Publishing Chinese medicine knowledge as Linked Data on the Web

<p>Abstract</p> <p>Background</p> <p>Chinese medicine (CM) draws growing attention from Western healthcare practitioners and patients. However, the integration of CM knowledge and Western medicine (WM) has been hindered by a barrier of languages and cultures as well as a lack of scientific evidence for CM's efficacy and safety. In addition, most of CM knowledge published with relational database technology makes the integration of databases even more challenging.</p> <p>Methods</p> <p>Linked Data approach was used in publishing CM knowledge. This approach was applied to publishing a CM linked dataset, namely RDF-TCM <url>http://www.open-biomed.org.uk/rdf-tcm/</url> based on TCMGeneDIT, which provided association information about CM in English.</p> <p>Results</p> <p>The Linked Data approach made CM knowledge accessible through standards-compliant interfaces to facilitate the bridging of CM and WM. The open and programmatically-accessible RDF-TCM facilitated the creation of new data mash-up and novel federated query applications.</p> <p>Conclusion</p> <p>Publishing CM knowledge in Linked Data provides a point of departure for integration of CM databases.</p

Luzzu - A Framework for Linked Data Quality Assessment

With the increasing adoption and growth of the Linked Open Data cloud [9], with RDFa, Microformats and other ways of embedding data into ordinary Web pages, and with initiatives such as schema.org, the Web is currently being complemented with a Web of Data. Thus, the Web of Data shares many characteristics with the original Web of Documents, which also varies in quality. This heterogeneity makes it challenging to determine the quality of the data published on the Web and to subsequently make this information explicit to data consumers. The main contribution of this article is LUZZU, a quality assessment framework for Linked Open Data. Apart from providing quality metadata and quality problem reports that can be used for data cleaning, LUZZU is extensible: third party metrics can be easily plugged-in the framework. The framework does not rely on SPARQL endpoints, and is thus free of all the problems that come with them, such as query timeouts. Another advantage over SPARQL based qual- ity assessment frameworks is that metrics implemented in LUZZU can have more complex functionality than triple matching. Using the framework, we performed a quality assessment of a number of statistical linked datasets that are available on the LOD cloud. For this evaluation, 25 metrics from ten different dimensions were implemented

Building Semantic Knowledge Graphs from (Semi-)Structured Data: A Review

Knowledge graphs have, for the past decade, been a hot topic both in public and private domains, typically used for large-scale integration and analysis of data using graph-based data models. One of the central concepts in this area is the Semantic Web, with the vision of providing a well-defined meaning to information and services on the Web through a set of standards. Particularly, linked data and ontologies have been quite essential for data sharing, discovery, integration, and reuse. In this paper, we provide a systematic literature review on knowledge graph creation from structured and semi-structured data sources using Semantic Web technologies. The review takes into account four prominent publication venues, namely, Extended Semantic Web Conference, International Semantic Web Conference, Journal of Web Semantics, and Semantic Web Journal. The review highlights the tools, methods, types of data sources, ontologies, and publication methods, together with the challenges, limitations, and lessons learned in the knowledge graph creation processes.publishedVersio

Strategies for Managing Linked Enterprise Data

Data, information and knowledge become key assets of our 21st century economy. As a result, data and knowledge management become key tasks with regard to sustainable development and business success. Often, knowledge is not explicitly represented residing in the minds of people or scattered among a variety of data sources. Knowledge is inherently associated with semantics that conveys its meaning to a human or machine agent. The Linked Data concept facilitates the semantic integration of heterogeneous data sources. However, we still lack an effective knowledge integration strategy applicable to enterprise scenarios, which balances between large amounts of data stored in legacy information systems and data lakes as well as tailored domain specific ontologies that formally describe real-world concepts. In this thesis we investigate strategies for managing linked enterprise data analyzing how actionable knowledge can be derived from enterprise data leveraging knowledge graphs. Actionable knowledge provides valuable insights, supports decision makers with clear interpretable arguments, and keeps its inference processes explainable. The benefits of employing actionable knowledge and its coherent management strategy span from a holistic semantic representation layer of enterprise data, i.e., representing numerous data sources as one, consistent, and integrated knowledge source, to unified interaction mechanisms with other systems that are able to effectively and efficiently leverage such an actionable knowledge. Several challenges have to be addressed on different conceptual levels pursuing this goal, i.e., means for representing knowledge, semantic data integration of raw data sources and subsequent knowledge extraction, communication interfaces, and implementation. In order to tackle those challenges we present the concept of Enterprise Knowledge Graphs (EKGs), describe their characteristics and advantages compared to existing approaches. We study each challenge with regard to using EKGs and demonstrate their efficiency. In particular, EKGs are able to reduce the semantic data integration effort when processing large-scale heterogeneous datasets. Then, having built a consistent logical integration layer with heterogeneity behind the scenes, EKGs unify query processing and enable effective communication interfaces for other enterprise systems. The achieved results allow us to conclude that strategies for managing linked enterprise data based on EKGs exhibit reasonable performance, comply with enterprise requirements, and ensure integrated data and knowledge management throughout its life cycle

Large-Scale Storage and Reasoning for Semantic Data Using Swarms

Scalable, adaptive and robust approaches to store and analyze the massive amounts of data expected from Semantic Web applications are needed to bring the Web of Data to its full potential. The solution at hand is to distribute both data and requests onto multiple computers. Apart from storage, the annotation of data with machine-processable semantics is essential for realizing the vision of the Semantic Web. Reasoning on webscale data faces the same requirements as storage. Swarm-based approaches have been shown to produce near-optimal solutions for hard problems in a completely decentralized way. We propose a novel concept for reasoning within a fully distributed and self-organized storage system that is based on the collective behavior of swarm individuals and does not require any schema replication. We show the general feasibility and efficiency of our approach with a proof-of-concept experiment of storage and reasoning performance. Thereby, we positively answer the research question of whether swarm-based approaches are useful in creating a large-scale distributed storage and reasoning system. © 2012 IEEE

Creation and extension of ontologies for describing communications in the context of organizations

Thesis submitted to Faculdade de Ciências e Tecnologia of the Universidade Nova de Lisboa, in partial fulfillment of the requirements for the degree of Master in Computer ScienceThe use of ontologies is nowadays a sufficiently mature and solid field of work to be considered an efficient alternative in knowledge representation. With the crescent growth of the Semantic Web, it is expectable that this alternative tends to emerge even more in the near future. In the context of a collaboration established between FCT-UNL and the R&D department of a national software company, a new solution entitled ECC – Enterprise Communications Center was developed. This application provides a solution to manage the communications that enter, leave or are made within an organization, and includes intelligent classification of communications and conceptual search techniques in a communications repository. As specificity may be the key to obtain acceptable results with these processes, the use of ontologies becomes crucial to represent the existing knowledge about the specific domain of an organization. This work allowed us to guarantee a core set of ontologies that have the power of expressing the general context of the communications made in an organization, and of a methodology based upon a series of concrete steps that provides an effective capability of extending the ontologies to any business domain. By applying these steps, the minimization of the conceptualization and setup effort in new organizations and business domains is guaranteed. The adequacy of the core set of ontologies chosen and of the methodology specified is demonstrated in this thesis by its effective application to a real case-study, which allowed us to work with the different types of sources considered in the methodology and the activities that support its construction and evolution

Streaming the Web: Reasoning over dynamic data.

In the last few years a new research area, called stream reasoning, emerged to bridge the gap between reasoning and stream processing. While current reasoning approaches are designed to work on mainly static data, the Web is, on the other hand, extremely dynamic: information is frequently changed and updated, and new data is continuously generated from a huge number of sources, often at high rate. In other words, fresh information is constantly made available in the form of streams of new data and updates. Despite some promising investigations in the area, stream reasoning is still in its infancy, both from the perspective of models and theories development, and from the perspective of systems and tools design and implementation. The aim of this paper is threefold: (i) we identify the requirements coming from different application scenarios, and we isolate the problems they pose; (ii) we survey existing approaches and proposals in the area of stream reasoning, highlighting their strengths and limitations; (iii) we draw a research agenda to guide the future research and development of stream reasoning. In doing so, we also analyze related research fields to extract algorithms, models, techniques, and solutions that could be useful in the area of stream reasoning. © 2014 Elsevier B.V. All rights reserved

Statistical Extraction of Multilingual Natural Language Patterns for RDF Predicates: Algorithms and Applications

The Data Web has undergone a tremendous growth period. It currently consists of more then 3300 publicly available knowledge bases describing millions of resources from various domains, such as life sciences, government or geography, with over 89 billion facts. In the same way, the Document Web grew to the state where approximately 4.55 billion websites exist, 300 million photos are uploaded on Facebook as well as 3.5 billion Google searches are performed on average every day. However, there is a gap between the Document Web and the Data Web, since for example knowledge bases available on the Data Web are most commonly extracted from structured or semi-structured sources, but the majority of information available on the Web is contained in unstructured sources such as news articles, blog post, photos, forum discussions, etc. As a result, data on the Data Web not only misses a significant fragment of information but also suffers from a lack of actuality since typical extraction methods are time-consuming and can only be carried out periodically. Furthermore, provenance information is rarely taken into consideration and therefore gets lost in the transformation process. In addition, users are accustomed to entering keyword queries to satisfy their information needs. With the availability of machine-readable knowledge bases, lay users could be empowered to issue more specific questions and get more precise answers. In this thesis, we address the problem of Relation Extraction, one of the key challenges pertaining to closing the gap between the Document Web and the Data Web by four means. First, we present a distant supervision approach that allows finding multilingual natural language representations of formal relations already contained in the Data Web. We use these natural language representations to find sentences on the Document Web that contain unseen instances of this relation between two entities. Second, we address the problem of data actuality by presenting a real-time data stream RDF extraction framework and utilize this framework to extract RDF from RSS news feeds. Third, we present a novel fact validation algorithm, based on natural language representations, able to not only verify or falsify a given triple, but also to find trustworthy sources for it on the Web and estimating a time scope in which the triple holds true. The features used by this algorithm to determine if a website is indeed trustworthy are used as provenance information and therewith help to create metadata for facts in the Data Web. Finally, we present a question answering system that uses the natural language representations to map natural language question to formal SPARQL queries, allowing lay users to make use of the large amounts of data available on the Data Web to satisfy their information need