Deep HMResNet Model for Human Activity-Aware Robotic Systems

Endowing the robotic systems with cognitive capabilities for recognizing daily activities of humans is an important challenge, which requires sophisticated and novel approaches. Most of the proposed approaches explore pattern recognition techniques which are generally based on hand-crafted features or learned features. In this paper, a novel Hierarchal Multichannel Deep Residual Network (HMResNet) model is proposed for robotic systems to recognize daily human activities in the ambient environments. The introduced model is comprised of multilevel fusion layers. The proposed Multichannel 1D Deep Residual Network model is, at the features level, combined with a Bottleneck MLP neural network to automatically extract robust features regardless of the hardware configuration and, at the decision level, is fully connected with an MLP neural network to recognize daily human activities. Empirical experiments on real-world datasets and an online demonstration are used for validating the proposed model. Results demonstrated that the proposed model outperforms the baseline models in daily human activity recognition.Comment: Presented at AI-HRI AAAI-FSS, 2018 (arXiv:1809.06606

Improving average ranking precision in user searches for biomedical research datasets

Availability of research datasets is keystone for health and life science study reproducibility and scientific progress. Due to the heterogeneity and complexity of these data, a main challenge to be overcome by research data management systems is to provide users with the best answers for their search queries. In the context of the 2016 bioCADDIE Dataset Retrieval Challenge, we investigate a novel ranking pipeline to improve the search of datasets used in biomedical experiments. Our system comprises a query expansion model based on word embeddings, a similarity measure algorithm that takes into consideration the relevance of the query terms, and a dataset categorisation method that boosts the rank of datasets matching query constraints. The system was evaluated using a corpus with 800k datasets and 21 annotated user queries. Our system provides competitive results when compared to the other challenge participants. In the official run, it achieved the highest infAP among the participants, being +22.3% higher than the median infAP of the participant's best submissions. Overall, it is ranked at top 2 if an aggregated metric using the best official measures per participant is considered. The query expansion method showed positive impact on the system's performance increasing our baseline up to +5.0% and +3.4% for the infAP and infNDCG metrics, respectively. Our similarity measure algorithm seems to be robust, in particular compared to Divergence From Randomness framework, having smaller performance variations under different training conditions. Finally, the result categorization did not have significant impact on the system's performance. We believe that our solution could be used to enhance biomedical dataset management systems. In particular, the use of data driven query expansion methods could be an alternative to the complexity of biomedical terminologies

Knowledge Extraction from Textual Resources through Semantic Web Tools and Advanced Machine Learning Algorithms for Applications in Various Domains

Nowadays there is a tremendous amount of unstructured data, often represented by texts, which is created and stored in variety of forms in many domains such as patients' health records, social networks comments, scientific publications, and so on. This volume of data represents an invaluable source of knowledge, but unfortunately it is challenging its mining for machines. At the same time, novel tools as well as advanced methodologies have been introduced in several domains, improving the efficacy and the efficiency of data-based services. Following this trend, this thesis shows how to parse data from text with Semantic Web based tools, feed data into Machine Learning methodologies, and produce services or resources to facilitate the execution of some tasks. More precisely, the use of Semantic Web technologies powered by Machine Learning algorithms has been investigated in the Healthcare and E-Learning domains through not yet experimented methodologies. Furthermore, this thesis investigates the use of some state-of-the-art tools to move data from texts to graphs for representing the knowledge contained in scientific literature. Finally, the use of a Semantic Web ontology and novel heuristics to detect insights from biological data in form of graph are presented. The thesis contributes to the scientific literature in terms of results and resources. Most of the material presented in this thesis derives from research papers published in international journals or conference proceedings

Evaluating BERT Embeddings for Text Classification in Bio-Medical Domain to Determine Eligibility of Patients in Clinical Trials

Clinical Trials are studies conducted by researchers in order to assess the impact of new medicine in terms of its efficacy and most importantly safety on human health. For any advancement in the field of medicine it is very important that clinical trials are conducted with right ethics supported by scientific evidence. Not all people who volunteer or participate in clinical trials are allowed to undergo the trials. Age, comorbidity and other health issues present in a patient can be a major factor to decide whether the profile is suitable or not for the trial. Profiles selected for clinical trials should be documented and also the profiles which were excluded. This research which took over a long time period conducted trials on 15,000 cancer drugs. Keeping track of so many trials, their outcomes and formulating a standard health guideline is easier said than done. In this paper, Text classification which is one of the primary assessment tasks in Natural Language Processing (NLP) is discussed. One of the most common problems in NLP, but it becomes complex when it is dealing with a specific domain like bio-medical which finds presence of quite a few jargons pertaining to the medical field. This paper proposes a framework with two major components comprising transformer architecture to produce embedding coupled with a text classifier. In the later section it is proved that pre-trained embeddings generated by BERT (Bidirectional Encoder Representations from Transformers) can perform as efficiently and achieve a better F1-score and accuracy than the current benchmark score which uses embeddings trained from the same dataset. The main contribution of this paper is the framework which can be extended to different bio-medical problems. The design can also be reused for different domains by fine-tuning. The framework also provides support for different optimization techniques like Mixed Precision, Dynamic Padding and Uniform Length Batching which improves performance by up to 3 times in GPU (Graphics Processing Unit) processors and by 60% in TPU (Tensor Processing Unit)

Exploring the Potential of Convolutional Neural Networks in Healthcare Engineering for Skin Disease Identification

Skin disorders affect millions of individuals worldwide, underscoring the urgency of swift and accurate detection for optimal treatment outcomes. Convolutional Neural Networks (CNNs) have emerged as valuable assets for automating the identification of skin ailments. This paper conducts an exhaustive examination of the latest advancements in CNN-driven skin condition detection. Within dermatological applications, CNNs proficiently analyze intricate visual motifs and extricate distinctive features from skin imaging datasets. By undergoing training on extensive data repositories, CNNs proficiently classify an array of skin maladies such as melanoma, psoriasis, eczema, and acne. The paper spotlights pivotal progressions in CNN-centered skin ailment diagnosis, encompassing diverse CNN architectures, refinement methodologies, and data augmentation tactics. Moreover, the integration of transfer learning and ensemble approaches has further amplified the efficacy of CNN models. Despite their substantial potential, there exist pertinent challenges. The comprehensive portrayal of skin afflictions and the mitigation of biases mandate access to extensive and varied data pools. The quest for comprehending the decision-making processes propelling CNN models remains an ongoing endeavor. Ethical quandaries like algorithmic predisposition and data privacy also warrant significant consideration. By meticulously scrutinizing the evolutions, obstacles, and potential of CNN-oriented skin disorder diagnosis, this critique provides invaluable insights to researchers and medical professionals. It underscores the importance of precise and efficacious diagnostic instruments in ameliorating patient outcomes and curbing healthcare expenditures