Abstract State Machines 1988-1998: Commented ASM Bibliography

An annotated bibliography of papers which deal with or use Abstract State Machines (ASMs), as of January 1998.Comment: Also maintained as a BibTeX file at http://www.eecs.umich.edu/gasm

Reconfigurable Decorated PT Nets with Inhibitor Arcs and Transition Priorities

In this paper we deal with additional control structures for decorated PT Nets. The main contribution are inhibitor arcs and priorities. The first ensure that a marking can inhibit the firing of a transition. Inhibitor arcs force that the transition may only fire when the place is empty. an order of transitions restrict the firing, so that an transition may fire only if it has the highest priority of all enabled transitions. This concept is shown to be compatible with reconfigurable Petri nets

On the possible Computational Power of the Human Mind

The aim of this paper is to address the question: Can an artificial neural network (ANN) model be used as a possible characterization of the power of the human mind? We will discuss what might be the relationship between such a model and its natural counterpart. A possible characterization of the different power capabilities of the mind is suggested in terms of the information contained (in its computational complexity) or achievable by it. Such characterization takes advantage of recent results based on natural neural networks (NNN) and the computational power of arbitrary artificial neural networks (ANN). The possible acceptance of neural networks as the model of the human mind's operation makes the aforementioned quite relevant.Comment: Complexity, Science and Society Conference, 2005, University of Liverpool, UK. 23 page

Formalization of Universal Algebra in Agda

In this work we present a novel formalization of universal algebra in Agda. We show that heterogeneous signatures can be elegantly modelled in type-theory using sets indexed by arities to represent operations. We prove elementary results of heterogeneous algebras, including the proof that the term algebra is initial and the proofs of the three isomorphism theorems. We further formalize equational theory and prove soundness and completeness. At the end, we define (derived) signature morphisms, from which we get the contravariant functor between algebras; moreover, we also proved that, under some restrictions, the translation of a theory induces a contra-variant functor between models.Fil: Gunther, Emmanuel. Universidad Nacional de Córdoba. Facultad de Matemática, Astronomía y Física; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Gadea, Alejandro Emilio. Universidad Nacional de Córdoba. Facultad de Matemática, Astronomía y Física; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Pagano, Miguel Maria. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de Córdoba. Facultad de Matemática, Astronomía y Física; Argentin

The Tandem Duplication Distance Is NP-Hard

In computational biology, tandem duplication is an important biological phenomenon which can occur either at the genome or at the DNA level. A tandem duplication takes a copy of a genome segment and inserts it right after the segment - this can be represented as the string operation AXB ? AXXB. Tandem exon duplications have been found in many species such as human, fly or worm, and have been largely studied in computational biology. The Tandem Duplication (TD) distance problem we investigate in this paper is defined as follows: given two strings S and T over the same alphabet, compute the smallest sequence of tandem duplications required to convert S to T. The natural question of whether the TD distance can be computed in polynomial time was posed in 2004 by Leupold et al. and had remained open, despite the fact that tandem duplications have received much attention ever since. In this paper, we prove that this problem is NP-hard, settling the 16-year old open problem. We further show that this hardness holds even if all characters of S are distinct. This is known as the exemplar TD distance, which is of special relevance in bioinformatics. One of the tools we develop for the reduction is a new problem called the Cost-Effective Subgraph, for which we obtain W[1]-hardness results that might be of independent interest. We finally show that computing the exemplar TD distance between S and T is fixed-parameter tractable. Our results open the door to many other questions, and we conclude with several open problems

Two-sources Randomness Extractors for Elliptic Curves

This paper studies the task of two-sources randomness extractors for elliptic curves defined over finite fields $K$, where $K$ can be a prime or a binary field. In fact, we introduce new constructions of functions over elliptic curves which take in input two random points from two differents subgroups. In other words, for a ginven elliptic curve $E$ defined over a finite field $\mathbb{F}_q$ and two random points $P \in \mathcal{P}$ and $Q\in \mathcal{Q}$, where $\mathcal{P}$ and $\mathcal{Q}$ are two subgroups of $E(\mathbb{F}_q)$, our function extracts the least significant bits of the abscissa of the point $P\oplus Q$ when $q$ is a large prime, and the $k$-first $\mathbb{F}_p$ coefficients of the asbcissa of the point $P\oplus Q$ when $q = p^n$, where $p$ is a prime greater than $5$. We show that the extracted bits are close to uniform. Our construction extends some interesting randomness extractors for elliptic curves, namely those defined in \cite{op} and \cite{ciss1,ciss2}, when $\mathcal{P} = \mathcal{Q}$. The proposed constructions can be used in any cryptographic schemes which require extraction of random bits from two sources over elliptic curves, namely in key exchange protole, design of strong pseudo-random number generators, etc

An optimized conflict-free replicated set

Eventual consistency of replicated data supports concurrent updates, reduces latency and improves fault tolerance, but forgoes strong consistency. Accordingly, several cloud computing platforms implement eventually-consistent data types. The set is a widespread and useful abstraction, and many replicated set designs have been proposed. We present a reasoning abstraction, permutation equivalence, that systematizes the characterization of the expected concurrency semantics of concurrent types. Under this framework we present one of the existing conflict-free replicated data types, Observed-Remove Set. Furthermore, in order to decrease the size of meta-data, we propose a new optimization to avoid tombstones. This approach that can be transposed to other data types, such as maps, graphs or sequences.Comment: No. RR-8083 (2012

A Vernacular for Coherent Logic

We propose a simple, yet expressive proof representation from which proofs for different proof assistants can easily be generated. The representation uses only a few inference rules and is based on a frag- ment of first-order logic called coherent logic. Coherent logic has been recognized by a number of researchers as a suitable logic for many ev- eryday mathematical developments. The proposed proof representation is accompanied by a corresponding XML format and by a suite of XSL transformations for generating formal proofs for Isabelle/Isar and Coq, as well as proofs expressed in a natural language form (formatted in LATEX or in HTML). Also, our automated theorem prover for coherent logic exports proofs in the proposed XML format. All tools are publicly available, along with a set of sample theorems.Comment: CICM 2014 - Conferences on Intelligent Computer Mathematics (2014