Applications of ordered weights in information transmission

This dissertation is devoted to a study of a class of linear codes related to a particular metric space that generalizes the Hamming space in that the metric function is defined by a partial order on the set of coordinates of the vector. We begin with developing combinatorial and linear-algebraic aspects of linear ordered codes. In particular, we define multivariate rank enumerators for linear codes and show that they form a natural set of invariants in the study of the duality of linear codes. The rank enumerators are further shown to be connected to the shape distributions of linear codes, and enable us to give a simple proof of a MacWilliams-like theorem for the ordered case. We also pursue the connection between linear codes and matroids in the ordered case and show that the rank enumerator can be thought of as an instance of the classical matroid invariant called the Tutte polynomial. Finally, we consider the distributions of support weights of ordered codes and their expression via the rank enumerator. Altogether, these results generalize a group of well-known results for codes in the Hamming space to the ordered case. Extending the research in the first part, we define simple probabilistic channel models that are in a certain sense matched to the ordered distance, and prove several results related to performance of linear codes on such channels. In particular, we define ordered wire-tap channels and establish several results related to the use of linear codes for reliable and secure transmission in such channel models. In the third part of this dissertation we study polar coding schemes for channels with nonbinary input alphabets. We construct a family of linear codes that achieve the capacity of a nonbinary symmetric discrete memoryless channel with input alphabet of size q=2^r, r=2,3,.... A new feature of the coding scheme that arises in the nonbinary case is related to the emergence of several extremal configurations for the polarized data symbols. We establish monotonicity properties of the configurations and use them to show that total transmission rate approaches the symmetric capacity of the channel. We develop these results to include the case of ``controlled polarization'' under which the data symbols polarize to any predefined set of extremal configurations. We also outline an application of this construction to data encoding in video sequences of the MPEG-2 and H.264/MPEG-4 standards

Coding mechanisms for communication and compression : analysis of wireless channels and DNA sequencing

textThis thesis comprises of two related but distinct components: Coding arguments for communication channels and information-theoretic analysis for haplotype assembly. The common thread for both problems is utilizing information and coding theoretic principles in understanding their underlying mechanisms. For the first class of problems, I study two practical challenges that prevent optimal discrete codes utilizing in real communication and compression systems, namely, coding over analog alphabet and fading. In particular, I use an expansion coding scheme to convert the original analog channel coding and source coding problems into a set of independent discrete subproblems. By adopting optimal discrete codes over the expanded levels, this low-complexity coding scheme can approach Shannon limit perfectly or in ratio. Meanwhile, I design a polar coding scheme to deal with the unstable state of fading channels. This novel coding mechanism of hierarchically utilizing different types of polar codes has been proved to be ergodic capacity achievable for several fading systems, without channel state information known at the transmitter. For the second class of problems, I build an information-theoretic view for haplotype assembly. More precisely, the recovery of the target pair of haplotype sequences using short reads is rephrased as the joint source-channel coding problem. Two binary messages, representing haplotypes and chromosome memberships of reads, are encoded and transmitted over a channel with erasures and errors, where the channel model reflects salient features of highthroughput sequencing. The focus is on determining the required number of reads for reliable haplotype reconstruction.Electrical and Computer Engineerin

Approximate quantum error correction for generalized amplitude damping errors

We present analytic estimates of the performances of various approximate quantum error correction schemes for the generalized amplitude damping (GAD) qubit channel. Specifically, we consider both stabilizer and nonadditive quantum codes. The performance of such error-correcting schemes is quantified by means of the entanglement fidelity as a function of the damping probability and the non-zero environmental temperature. The recovery scheme employed throughout our work applies, in principle, to arbitrary quantum codes and is the analogue of the perfect Knill-Laflamme recovery scheme adapted to the approximate quantum error correction framework for the GAD error model. We also analytically recover and/or clarify some previously known numerical results in the limiting case of vanishing temperature of the environment, the well-known traditional amplitude damping channel. In addition, our study suggests that degenerate stabilizer codes and self-complementary nonadditive codes are especially suitable for the error correction of the GAD noise model. Finally, comparing the properly normalized entanglement fidelities of the best performant stabilizer and nonadditive codes characterized by the same length, we show that nonadditive codes outperform stabilizer codes not only in terms of encoded dimension but also in terms of entanglement fidelity.Comment: 44 pages, 8 figures, improved v