8 research outputs found

    Information retrieval and text mining technologies for chemistry

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    Efficient access to chemical information contained in scientific literature, patents, technical reports, or the web is a pressing need shared by researchers and patent attorneys from different chemical disciplines. Retrieval of important chemical information in most cases starts with finding relevant documents for a particular chemical compound or family. Targeted retrieval of chemical documents is closely connected to the automatic recognition of chemical entities in the text, which commonly involves the extraction of the entire list of chemicals mentioned in a document, including any associated information. In this Review, we provide a comprehensive and in-depth description of fundamental concepts, technical implementations, and current technologies for meeting these information demands. A strong focus is placed on community challenges addressing systems performance, more particularly CHEMDNER and CHEMDNER patents tasks of BioCreative IV and V, respectively. Considering the growing interest in the construction of automatically annotated chemical knowledge bases that integrate chemical information and biological data, cheminformatics approaches for mapping the extracted chemical names into chemical structures and their subsequent annotation together with text mining applications for linking chemistry with biological information are also presented. Finally, future trends and current challenges are highlighted as a roadmap proposal for research in this emerging field.A.V. and M.K. acknowledge funding from the European Community’s Horizon 2020 Program (project reference: 654021 - OpenMinted). M.K. additionally acknowledges the Encomienda MINETAD-CNIO as part of the Plan for the Advancement of Language Technology. O.R. and J.O. thank the Foundation for Applied Medical Research (FIMA), University of Navarra (Pamplona, Spain). This work was partially funded by Consellería de Cultura, Educación e Ordenación Universitaria (Xunta de Galicia), and FEDER (European Union), and the Portuguese Foundation for Science and Technology (FCT) under the scope of the strategic funding of UID/BIO/04469/2013 unit and COMPETE 2020 (POCI-01-0145-FEDER-006684). We thank Iñigo Garciá -Yoldi for useful feedback and discussions during the preparation of the manuscript.info:eu-repo/semantics/publishedVersio

    CWM Global Search—The Internet Search Engine for Chemists and Biologists

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    CWM Global Search is a meta-search engine allowing chemists and biologists to search the major chemical and biological databases on the Internet, by structure, synonyms, CAS Registry Numbers and free text. A meta-search engine is a search tool that sends user requests to several other search engines and/or databases and aggregates the results into a single list or displays them according to their source [1]. CWM Global Search is a web application that has many of the characteristics of desktop applications (also known as Rich Internet Application, RIA), and it runs on both Windows and Macintosh platforms. The application is one of the first RIA for scientists. The application can be started using the URL http://cwmglobalsearch.com/gsweb

    Suva Stories

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    Suva Stories explores a fascinating tapestry of histories in one of the Pacific's oldest and most culturally diverse urban centres, the capital of Fiji. Charting the trajectory of Suva from indigenous village to colonial hub to contemporary Pacific metropolis, it draws on a rich colonial archive and moving personal memoirs that bear witness to their time. The diverse contributions in this volume form a complex mosaic of urban lives and histories that contribute fresh insights into historical and ongoing debates about race, place and belonging. Suva Stories is a valuable companion to those seeking to engage with the city’s pasts and present, and will prompt new conversations about history and memory in Fiji

    Suva Stories

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    Suva Stories explores a fascinating tapestry of histories in one of the Pacific's oldest and most culturally diverse urban centres, the capital of Fiji. Charting the trajectory of Suva from indigenous village to colonial hub to contemporary Pacific metropolis, it draws on a rich colonial archive and moving personal memoirs that bear witness to their time. The diverse contributions in this volume form a complex mosaic of urban lives and histories that contribute fresh insights into historical and ongoing debates about race, place and belonging. Suva Stories is a valuable companion to those seeking to engage with the city’s pasts and present, and will prompt new conversations about history and memory in Fiji

    Applied Ecology and Environmental Research 2017

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