Classification of Ischemic Stroke with Convolutional Neural Network (CNN) approach on b-1000 Diffusion-Weighted (DW) MRI

When the blood flow to the arteries in brain is blocked, its known as Ischemic stroke or blockage stroke. Ischemic stroke can occur due to the formation of blood clots in other parts of the body. Plaque buildup in arteries, on the other hand, can cause blockages because if it ruptures, it can form blood clots. The b-1000 Diffusion Weighted (DW) Magnetic Resonance Imaging (MRI) image was used in a general examination to obtain an image of the part of the brain that had a stroke. In this study, classifications used several variations of layer convolution to obtain high accuracy and high computational consumption using b-1000 Diffusion Weighted (DW) MR in ischemic stroke types: acute, sub-acute and chronic. Ischemic stroke was classified using five variants of the Convolutional Neural Network (CNN) architectural design, i.e., CNN1–CNN5. The test results show that the CNN5 architectural design provides the best ischemic stroke classification compared to other architectural designs tested, with an accuracy of 99.861%, precision 99.862%, recall 99.861, and F1-score 99.861%

Brain Tumor Segmentation of MRI Images Using Processed Image Driven U-Net Architecture

Brain tumor segmentation seeks to separate healthy tissue from tumorous regions. This is an essential step in diagnosis and treatment planning to maximize the likelihood of successful treatment. Magnetic resonance imaging (MRI) provides detailed information about brain tumor anatomy, making it an important tool for effective diagnosis which is requisite to replace the existing manual detection system where patients rely on the skills and expertise of a human. In order to solve this problem, a brain tumor segmentation & detection system is proposed where experiments are tested on the collected BraTS 2018 dataset. This dataset contains four different MRI modalities for each patient as T1, T2, T1Gd, and FLAIR, and as an outcome, a segmented image and ground truth of tumor segmentation, i.e., class label, is provided. A fully automatic methodology to handle the task of segmentation of gliomas in pre-operative MRI scans is developed using a U-Net-based deep learning model. The first step is to transform input image data, which is further processed through various techniques—subset division, narrow object region, category brain slicing, watershed algorithm, and feature scaling was done. All these steps are implied before entering data into the U-Net Deep learning model. The U-Net Deep learning model is used to perform pixel label segmentation on the segment tumor region. The algorithm reached high-performance accuracy on the BraTS 2018 training, validation, as well as testing dataset. The proposed model achieved a dice coefficient of 0.9815, 0.9844, 0.9804, and 0.9954 on the testing dataset for sets HGG-1, HGG-2, HGG-3, and LGG-1, respectively

Random Forests : An Application To Tumour Classification

In this thesis, machine learning approaches, namely decision trees and random forests, are discussed. A mathematical foundation of decision trees is given. It is followed by discussion of the advantages and disadvantages of them. Further, the application of decision trees as a part of random forests is presented. A real life study of brain tumours is discussed regarding usage of random forests. The data consists of six different types of brain tumours, and the data is acquired by Raman spectroscopy. After the data has been curated, a random forest model is utilised to classify the class of the tumour. At the current point, the results seem optimistic, but require further experimentation

KOLAM : human computer interfaces fro visual analytics in big data imagery

In the present day, we are faced with a deluge of disparate and dynamic information from multiple heterogeneous sources. Among these are the big data imagery datasets that are rapidly being generated via mature acquisition methods in the geospatial, surveillance (specifically, Wide Area Motion Imagery or WAMI) and biomedical domains. The need to interactively visualize these imagery datasets by using multiple types of views (as needed) into the data is common to these domains. Furthermore, researchers in each domain have additional needs: users of WAMI datasets also need to interactively track objects of interest using algorithms of their choice, visualize the resulting object trajectories and interactively edit these results as needed. While software tools that fulfill each of these requirements individually are available and well-used at present, there is still a need for tools that can combine the desired aspects of visualization, human computer interaction (HCI), data analysis, data management, and (geo-)spatial and temporal data processing into a single flexible and extensible system. KOLAM is an open, cross-platform, interoperable, scalable and extensible framework for visualization and analysis that we have developed to fulfil the above needs. The novel contributions in this thesis are the following: 1) Spatio-temporal caching for animating both giga-pixel and Full Motion Video (FMV) imagery, 2) Human computer interfaces purposefully designed to accommodate big data visualization, 3) Human-in-the-loop interactive video object tracking - ground-truthing of moving objects in wide area imagery using algorithm assisted human-in-the-loop coupled tracking, 4) Coordinated visualization using stacked layers, side-by-side layers/video sub-windows and embedded imagery, 5) Efficient one-click manual tracking, editing and data management of trajectories, 6) Efficient labeling of image segmentation regions and passing these results to desired modules, 7) Visualization of image processing results generated by non-interactive operators using layers, 8) Extension of interactive imagery and trajectory visualization to multi-monitor wall display environments, 9) Geospatial applications: Providing rapid roam, zoom and hyper-jump spatial operations, interactive blending, colormap and histogram enhancement, spherical projection and terrain maps, 10) Biomedical applications: Visualization and target tracking of cell motility in time-lapse cell imagery, collecting ground-truth from experts on whole-slide imagery (WSI) for developing histopathology analytic algorithms and computer-aided diagnosis for cancer grading, and easy-to-use tissue annotation features.Includes bibliographical reference