NLP Driven Models for Automatically Generating Survey Articles for Scientific Topics.

This thesis presents new methods that use natural language processing (NLP) driven models for summarizing research in scientific fields. Given a topic query in the form of a text string, we present methods for finding research articles relevant to the topic as well as summarization algorithms that use lexical and discourse information present in the text of these articles to generate coherent and readable extractive summaries of past research on the topic. In addition to summarizing prior research, good survey articles should also forecast future trends. With this motivation, we present work on forecasting future impact of scientific publications using NLP driven features.PhDComputer Science and EngineeringUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttp://deepblue.lib.umich.edu/bitstream/2027.42/113407/1/rahuljha_1.pd

CiteFinder: a System to Find and Rank Medical Citations

This thesis presents CiteFinder, a system to find relevant citations for clinicians\u27 written content. Inclusion of citations for clinical information content makes the content more reliable through the provision of scientific articles as references, and enables clinicians to easily update their written content using new information. The proposed approach splits the content into sentences, identifies the sentences that need to be supported with citations by applying classification algorithms, and uses information retrieval and ranking techniques to extract and rank relevant citations from MEDLINE for any given sentence. Additionally, this system extracts snippets from the retrieved articles. We assessed our approach on 3,699 MEDLINE papers on the subject of Heart Failure . We implemented multi-level and weight ranking algorithms to rank the citations. This study shows that using Journal priority and Study Design type significantly improves results obtained with the traditional approach of only using the text of articles, by approximately 63%. We also show that using the full-text, rather than just the abstract text, leads to extraction of higher quality snippets

Argumentative zoning information extraction from scientific text

Let me tell you, writing a thesis is not always a barrel of laughs—and strange things can happen, too. For example, at the height of my thesis paranoia, I had a re-current dream in which my cat Amy gave me detailed advice on how to restructure the thesis chapters, which was awfully nice of her. But I also had a lot of human help throughout this time, whether things were going fine or beserk. Most of all, I want to thank Marc Moens: I could not have had a better or more knowledgable supervisor. He always took time for me, however busy he might have been, reading chapters thoroughly in two days. He both had the calmness of mind to give me lots of freedom in research, and the right judgement to guide me away, tactfully but determinedly, from the occasional catastrophe or other waiting along the way. He was great fun to work with and also became a good friend. My work has profitted from the interdisciplinary, interactive and enlightened atmosphere at the Human Communication Centre and the Centre for Cognitive Science (which is now called something else). The Language Technology Group was a great place to work in, as my research was grounded in practical applications develope

A semantic metadata enrichment software ecosystem (SMESE) : its prototypes for digital libraries, metadata enrichments and assisted literature reviews

Contribution 1: Initial design of a semantic metadata enrichment ecosystem (SMESE) for Digital Libraries The Semantic Metadata Enrichments Software Ecosystem (SMESE V1) for Digital Libraries (DLs) proposed in this paper implements a Software Product Line Engineering (SPLE) process using a metadata-based software architecture approach. It integrates a components-based ecosystem, including metadata harvesting, text and data mining and machine learning models. SMESE V1 is based on a generic model for standardizing meta-entity metadata and a mapping ontology to support the harvesting of various types of documents and their metadata from the web, databases and linked open data. SMESE V1 supports a dynamic metadata-based configuration model using multiple thesauri. The proposed model defines rules-based crosswalks that create pathways to different sources of data and metadata. Each pathway checks the metadata source structure and performs data and metadata harvesting. SMESE V1 proposes a metadata model in six categories of metadata instead of the four currently proposed in the literature for DLs; this makes it possible to describe content by defined entity, thus increasing usability. In addition, to tackle the issue of varying degrees of depth, the proposed metadata model describes the most elementary aspects of a harvested entity. A mapping ontology model has been prototyped in SMESE V1 to identify specific text segments based on thesauri in order to enrich content metadata with topics and emotions; this mapping ontology also allows interoperability between existing metadata models. Contribution 2: Metadata enrichments ecosystem based on topics and interests The second contribution extends the original SMESE V1 proposed in Contribution 1. Contribution 2 proposes a set of topic- and interest-based content semantic enrichments. The improved prototype, SMESE V3 (see following figure), uses text analysis approaches for sentiment and emotion detection and provides machine learning models to create a semantically enriched repository, thus enabling topic- and interest-based search and discovery. SMESE V3 has been designed to find short descriptions in terms of topics, sentiments and emotions. It allows efficient processing of large collections while keeping the semantic and statistical relationships that are useful for tasks such as: 1. topic detection, 2. contents classification, 3. novelty detection, 4. text summarization, 5. similarity detection. Contribution 3: Metadata-based scientific assisted literature review The third contribution proposes an assisted literature review (ALR) prototype, STELLAR V1 (Semantic Topics Ecosystem Learning-based Literature Assisted Review), based on machine learning models and a semantic metadata ecosystem. Its purpose is to identify, rank and recommend relevant papers for a literature review (LR). This third prototype can assist researchers, in an iterative process, in finding, evaluating and annotating relevant papers harvested from different sources and input into the SMESE V3 platform, available at any time. The key elements and concepts of this prototype are: 1. text and data mining, 2. machine learning models, 3. classification models, 4. researchers annotations, 5. semantically enriched metadata. STELLAR V1 helps the researcher to build a list of relevant papers according to a selection of metadata related to the subject of the ALR. The following figure presents the model, the related machine learning models and the metadata ecosystem used to assist the researcher in the task of producing an ALR on a specific topic

A decade of in-text citation analysis based on natural language processing and machine learning techniques: an overview of empirical studies

In-text citation analysis is one of the most frequently used methods in research evaluation. We are seeing significant growth in citation analysis through bibliometric metadata, primarily due to the availability of citation databases such as the Web of Science, Scopus, Google Scholar, Microsoft Academic, and Dimensions. Due to better access to full-text publication corpora in recent years, information scientists have gone far beyond traditional bibliometrics by tapping into advancements in full-text data processing techniques to measure the impact of scientific publications in contextual terms. This has led to technical developments in citation classifications, citation sentiment analysis, citation summarisation, and citation-based recommendation. This article aims to narratively review the studies on these developments. Its primary focus is on publications that have used natural language processing and machine learning techniques to analyse citations