Integrating Scale Out and Fault Tolerance in Stream Processing using Operator State Management

As users of big data applications expect fresh results, we witness a new breed of stream processing systems (SPS) that are designed to scale to large numbers of cloud-hosted machines. Such systems face new challenges: (i) to benefit from the pay-as-you-go model of cloud computing, they must scale out on demand, acquiring additional virtual machines (VMs) and parallelising operators when the workload increases; (ii) failures are common with deployments on hundreds of VMs - systems must be fault-tolerant with fast recovery times, yet low per-machine overheads. An open question is how to achieve these two goals when stream queries include stateful operators, which must be scaled out and recovered without affecting query results. Our key idea is to expose internal operator state explicitly to the SPS through a set of state management primitives. Based on them, we describe an integrated approach for dynamic scale out and recovery of stateful operators. Externalised operator state is checkpointed periodically by the SPS and backed up to upstream VMs. The SPS identifies individual operator bottlenecks and automatically scales them out by allocating new VMs and partitioning the check-pointed state. At any point, failed operators are recovered by restoring checkpointed state on a new VM and replaying unprocessed tuples. We evaluate this approach with the Linear Road Benchmark on the Amazon EC2 cloud platform and show that it can scale automatically to a load factor of L=350 with 50 VMs, while recovering quickly from failures. Copyright © 2013 ACM

A Bag-of-Tasks Scheduler Tolerant to Temporal Failures in Clouds

Cloud platforms have emerged as a prominent environment to execute high performance computing (HPC) applications providing on-demand resources as well as scalability. They usually offer different classes of Virtual Machines (VMs) which ensure different guarantees in terms of availability and volatility, provisioning the same resource through multiple pricing models. For instance, in Amazon EC2 cloud, the user pays per hour for on-demand VMs while spot VMs are unused instances available for lower price. Despite the monetary advantages, a spot VM can be terminated, stopped, or hibernated by EC2 at any moment. Using both hibernation-prone spot VMs (for cost sake) and on-demand VMs, we propose in this paper a static scheduling for HPC applications which are composed by independent tasks (bag-of-task) with deadline constraints. However, if a spot VM hibernates and it does not resume within a time which guarantees the application's deadline, a temporal failure takes place. Our scheduling, thus, aims at minimizing monetary costs of bag-of-tasks applications in EC2 cloud, respecting its deadline and avoiding temporal failures. To this end, our algorithm statically creates two scheduling maps: (i) the first one contains, for each task, its starting time and on which VM (i.e., an available spot or on-demand VM with the current lowest price) the task should execute; (ii) the second one contains, for each task allocated on a VM spot in the first map, its starting time and on which on-demand VM it should be executed to meet the application deadline in order to avoid temporal failures. The latter will be used whenever the hibernation period of a spot VM exceeds a time limit. Performance results from simulation with task execution traces, configuration of Amazon EC2 VM classes, and VMs market history confirms the effectiveness of our scheduling and that it tolerates temporal failures

Aging-induced stem cell mutations as drivers for disease and cancer

Aging is characterized by a decrease in genome integrity, impaired organ maintenance, and an increased risk of cancer, which coincide with clonal dominance of expanded mutant stem and progenitor cell populations in aging tissues, such as the intestinal epithelium, the hematopoietic system, and the male germline. Here we discuss possible explanations for age-associated increases in the initiation and/or progression of mutant stem/progenitor clones and highlight the roles of stem cell quiescence, replication-associated DNA damage, telomere shortening, epigenetic alterations, and metabolic challenges as determinants of stem cell mutations and clonal dominance in aging

Fault Tolerant Adaptive Parallel and Distributed Simulation through Functional Replication

This paper presents FT-GAIA, a software-based fault-tolerant parallel and distributed simulation middleware. FT-GAIA has being designed to reliably handle Parallel And Distributed Simulation (PADS) models, which are needed to properly simulate and analyze complex systems arising in any kind of scientific or engineering field. PADS takes advantage of multiple execution units run in multicore processors, cluster of workstations or HPC systems. However, large computing systems, such as HPC systems that include hundreds of thousands of computing nodes, have to handle frequent failures of some components. To cope with this issue, FT-GAIA transparently replicates simulation entities and distributes them on multiple execution nodes. This allows the simulation to tolerate crash-failures of computing nodes. Moreover, FT-GAIA offers some protection against Byzantine failures, since interaction messages among the simulated entities are replicated as well, so that the receiving entity can identify and discard corrupted messages. Results from an analytical model and from an experimental evaluation show that FT-GAIA provides a high degree of fault tolerance, at the cost of a moderate increase in the computational load of the execution units.Comment: arXiv admin note: substantial text overlap with arXiv:1606.0731

Resource-Efficient Replication and Migration of Virtual Machines.

Continuous replication and live migration of Virtual Machines (VMs) are two vital tools in a virtualized environment, but they are resource-expensive. Continuously replicating a VM's checkpointed state to a backup host maintains high-availability (HA) of the VM despite host failures, but checkpoint replication can generate significant network traffic. Each replicated VM also incurs a 100% memory overhead, since the backup unproductively reserves the same amount of memory to hold the redundant VM state. Live migration, though being widely used for load-balancing, power-saving, etc., can also generate excessive network traffic, by transferring VM state iteratively. In addition, it can incur a long completion time and degrade application performance. This thesis explores ways to replicate VMs for HA using resources efficiently, and to migrate VMs fast, with minimal execution disruption and using resources efficiently. First, we investigate the tradeoffs in using different compression methods to reduce the network traffic of checkpoint replication in a HA system. We evaluate gzip, delta and similarity compressions based on metrics that are specifically important in a HA system, and then suggest guidelines for their selection. Next, we propose HydraVM, a storage-based HA approach that eliminates the unproductive memory reservation made in backup hosts. HydraVM maintains a recent image of a protected VM in a shared storage by taking and consolidating incremental VM checkpoints. When a failure occurs, HydraVM quickly resumes the execution of a failed VM by loading a small amount of essential VM state from the storage. As the VM executes, the VM state not yet loaded is supplied on-demand. Finally, we propose application-assisted live migration, which skips transfer of VM memory that need not be migrated to execute running applications at the destination. We develop a generic framework for the proposed approach, and then use the framework to build JAVMM, a system that migrates VMs running Java applications skipping transfer of garbage in Java memory. Our evaluation results show that compared to Xen live migration, which is agnostic of running applications, JAVMM can reduce the completion time, network traffic and application downtime caused by Java VM migration, all by up to over 90%.PhDComputer Science and EngineeringUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttp://deepblue.lib.umich.edu/bitstream/2027.42/111575/1/karenhou_1.pd

3D MODELING of A COMPLEX BUILDING: From MULTI-VIEW IMAGE FUSION to GOOGLE EARTH PUBLICATION

This paper presents a pipeline that aims at illustrating the procedure to realize a 3D model of a complex building integrating the UAV and terrestrial images and modifying the 3D model in order to publish to Google Earth in an interactive modality so as to provide better available models for visualization and use. The main steps of the procedure are the optimization of the UAV flight, the integration of the different UAV and ground floor images and the optimization of the model to be published to GE. The case study has been identified in a building, The Eremo di Santa Rosalia Convent in Sicily which hash more staggered elevations and located in the hills of the hinterland and of which, the online platform only indicate the position on Google Maps (GM) and Google Earth (GE) with a photo from above and a non-urban road whose GM path is not corresponding with the GE photo. The process highlights the integration of the models and showcases a workflow for the publication of the combined 3D model to the GE platform