High-Throughput System for the Early Quantification of Major Architectural Traits in Olive Breeding Trials Using UAV Images and OBIA Techniques

The need for the olive farm modernization have encouraged the research of more efficient crop management strategies through cross-breeding programs to release new olive cultivars more suitable for mechanization and use in intensive orchards, with high quality production and resistance to biotic and abiotic stresses. The advancement of breeding programs are hampered by the lack of efficient phenotyping methods to quickly and accurately acquire crop traits such as morphological attributes (tree vigor and vegetative growth habits), which are key to identify desirable genotypes as early as possible. In this context, an UAV-based high-throughput system for olive breeding program applications was developed to extract tree traits in large-scale phenotyping studies under field conditions. The system consisted of UAV-flight configurations, in terms of flight altitude and image overlaps, and a novel, automatic, and accurate object-based image analysis (OBIA) algorithm based on point clouds, which was evaluated in two experimental trials in the framework of a table olive breeding program, with the aim to determine the earliest date for suitable quantifying of tree architectural traits. Two training systems (intensive and hedgerow) were evaluated at two very early stages of tree growth: 15 and 27 months after planting. Digital Terrain Models (DTMs) were automatically and accurately generated by the algorithm as well as every olive tree identified, independently of the training system and tree age. The architectural traits, specially tree height and crown area, were estimated with high accuracy in the second flight campaign, i.e. 27 months after planting. Differences in the quality of 3D crown reconstruction were found for the growth patterns derived from each training system. These key phenotyping traits could be used in several olive breeding programs, as well as to address some agronomical goals. In addition, this system is cost and time optimized, so that requested architectural traits could be provided in the same day as UAV flights. This high-throughput system may solve the actual bottleneck of plant phenotyping of "linking genotype and phenotype," considered a major challenge for crop research in the 21st century, and bring forward the crucial time of decision making for breeders

How organized is deep convection over Germany?

Deep moist convection shows a tendency to organize into mesoscale structures. To be able to understand the potential effect of convective organization on the climate, one needs first to characterize organization. In this study, we systematically characterize the organizational state of convection over Germany based on two years of cloud-top observations derived from the Meteosat Second Generation satellite and of precipitation cores detected by the German C-band radar network. The organizational state of convection is characterized by commonly employed organization indices, which are mostly based on the object numbers, sizes and nearest-neighbour distances. According to the organization index Iorg, cloud tops and precipitation cores are found to be in an organized state for 69% and 92% of the time, respectively. There is an increase in rainfall when the number of objects and their sizes increase, independently of the organizational state. Case-studies of specific days suggest that convectively organized states correspond to either local multi-cell clusters, with less numerous, larger objects close to each other, or to scattered clusters, with more numerous, smaller organized objects spread out over the domain. For those days, simulations are performed with the large-eddy model ICON with grid spacings of 625, 312 and 156?m. Although the model underestimates rainfall and shows a too large cold cloud coverage, the organizational state is reasonably well represented without significant differences between the grid spacings

An Automated Method for Tracking Clouds in Planetary Atmospheres

We present an automated method for cloud tracking which can be applied to planetary images. The method is based on a digital correlator which compares two or more consecutive images and identifies patterns by maximizing correlations between image blocks. This approach bypasses the problem of feature detection. Four variations of the algorithm are tested on real cloud images of Jupiter’s white ovals from the Galileo mission, previously analyzed in Vasavada et al. [Vasavada, A.R., Ingersoll, A.P., Banfield, D., Bell, M., Gierasch, P.J., Belton, M.J.S., Orton, G.S., Klaasen, K.P., Dejong, E., Breneman, H.H., Jones, T.J., Kaufman, J.M., Magee, K.P., Senske, D.A. 1998. Galileo imaging of Jupiter’s atmosphere: the great red spot, equatorial region, and white ovals. Icarus, 135, 265, doi:10.1006/icar.1998.5984]. Direct correlation, using the sum of squared differences between image radiances as a distance estimator (baseline case), yields displacement vectors very similar to this previous analysis. Combining this distance estimator with the method of order ranks results in a technique which is more robust in the presence of outliers and noise and of better quality. Finally, we introduce a distance metric which, combined with order ranks, provides results of similar quality to the baseline case and is faster. The new approach can be applied to data from a number of space-based imaging instruments with a non-negligible gain in computing time

Automated Classification of Airborne Laser Scanning Point Clouds

Making sense of the physical world has always been at the core of mapping. Up until recently, this has always dependent on using the human eye. Using airborne lasers, it has become possible to quickly "see" more of the world in many more dimensions. The resulting enormous point clouds serve as data sources for applications far beyond the original mapping purposes ranging from flooding protection and forestry to threat mitigation. In order to process these large quantities of data, novel methods are required. In this contribution, we develop models to automatically classify ground cover and soil types. Using the logic of machine learning, we critically review the advantages of supervised and unsupervised methods. Focusing on decision trees, we improve accuracy by including beam vector components and using a genetic algorithm. We find that our approach delivers consistently high quality classifications, surpassing classical methods