The Late Natufian at Raqefet Cave: The 2006 Excavation Season

A long season of excavation took place at Raqefet cave during the summer of 2006. In the first chamber we exposed an area rich with Natufian human burials (Locus 1), a large bedrock basin with a burial and two boulder mortars (Locus 2), an in situ Natufian layer (Locus 3), and two areas with rich cemented sediments (tufa) covering the cave floor (Loci 4, 5). The latter indicate that at the time of occupation the Natufian layers covered the entire floor of the first chamber. During the ensuing millennia, these were washed away and/or removed by later visitors to the cave. We found in the cave and the terrace almost 80 human-made bedrock holes (most of which are commonly but somewhat erroneously termed mortars and cupmarks). Several contained in situ Natufian remains, and at the top of one a human skeleton was unearthed. The variety of the HBHs, in terms of shape and dimensions indicates that they were used in many ways, some of which could not have been for food or mineral processing. The paper provides results of on-going studies regarding the burials, the HBHs, the flint assemblage, the faunal remains, the ground stone industry, the bone tools and the beads. It also presents aspects of geoarchaeology and ground penetrating radar analyses. Some of the detailed plans and sections were prepared by the use of photogrammetry

PadChest: A large chest x-ray image dataset with multi-label annotated reports

We present a labeled large-scale, high resolution chest x-ray dataset for the automated exploration of medical images along with their associated reports. This dataset includes more than 160,000 images obtained from 67,000 patients that were interpreted and reported by radiologists at Hospital San Juan Hospital (Spain) from 2009 to 2017, covering six different position views and additional information on image acquisition and patient demography. The reports were labeled with 174 different radiographic findings, 19 differential diagnoses and 104 anatomic locations organized as a hierarchical taxonomy and mapped onto standard Unified Medical Language System (UMLS) terminology. Of these reports, 27% were manually annotated by trained physicians and the remaining set was labeled using a supervised method based on a recurrent neural network with attention mechanisms. The labels generated were then validated in an independent test set achieving a 0.93 Micro-F1 score. To the best of our knowledge, this is one of the largest public chest x-ray database suitable for training supervised models concerning radiographs, and the first to contain radiographic reports in Spanish. The PadChest dataset can be downloaded from http://bimcv.cipf.es/bimcv-projects/padchest/

Neural Networks for Modeling and Control of Particle Accelerators

We describe some of the challenges of particle accelerator control, highlight recent advances in neural network techniques, discuss some promising avenues for incorporating neural networks into particle accelerator control systems, and describe a neural network-based control system that is being developed for resonance control of an RF electron gun at the Fermilab Accelerator Science and Technology (FAST) facility, including initial experimental results from a benchmark controller.Comment: 21 p

Framework for 3D data modeling and Web visualization of underground caves using open source tools

Terrestrial Laser Scanning is a very useful technique for cave studies. This surveying method creates point clouds with high detail levels for 3D model generation, which is indeed useful for either reconstruction, geomorphological studies or virtual visits of caves. The present work generated a 3D model of a cave chamber and developed a framework for 3D data visualization on the Web. Identifying geomorphological structures is one of the goals of this project. The generated 3D-mesh represents the surface model of the cave chamber, which is important to study its geomorphological features. A topological structure of the 3D-mesh was implemented to get an efficient algorithm to help determining stalactites. The recognition and positioning of cave stalactites can provide information on hidden cave features responsible for cave geomorphology. The possibility to publish 3D data on the Web is of particular interest for the geospatial field. For this reason, it was decided to make the cave model available in the Web by developing a 3D graphical interface where users can navigate and interact with the threedimensional models of the cave. For this Web framework, X3D, WebGL and X3DOM were used. Such solution does not require any additional plug-ins or components

Shared and unique patterns of embryo development in extremophile poeciliids

Background: Closely related lineages of livebearing fishes have independently adapted to two extreme environmental factors: toxic hydrogen sulphide (H2S) and perpetual darkness. Previous work has demonstrated in adult specimens that fish from these extreme habitats convergently evolved drastically increased head and offspring size, while cave fish are further characterized by reduced pigmentation and eye size. Here, we traced the development of these (and other) divergent traits in embryos of Poecilia mexicana from benign surface habitats (“surface mollies”) and a sulphidic cave (“cave mollies”), as well as in embryos of the sister taxon, Poecilia sulphuraria from a sulphidic surface spring (“sulphur mollies”). We asked at which points during development changes in the timing of the involved processes (i.e., heterochrony) would be detectible. Methods and Results: Data were extracted from digital photographs taken of representative embryos for each stage of development and each type of molly. Embryo mass decreased in convergent fashion, but we found patterns of embryonic fat content and ovum/embryo diameter to be divergent among all three types of mollies. The intensity of yellow colouration of the yolk (a proxy for carotenoid content) was significantly lower in cave mollies throughout development. Moreover, while relative head size decreased through development in surface mollies, it increased in both types of extremophile mollies, and eye growth was arrested in mid-stage embryos of cave mollies but not in surface or sulphur mollies. Conclusion: Our results clearly demonstrate that even among sister taxa convergence in phenotypic traits is not always achieved by the same processes during embryo development. Furthermore, teleost development is crucially dependent on sufficient carotenoid stores in the yolk, and so we discuss how the apparent ability of cave mollies to overcome this carotenoid-dependency may represent another potential mechanism explaining the lack of gene flow between surface and cave mollies

Analysis of zooarchaelogical and taphonomical variability from Maripe Cave site, Santa Cruz Province, Argentinian Patagonia

This paper compares two zooarchaeological sub-samples, each of which comes from different areas (North chamber and South chamber) of Maripe Cave Site (Santa Cruz, Argentina). In previous papers, each chamber was interpreted as a particular microenvironment based on their specific environmental and geoarchaeological features. In both areas hunting-gatherer society occupations were recorded since the Pleistocene-Holocene transition to late Holocene. In this paper, we investigated and discussed the different agents and processes involved in the formation of each assemblage, with the aim of assessing the taphonomic variability between the two areas and discussing their integrity. In this way we analyzed bone specimens with three-dimensional assignment of Lama guanicoe (guanaco), the most common species on the site. To this purpose, we studied the bone surfaces of specimens by means of naked eye observations and binocular magnifying to 10X, which allowed us to recognize different patterns of modification. The representation of guanaco anatomical units was also discussed at each chamber according to economic utility and BMD values. The results indicate that while there was a participation of different natural agents and processes acted differently in each sector, the main accumulator agent in both sets was the human. Differences between both chambers are observed in the representation of anatomical units, in processing marks, in the conservation of specimens, and in the number and intensity performed by each natural agents and process in each sector. Each chamber evidences different taphonomic histories; the North Chamber records greater conservation and archaeological integrity while the South Chamber shows a more complex taphonomy.Fil: Marchionni, Laura. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Arqueología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; ArgentinaFil: Mosquera, Bruno Hernan. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Arqueología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; ArgentinaFil: García Añino, Eloisa. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Arqueología; Argentin

Cave chamber data modeling and 3D Web visualization

Underground caves and its specific structures are important for geomorphological studies. In this paper we present tools to identify and map speleothems by surveying cave chambers interiors. The cave chamber was surveyed using Terrestrial Laser Scanning to acquire point clouds with high level of detail for 3D model generation. This data with 45 million points is useful for either reconstruction, geomorphological studies or virtual visits of caves. With this point cloud we generated a 3D-mesh to represent the surface model of the cave chamber, which is important to study its geomorphological features. A topological structure of the 3D-mesh was also implemented to get an efficient algorithm to help identifying stalactites. The possibility to publish 3D data on the Web is of particular interest for the geospatial field. For this reason, it was decided to make the cave model available in the Web by developing a 3D graphical interface where users can navigate and interact with the three-dimensional models of the cave. For this Web3D framework it was used X3D, WebGL and X3DOM. Such solution does not require any additional plug-ins or components

High-resolution digital 3D models of Algar do Penico Chamber: limitations, challenges, and potential

The study of karst and its geomorphological structures is important for understanding the relationships between hydrology and climate over geological time. In that context, we conducted a terrestrial laser-scan survey to map geomorphological structures in the karst cave of Algar do Penico in southern Portugal. The point cloud data set obtained was used to generate 3D meshes with different levels of detail, allowing the limitations of mapping capabilities to be explored. In addition to cave mapping, the study focuses on 3D-mesh analysis, including the development of two algorithms for determination of stalactite extremities and contour lines, and on the interactive visualization of 3D meshes on the Web. Data processing and analysis were performed using freely available open-source software. For interactive visualization, we adopted a framework based on Web standards X3D, WebGL, and X3DOM. This solution gives both the general public and researchers access to 3D models and to additional data produced from map tools analyses through a web browser, without the need for plug-ins

Behaviour of the Pleistocene marsupial lion deduced from claw marks in a southwestern Australian cave

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/The marsupial lion, Thylacoleo carnifex, was the largest-ever marsupial carnivore, and is one of the most iconic extinct Australian vertebrates. With a highly-specialised dentition, powerful forelimbs and a robust build, its overall morphology is not approached by any other mammal. However, despite >150 years of attention, fundamental aspects of its biology remain unresolved. Here we analyse an assemblage of claw marks preserved on surfaces in a cave and deduce that they were generated by marsupial lions. The distribution and skewed size range of claw marks within the cave elucidate two key aspects of marsupial lion biology: they were excellent climbers and reared young in caves. Scrutiny of >10,000 co-located Pleistocene bones reveals few if any marsupial lion tooth marks, which dovetails with the morphology-based interpretation of the species as a flesh specialist

Kunsia tomentosus (Rodentia: Cricetidae)

Kunsia tomentosus (Lichtenstein, 1830), the woolly giant rat, is a semifossorial cricetid typically associated with the Cerrado and Beni domains in central South America. Kunsia was recently revised and includes only 1 species. It is the largest extant sigmondontine and is readily distinguishable by its size, a body covered with dark-gray fur that is coarse and dense, moderately short tail, short limbs, bicolored manus and pes, and long, powerful claws. It inhabits primarily open grasslands and savannas from central and southwestern Brazil and northern Bolivia. K. tomentosus presently is not considered threatened; however, westernmost populations have presumably been extirpated in the past 2 centuries.Fil: Bezerra, Alexandra M. R.. Universidade do Brasília; Brasil. Escola Nacional de Saude Publica Sergio Arouca. Fundación Oswaldo Cruz; BrasilFil: Pardiñas, Ulises Francisco J.. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto de Diversidad y Evolución Austral; Argentin