variations in ground surface configuration, both within and between basalt flows, are found to be indicative of the action of slope processes. The first study of ground surface hydrology in the north eastern Badia has been undertaken. The results from a series of rain-storm simulation experiments show subtle but significant links between the action of surface processes and variations in ground surface form. The controls on surface process are diverse and vary in significance with position in the landscape. A combination of ground surface characterization and process studies has identified several interesting geomorphological phenomena The surfaces exhibit systematic variations in structure and organization. Homeostatic links between form and process are clearly apparent, which suggests that surface form influences and is influenced by process action via a process of positive feedbacks. Given the sporadic and infrequent recurrence of formative events in arid environments, a modelling approach has been developed to understand the long-term, spatial dynamics of the ground surface. The model has been used to simulate structure in the surface clast arrangement and the sensitivity of surface organization to physically constrained variations in model parameters. The model also allows the surfaces to be considered as self-organizing earth surface systems. The model results provide new insights into the process-form linkages in operation on clast-mantled arid surfaces. The model results provide new ways of examining and understanding the dynamics of clast mantled arid surfaces and have implications for the application of self-organization in geomorphology

TWINLATIN: Twinning European and Latin-American river basins for research enabling sustainable water resources management. Combined Report D3.1 Hydrological modelling report and D3.2 Evaluation report

Water use has almost tripled over the past 50 years and in some regions the water demand already exceeds supply (Vorosmarty et al., 2000). The world is facing a “global water crisis”; in many countries, current levels of water use are unsustainable, with systems vulnerable to collapse from even small changes in water availability. The need for a scientifically-based assessment of the potential impacts on water resources of future changes, as a basis for society to adapt to such changes, is strong for most parts of the world. Although the focus of such assessments has tended to be climate change, socio-economic changes can have as significant an impact on water availability across the four main use sectors i.e. domestic, agricultural, industrial (including energy) and environmental. Withdrawal and consumption of water is expected to continue to grow substantially over the next 20-50 years (Cosgrove & Rijsberman, 2002), and consequent changes in availability may drastically affect society and economies. One of the most needed improvements in Latin American river basin management is a higher level of detail in hydrological modelling and erosion risk assessment, as a basis for identification and analysis of mitigation actions, as well as for analysis of global change scenarios. Flow measurements are too costly to be realised at more than a few locations, which means that modelled data are required for the rest of the basin. Hence, TWINLATIN Work Package 3 “Hydrological modelling and extremes” was formulated to provide methods and tools to be used by other WPs, in particular WP6 on “Pollution pressure and impact analysis” and WP8 on “Change effects and vulnerability assessment”. With an emphasis on high and low flows and their impacts, WP3 was originally called “Hydrological modelling, flooding, erosion, water scarcity and water abstraction”. However, at the TWINLATIN kick-off meeting it was agreed that some of these issues resided more appropriately in WP6 and WP8, and so WP3 was renamed to focus on hydrological modelling and hydrological extremes. The specific objectives of WP3 as set out in the Description of Work are

Handbook of Mathematical Geosciences

This Open Access handbook published at the IAMG's 50th anniversary, presents a compilation of invited path-breaking research contributions by award-winning geoscientists who have been instrumental in shaping the IAMG. It contains 45 chapters that are categorized broadly into five parts (i) theory, (ii) general applications, (iii) exploration and resource estimation, (iv) reviews, and (v) reminiscences covering related topics like mathematical geosciences, mathematical morphology, geostatistics, fractals and multifractals, spatial statistics, multipoint geostatistics, compositional data analysis, informatics, geocomputation, numerical methods, and chaos theory in the geosciences