An ultrasonic system for intravascular measurement and visualisation of anatomical structures and blood flow

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MEMS Technology for Biomedical Imaging Applications

Biomedical imaging is the key technique and process to create informative images of the human body or other organic structures for clinical purposes or medical science. Micro-electro-mechanical systems (MEMS) technology has demonstrated enormous potential in biomedical imaging applications due to its outstanding advantages of, for instance, miniaturization, high speed, higher resolution, and convenience of batch fabrication. There are many advancements and breakthroughs developing in the academic community, and there are a few challenges raised accordingly upon the designs, structures, fabrication, integration, and applications of MEMS for all kinds of biomedical imaging. This Special Issue aims to collate and showcase research papers, short commutations, perspectives, and insightful review articles from esteemed colleagues that demonstrate: (1) original works on the topic of MEMS components or devices based on various kinds of mechanisms for biomedical imaging; and (2) new developments and potentials of applying MEMS technology of any kind in biomedical imaging. The objective of this special session is to provide insightful information regarding the technological advancements for the researchers in the community

Endoscopic Optical Coherence Tomography: Design and Application

This thesis presents an investigation on endoscopic optical coherence tomography (OCT). As a noninvasive imaging modality, OCT emerges as an increasingly important diagnostic tool for many clinical applications. Despite of many of its merits, such as high resolution and depth resolvability, a major limitation is the relatively shallow penetration depth in tissue (about 2∼3 mm). This is mainly due to tissue scattering and absorption. To overcome this limitation, people have been developing many different endoscopic OCT systems. By utilizing a minimally invasive endoscope, the OCT probing beam can be brought to the close vicinity of the tissue of interest and bypass the scattering of intervening tissues so that it can collect the reflected light signal from desired depth and provide a clear image representing the physiological structure of the region, which can not be disclosed by traditional OCT. In this thesis, three endoscope designs have been studied. While they rely on vastly different principles, they all converge to solve this long-standing problem. A hand-held endoscope with manual scanning is first explored. When a user is holding a hand- held endoscope to examine samples, the movement of the device provides a natural scanning. We proposed and implemented an optical tracking system to estimate and record the trajectory of the device. By registering the OCT axial scan with the spatial information obtained from the tracking system, one can use this system to simply ‘paint’ a desired volume and get any arbitrary scanning pattern by manually waving the endoscope over the region of interest. The accuracy of the tracking system was measured to be about 10 microns, which is comparable to the lateral resolution of most OCT system. Targeted phantom sample and biological samples were manually scanned and the reconstructed images verified the method. Next, we investigated a mechanical way to steer the beam in an OCT endoscope, which is termed as Paired-angle-rotation scanning (PARS). This concept was proposed by my colleague and we further developed this technology by enhancing the longevity of the device, reducing the diameter of the probe, and shrinking down the form factor of the hand-piece. Several families of probes have been designed and fabricated with various optical performances. They have been applied to different applications, including the collector channel examination for glaucoma stent implantation, and vitreous remnant detection during live animal vitrectomy. Lastly a novel non-moving scanning method has been devised. This approach is based on the EO effect of a KTN crystal. With Ohmic contact of the electrodes, the KTN crystal can exhibit a special mode of EO effect, termed as space-charge-controlled electro-optic effect, where the carrier electron will be injected into the material via the Ohmic contact. By applying a high voltage across the material, a linear phase profile can be built under this mode, which in turn deflects the light beam passing through. We constructed a relay telescope to adapt the KTN deflector into a bench top OCT scanning system. One of major technical challenges for this system is the strong chromatic dispersion of KTN crystal within the wavelength band of OCT system. We investigated its impact on the acquired OCT images and proposed a new approach to estimate and compensate the actual dispersion. Comparing with traditional methods, the new method is more computational efficient and accurate. Some biological samples were scanned by this KTN based system. The acquired images justified the feasibility of the usage of this system into a endoscopy setting. My research above all aims to provide solutions to implement an OCT endoscope. As technology evolves from manual, to mechanical, and to electrical approaches, different solutions are presented. Since all have their own advantages and disadvantages, one has to determine the actual requirements and select the best fit for a specific application.</p

Semiconductor Infrared Devices and Applications

Infrared (IR) technologies—from Herschel’s initial experiment in the 1800s to thermal detector development in the 1900s, followed by defense-focused developments using HgCdTe—have now incorporated a myriad of novel materials for a wide variety of applications in numerous high-impact fields. These include astronomy applications; composition identifications; toxic gas and explosive detection; medical diagnostics; and industrial, commercial, imaging, and security applications. Various types of semiconductor-based (including quantum well, dot, ring, wire, dot in well, hetero and/or homo junction, Type II super lattice, and Schottky) IR (photon) detectors, based on various materials (type IV, III-V, and II-VI), have been developed to satisfy these needs. Currently, room temperature detectors operating over a wide wavelength range from near IR to terahertz are available in various forms, including focal plane array cameras. Recent advances include performance enhancements by using surface Plasmon and ultrafast, high-sensitivity 2D materials for infrared sensing. Specialized detectors with features such as multiband, selectable wavelength, polarization sensitive, high operating temperature, and high performance (including but not limited to very low dark currents) are also being developed. This Special Issue highlights advances in these various types of infrared detectors based on various material systems

An Optofluidic Lens Biochip and an x-ray Readable Blood Pressure Microsensor: Versatile Tools for in vitro and in vivo Diagnostics.

Three different microfabricated devices were presented for use in vivo and in vitro diagnostic biomedical applications: an optofluidic-lens biochip, a hand held digital imaging system and an x-ray readable blood pressure sensor for monitoring restenosis. An optofluidic biochip–termed the ‘Microfluidic-based Oil-Immersion Lens’ (mOIL) biochip were designed, fabricated and test for high-resolution imaging of various biological samples. The biochip consists of an array of high refractive index (n = 1.77) sapphire ball lenses sitting on top of an oil-filled microfluidic network of microchambers. The combination of the high optical quality lenses with the immersion oil results in a numerical aperture (NA) of 1.2 which is comparable to the high NA of oil immersion microscope objectives. The biochip can be used as an add-on-module to a stereoscope to improve the resolution from 10 microns down to 0.7 microns. It also has a scalable field of view (FOV) as the total FOV increases linearly with the number of lenses in the biochip (each lens has ~200 microns FOV). By combining the mOIL biochip with a CMOS sensor, a LED light source in 3D printed housing, a compact (40 grams, 4cmx4cmx4cm) high resolution (~0.4 microns) hand held imaging system was developed. The applicability of this system was demonstrated by counting red and white blood cells and imaging fluorescently labelled cells. In blood smear samples, blood cells, sickle cells, and malaria-infected cells were easily identified. To monitor restenosis, an x-ray readable implantable blood pressure sensor was developed. The sensor is based on the use of an x-ray absorbing liquid contained in a microchamber. The microchamber has a flexible membrane that is exposed to blood pressure. When the membrane deflects, the liquid moves into the microfluidic-gauge. The length of the microfluidic-gauge can be measured and consequently the applied pressure exerted on the diaphragm can be calculated. The prototype sensor has dimensions of 1x0.6x10mm and adequate resolution (19mmHg) to detect restenosis in coronary artery stents from a standard chest x-ray. Further improvements of our prototype will open up the possibility of measuring pressure drop in a coronary artery stent in a non-invasively manner.PhDMacromolecular Science and EngineeringUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttp://deepblue.lib.umich.edu/bitstream/2027.42/111384/1/toning_1.pd

HIGH-SPEED ENDOSCOPIC OPTICAL COHERENCE TOMOGRAPHY AND ITS APPLICATIONS

Optical coherence tomography (OCT) is a real-time high-resolution imaging technology providing cross-sectional images of biological structures at a resolution of <1 to 20 µm and a penetration depth of 1 to 3 mm in most highly scattering tissues. OCT is in general non-invasive and can perform real-time ‘optical biopsy’ with a resolution approaching standard low magnification histopathology but without tissue removal. Conventional OCT requires a bulky imaging probe, which limits most of the in vivo applications to ophthalmology and dermatology. The development of miniature OCT imaging probe has greatly expanded the scope of the applications (e.g., cardiology, gastroenterology, etc.). Recent technical advances in OCT has extended the imaging speed from a few kHz to a few hundreds kHz, enabling in vivo three-dimensional (3D) imaging. This dissertation describes the development of a high-speed endoscopic OCT imaging system. The system employs the Fourier domain mode locking laser technology at a wavelength range of 1300 nm to reach an axial resolution of 9.7 µm and an A-scan rate of 220 kHz. A Mach-Zehnder interferometer setup is used to achieve shot-noise limited detection. A generic OCT software platform is developed for data acquisition, processing, display, storage, and 3D visualization. Miniature OCT imaging probes are designed and fabricated for in vivo 3D OCT imaging. The utility of the high-speed endoscopic OCT system is demonstrated for clinical and basic researches in pulmonology and gastroenterology. In addition, an ultrahigh-resolution endoscopic OCT system is developed at a wavelength range of 800 nm to reach an axial resolution of 3.0 µm and an A-scan rate of up to 20 kHz. Furthermore, a novel type of OCT contrast agents, scattering dominant gold nanocages, is developed with the aid of a cross-reference OCT imaging method. Finally, a multimodal endoscopic imaging system combines 1300 nm en face OCT and 1550 nm two photon fluorescence is developed. Compared with most of other imaging modalities, high-speed endoscopic OCT has unmatched advantages including high spatial resolution, imaging speed, and non-invasiveness / minimal invasiveness. The results in this dissertation suggest that high-speed endoscopic OCT may has a great impact on healthcare as well as basic research

Characterization of flow dynamics in vessels with complex geometry using Doppler optical coherence tomography

The study of flow dynamics in complex geometry vessels is highly important in many biomedical applications where the knowledge of the mechanic interactions between the moving fluid and the housing media plays a key role for the determination of the parameters of interest, including the effect of blood flow on the possible rupture of atherosclerotic plaques. Doppler Optical Coherence Tomography (DOCT) is an optic, non-contact, non-invasive technique able to achieve detailed analysis of the flow/vessel interactions, allowing simultaneously high resolution imaging of the morphology and composition of the vessel and of the flow velocity distribution along the measured cross-section. DOCT system was developed to image high-resolution one-dimensional and multi-dimensional velocity distribution profiles of Newtonian and non-Newtonian fluids flowing in vessels with complex geometry, including Y-shaped and T-shaped vessels, vessels with aneurism, bifurcated vessels with deployed stent and scaffolds. The phantoms were built to study the interaction of the flow dynamics with different channel geometries and to map the related velocity profiles at several inlet volume flow rates. Feasibility studies for quantitative observation of the turbulence of flows arising within the complex geometry vessels are discussed. In addition, optical clearing of skin tissues has been utilized to achieve DOCT imaging of human blood vessels in vivo, at a depth up to 1.7 mm. Two-dimensional OCT images of complex flow velocity profiles in blood vessel phantom and in vivo subcutaneous human skin tissues are presented. The effect of optical clearing on in vivo images is demonstrated and discussed. DOCT was also applied for imaging scaffold structures and for mapping flow distributions within the scaffold.EThOS - Electronic Theses Online ServiceGBUnited Kingdo

Microgripper force feedback integration using piezoresistive cantilever structure

Force feedback is an important feature in most microgripper applications, but it is commonly overlooked. To successfully implement this feature, a cantilever structure has been designed and fabricated to integrate force feedback into a microhand gripper. The piezoresistive properties of doped polysilicon are used to transduce the mechanical stress of an object pressing against the cantilever sensor, resulting in a change in resistance or voltage capable of being monitored with external hardware. The force sensing structure was designed to have a fabrication process compatible with that of the microhand, allowing for their eventual integration. This fabrication process uses both bulk and surface micromachining techniques to create the cantilever structure, a balloon actuator (utilized in the microhand), and the interconnect to interact with both the electrical sensors and the pneumatic actuators. The prototype fabrication successfully defined the majority of the MEMS device with the exception of the final step. The release of the cantilever failed due to underetching of the entire device rather than just the cantilever, which was desired. Recommendations to solve this problem and improve the fabrication process are presented

Innovative micro-NMR/MRI functionality utilizing flexible electronics and control systems

Das zentrale Thema dieser Arbeit ist die Entwicklung und Integration von flexibler Elektronik für Mikro-Magnetresonanz (MR)-Anwendungen. Zwei wichtige Anwendungen wurden in der Dissertation behandelt; eine Anwendung auf dem Gebiet der Magnetresonanztomographie (MRI) und die andere auf dem Gebiet der Kernspinresonanz (NMR). Die MRI-Anwendung konzentriert sich auf die Lösung der Sicherheits- und Zuverlässigkeitsaspekte von MR-Kathetern. Die NMR-Anwendung stellt einen neuartigen Ansatz zur Steigerung des Durchsatzes bei der NMR-Spektroskopie vor. Der erste Teil der Dissertation behandelt die verschiedenen Technologien die zur Herstellung flexibler Elektronik auf der Mikroskala entwickelt wurden. Die behandelten MR-Anwendungen erfordern die Herstellung von Induktoren, Kondensatoren und Dioden auf flexiblen Substraten. Die erste Technologie, die im Rahmen der Mikrofabrikation behandelt wird, ist das Aufbringen einer leitfähigen Startschicht auf flexiblen Substraten. Es wurden verschiedene Techniken getestet und verglichen. Die entwickelte Technologie ermöglicht die Herstellung einer mehrschichtigen leitfähigen Struktur auf einem flexiblen Substrat (50 $\mu$m Dicke), die sich zum Umwickeln eines schlanken Rohres (>0,5 mm Durchmesser) eignet. Die zweite Methode ist der Tintenstrahldruck von Kondensatoren mit hoher Dichte und niedrigem Verlustkoeffizienten. Zwei dielektrische Tinten auf Polymerbasis wurden synthetisiert, durch die Dispersion von TiO$_2$ und BaTiO$_3$ in Benzocyclobuten (BCB) Polymer. Die im Tintenstrahldruckverfahren hergestellten Kondensatoren zeigen eine relativ hohe Kapazität pro Flächeneinheit von bis zu 69 pFmm$^{-2}$ und erreichen dabei einen Qualitätsfaktor (Q) von etwa 100. Außerdem wurde eine Technik für eine tintenstrahlgedruckte gleichrichtende Schottky-Diode entwickelt. Die letzte behandelte Technologie ist die Galvanisierung der leitenden Startschichten. Die Galvanik ist eine gut erforschte Technologie und ein sehr wichtiger Prozess auf dem Gebiet der Mikrofabrikation. Sie ist jedoch in hohem Maße von der Erfahrung des Bedieners abhängig. Darüber hinaus ist eine präzise Steuerung der Galvanikleistung erforderlich, insbesondere bei der Herstellung kleiner Strukturen, wobei sich die Pulsgalvanik als ein Verfahren erwiesen hat, das ein hohes Maß an Kontrolle über die abgeschiedene Struktur bietet. In diesem Zusammenhang wurde eine hochflexible Stromquelle auf Basis einer Mikrocontroller-Einheit entwickelt, um Genauigkeit in die Erstellung optimaler Galvanikrezepte zu bringen. Die Stromquelle wurde auf Basis einer modifizierten Howland-Stromquelle (MHCS) unter Verwendung eines Hochleistungs-Operationsverstärkers (OPAMP) aufgebaut. Die Stromquelle wurde validiert und verifiziert, und ihre hohe Leistungsfähigkeit wurde durch die Durchführung einiger schwieriger Anwendungen demonstriert, von denen die wichtigste die Verbesserung der Haftung der im Tintenstrahldruckverfahren gedruckten Startschicht auf flexiblen Substraten ist. Der zweite Teil der Dissertation befasst sich mit interventioneller MRT mittels MR-Katheter. MR-Katheter haben potenziell einen erheblichen Einfluss auf den Bereich der minimalinvasiven medizinischen Eingriffe. Implantierte längliche Übertragungsleiter und Detektorspulen wirken wie eine Antenne und koppeln sich an das MR-Hochfrequenz (HF)-Sendefeld an und machen so den Katheter während des Einsatzes in einem MRT-Scanner sichtbar. Durch diese Kopplung können sich die Leiter jedoch erhitzen, was zu einer gefährlichen Erwärmung des Gewebes führt und eine breite Anwendung dieser Technologie bisher verhindert hat. Ein alternativer Ansatz besteht darin, einen Resonator an der Katheterspitze induktive mit einer Oberflächenspule außerhalb des Körpers zu koppeln. Allerdings könnte sich auch dieser Mikroresonator an der Katheterspitze während der Anregungsphase erwärmen. Außerdem ändert sich die Sichtbarkeit der Katheterspitze, wenn sich die axiale Ausrichtung des Katheters während der Bewegung ändert, und kann verloren gehen, wenn die Magnetfelder des drahtlosen Resonators und der externen Spule orthogonal sind. In diesem Beitrag wird die Abstimmkapazität des Mikrodetektors des Katheters drahtlos über eine Impulsfolgensteuerung gesteuert, die an einen HF-Abstimmkreis gesendet wird, der in eine Detektorspule integriert ist. Der integrierte Schaltkreis erzeugt Gleichstrom aus dem übertragenen HF Signal zur Steuerung der Kapazität aus der Ferne, wodurch ein intelligenter eingebetteter abstimmbarer Detektor an der Katheterspitze entsteht. Während der HF-Übertragung erfolgt die Entkopplung durch eine Feinabstimmung der Detektorbetriebsfrequenz weg von der Larmor-Frequenz. Zusätzlich wird ein neuartiges Detektordesign eingeführt, das auf zwei senkrecht ausgerichteten Mikro-Saddle-Spulen basiert, die eine konstante Sichtbarkeit des Katheters für den gesamten Bereich der axialen Ausrichtungen ohne toten Winkel gewährleisten. Das System wurde experimentell in einem 1T MRT-Scanner verifiziert. Der dritte Teil der Dissertation befasst sich mit dem Durchsatz von NMR-Spektroskopie. Flussbasierte NMR ist eine vielversprechende Technik zur Verbesserung des NMR-Durchsatzes. Eine häufige Herausforderung ist jedoch das relativ große Totvolumen im Schlauch, der den NMR-Detektor speist. In diesem Beitrag wird ein neuartiger Ansatz für vollautomatische NMR-Spektroskopie mit hohem Durchsatz und verbesserter Massensensitivität vorgestellt. Der entwickelte Ansatz wird durch die Nutzung von Mikrofluidik-Technologien in Kombination mit Dünnfilm-Mikro-NMR-Detektoren verwirklicht. Es wurde ein passender NMR-Sensor mit einem mikrofluidischen System entwickelt, das Folgendes umfasst: i) einen Mikro-Sattel-Detektor für die NMR-Spektroskopie und ii) ein Paar Durchflusssensoren, die den NMR-Detektor flankieren und an eine Mikrocontrollereinheit angeschlossen sind. Ein mikrofluidischer Schlauch wird verwendet, um eine Probenserie durch den Sondenkopf zu transportieren, die einzelnen Probenbereiche sind durch eine nicht mischbare Flüssigkeit getrennt, das System erlaubt im Prinzip eine unbegrenzte Anzahl an Proben. Das entwickelte System verfolgt die Position und Geschwindigkeit der Proben in diesem zweiphasigen Fluss und synchronisiert die NMR-Akquisition. Der entwickelte kundenspezifische Sondenkopf ist Plug-and-Play-fähig mit marktüblichen NMR-Systemen. Das System wurde erfolgreich zur Automatisierung von flussbasierten NMR-Messungen in einem 500 MHz NMR-System eingesetzt. Der entwickelte Mikro-NMR-Detektor ermöglicht hochauflösende Spektroskopie mit einer NMR-Empfindlichkeit von 2,18 nmol s$^{1/2}$ bei Betrieb der Durchflusssensoren. Die Durchflusssensoren wiesen eine hohe Empfindlichkeit bis zu einem absoluten Unterschied von 0,2 in der relativen Permittivität auf, was eine Differenzierung zwischen den meisten gängigen Lösungsmitteln ermöglichte. Es wurde gezeigt, dass eine vollautomatische NMR-Spektroskopie von neun verschiedenen 120 $\mu$L Proben innerhalb von 3,6 min oder effektiv 15,3 s pro Probe erreicht werden konnte

Development of three-dimensional, ex vivo optical imaging

The ability to analyse tissue in 3-D at the mesoscopic scale (resolution: 2-50 µm) has proven essential in the study of whole specimens and individual organs. Techniques such as ex vivo magnetic resonance imaging (MRI) and X-ray computed tomography (CT) have been successful in a number of applications. Although MRI has been used to image embryo development and gene expression in 3-D, its resolution is not sufficient to discriminate between the small structures in embryos and individual organs. Furthermore, since neither MRI nor X-ray CT are optical imaging techniques, none of them is able to make use of common staining techniques. 3-D images can be generated with confocal microscopy by focusing a laser beam to a point within the sample and collecting the fluorescent light coming from that specific plane, eliminating therefore out-of-focus light. However, the main drawback of this microscopy technique is the limited depth penetration of light (~1 mm). Tomographic techniques such as optical projection tomography (OPT) and light sheet fluorescence microscopy (also known as single plane illumination microscopy, SPIM) are novel methods that fulfil a requirement for imaging of specimens which are too large for confocal imaging and too small for conventional MRI. To allow sufficient depth penetration, these approaches require specimens to be rendered transparent via a process known as optical clearing, which can be achieved using a number of techniques. The aim of the work presented in this thesis was to develop methods for threedimensional, ex vivo optical imaging. This required, in first instance, sample preparation to clear (render transparent) biological tissue. In this project several optical clearing techniques have been tested in order to find the optimal method per each kind of tissue, focusing on tumour tissue. Indeed, depending on its structure and composition (e.g. amount of lipids or pigments within the tissue) every tissue clears at a different degree. Though there is currently no literature reporting quantification of the degree of optical clearing. Hence a novel, spectroscopic technique for measuring the light attenuation in optically cleared samples is described in this thesis and evaluated on mouse brain. 5 Optical clearing was applied to the study of cancer. The main cancer model investigated in this report is colorectal carcinoma. Fluorescently labelled proteins were used to analyse the vascular network of colorectal xenograft tumours and to prove the effect of vascular disrupting agents on the vascular tumour network. Furthermore, optical clearing and fluorescent compounds were used for ex vivo analysis of perfusion of a human colorectal liver metastasis model