Globally Guided Progressive Fusion Network for 3D Pancreas Segmentation

Recently 3D volumetric organ segmentation attracts much research interest in medical image analysis due to its significance in computer aided diagnosis. This paper aims to address the pancreas segmentation task in 3D computed tomography volumes. We propose a novel end-to-end network, Globally Guided Progressive Fusion Network, as an effective and efficient solution to volumetric segmentation, which involves both global features and complicated 3D geometric information. A progressive fusion network is devised to extract 3D information from a moderate number of neighboring slices and predict a probability map for the segmentation of each slice. An independent branch for excavating global features from downsampled slices is further integrated into the network. Extensive experimental results demonstrate that our method achieves state-of-the-art performance on two pancreas datasets.Comment: MICCAI201

APAUNet: Axis Projection Attention UNet for Small Target in 3D Medical Segmentation

In 3D medical image segmentation, small targets segmentation is crucial for diagnosis but still faces challenges. In this paper, we propose the Axis Projection Attention UNet, named APAUNet, for 3D medical image segmentation, especially for small targets. Considering the large proportion of the background in the 3D feature space, we introduce a projection strategy to project the 3D features into three orthogonal 2D planes to capture the contextual attention from different views. In this way, we can filter out the redundant feature information and mitigate the loss of critical information for small lesions in 3D scans. Then we utilize a dimension hybridization strategy to fuse the 3D features with attention from different axes and merge them by a weighted summation to adaptively learn the importance of different perspectives. Finally, in the APA Decoder, we concatenate both high and low resolution features in the 2D projection process, thereby obtaining more precise multi-scale information, which is vital for small lesion segmentation. Quantitative and qualitative experimental results on two public datasets (BTCV and MSD) demonstrate that our proposed APAUNet outperforms the other methods. Concretely, our APAUNet achieves an average dice score of 87.84 on BTCV, 84.48 on MSD-Liver and 69.13 on MSD-Pancreas, and significantly surpass the previous SOTA methods on small targets.Comment: Accepted by ACCV202

Boosting Convolution with Efficient MLP-Permutation for Volumetric Medical Image Segmentation

Recently, the advent of vision Transformer (ViT) has brought substantial advancements in 3D dataset benchmarks, particularly in 3D volumetric medical image segmentation (Vol-MedSeg). Concurrently, multi-layer perceptron (MLP) network has regained popularity among researchers due to their comparable results to ViT, albeit with the exclusion of the resource-intensive self-attention module. In this work, we propose a novel permutable hybrid network for Vol-MedSeg, named PHNet, which capitalizes on the strengths of both convolution neural networks (CNNs) and MLP. PHNet addresses the intrinsic isotropy problem of 3D volumetric data by employing a combination of 2D and 3D CNNs to extract local features. Besides, we propose an efficient multi-layer permute perceptron (MLPP) module that captures long-range dependence while preserving positional information. This is achieved through an axis decomposition operation that permutes the input tensor along different axes, thereby enabling the separate encoding of the positional information. Furthermore, MLPP tackles the resolution sensitivity issue of MLP in Vol-MedSeg with a token segmentation operation, which divides the feature into smaller tokens and processes them individually. Extensive experimental results validate that PHNet outperforms the state-of-the-art methods with lower computational costs on the widely-used yet challenging COVID-19-20 and Synapse benchmarks. The ablation study also demonstrates the effectiveness of PHNet in harnessing the strengths of both CNNs and MLP