Foundation, Implementation and Evaluation of the MorphoSaurus System: Subword Indexing, Lexical Learning and Word Sense Disambiguation for Medical Cross-Language Information Retrieval

Im medizinischen Alltag, zu welchem viel Dokumentations- und Recherchearbeit gehört, ist mittlerweile der überwiegende Teil textuell kodierter Information elektronisch verfügbar. Hiermit kommt der Entwicklung leistungsfähiger Methoden zur effizienten Recherche eine vorrangige Bedeutung zu. Bewertet man die Nützlichkeit gängiger Textretrievalsysteme aus dem Blickwinkel der medizinischen Fachsprache, dann mangelt es ihnen an morphologischer Funktionalität (Flexion, Derivation und Komposition), lexikalisch-semantischer Funktionalität und der Fähigkeit zu einer sprachübergreifenden Analyse großer Dokumentenbestände. In der vorliegenden Promotionsschrift werden die theoretischen Grundlagen des MorphoSaurus-Systems (ein Akronym für Morphem-Thesaurus) behandelt. Dessen methodischer Kern stellt ein um Morpheme der medizinischen Fach- und Laiensprache gruppierter Thesaurus dar, dessen Einträge mittels semantischer Relationen sprachübergreifend verknüpft sind. Darauf aufbauend wird ein Verfahren vorgestellt, welches (komplexe) Wörter in Morpheme segmentiert, die durch sprachunabhängige, konzeptklassenartige Symbole ersetzt werden. Die resultierende Repräsentation ist die Basis für das sprachübergreifende, morphemorientierte Textretrieval. Neben der Kerntechnologie wird eine Methode zur automatischen Akquise von Lexikoneinträgen vorgestellt, wodurch bestehende Morphemlexika um weitere Sprachen ergänzt werden. Die Berücksichtigung sprachübergreifender Phänomene führt im Anschluss zu einem neuartigen Verfahren zur Auflösung von semantischen Ambiguitäten. Die Leistungsfähigkeit des morphemorientierten Textretrievals wird im Rahmen umfangreicher, standardisierter Evaluationen empirisch getestet und gängigen Herangehensweisen gegenübergestellt

Doctor of Philosophy

dissertationDomain adaptation of natural language processing systems is challenging because it requires human expertise. While manual e ort is e ective in creating a high quality knowledge base, it is expensive and time consuming. Clinical text adds another layer of complexity to the task due to privacy and con dentiality restrictions that hinder the ability to share training corpora among di erent research groups. Semantic ambiguity is a major barrier for e ective and accurate concept recognition by natural language processing systems. In my research I propose an automated domain adaptation method that utilizes sublanguage semantic schema for all-word word sense disambiguation of clinical narrative. According to the sublanguage theory developed by Zellig Harris, domain-speci c language is characterized by a relatively small set of semantic classes that combine into a small number of sentence types. Previous research relied on manual analysis to create language models that could be used for more e ective natural language processing. Building on previous semantic type disambiguation research, I propose a method of resolving semantic ambiguity utilizing automatically acquired semantic type disambiguation rules applied on clinical text ambiguously mapped to a standard set of concepts. This research aims to provide an automatic method to acquire Sublanguage Semantic Schema (S3) and apply this model to disambiguate terms that map to more than one concept with di erent semantic types. The research is conducted using unmodi ed MetaMap version 2009, a concept recognition system provided by the National Library of Medicine, applied on a large set of clinical text. The project includes creating and comparing models, which are based on unambiguous concept mappings found in seventeen clinical note types. The e ectiveness of the nal application was validated through a manual review of a subset of processed clinical notes using recall, precision and F-score metrics

Domain adaptation and training data acquisition in wide-coverage word sense disambiguation and its application to information retrieval

Ph.DDOCTOR OF PHILOSOPH

Word sense disambiguation : Scaling up, domain adaptation and application to machine translation

Ph.DDOCTOR OF PHILOSOPH

A Survey on Semantic Processing Techniques

Semantic processing is a fundamental research domain in computational linguistics. In the era of powerful pre-trained language models and large language models, the advancement of research in this domain appears to be decelerating. However, the study of semantics is multi-dimensional in linguistics. The research depth and breadth of computational semantic processing can be largely improved with new technologies. In this survey, we analyzed five semantic processing tasks, e.g., word sense disambiguation, anaphora resolution, named entity recognition, concept extraction, and subjectivity detection. We study relevant theoretical research in these fields, advanced methods, and downstream applications. We connect the surveyed tasks with downstream applications because this may inspire future scholars to fuse these low-level semantic processing tasks with high-level natural language processing tasks. The review of theoretical research may also inspire new tasks and technologies in the semantic processing domain. Finally, we compare the different semantic processing techniques and summarize their technical trends, application trends, and future directions.Comment: Published at Information Fusion, Volume 101, 2024, 101988, ISSN 1566-2535. The equal contribution mark is missed in the published version due to the publication policies. Please contact Prof. Erik Cambria for detail

Satellite Workshop On Language, Artificial Intelligence and Computer Science for Natural Language Processing Applications (LAICS-NLP): Discovery of Meaning from Text

This paper proposes a novel method to disambiguate important words from a collection of documents. The hypothesis that underlies this approach is that there is a minimal set of senses that are significant in characterizing a context. We extend Yarowsky’s one sense per discourse [13] further to a collection of related documents rather than a single document. We perform distributed clustering on a set of features representing each of the top ten categories of documents in the Reuters-21578 dataset. Groups of terms that have a similar term distributional pattern across documents were identified. WordNet-based similarity measurement was then computed for terms within each cluster. An aggregation of the associations in WordNet that was employed to ascertain term similarity within clusters has provided a means of identifying clusters’ root senses

Knowledge base integration in biomedical natural language processing applications

With the progress of natural language processing in the biomedical field, the lack of annotated data due to regulations and expensive labor remains an issue. In this work, we study the potential of knowledge bases for biomedical language processing to compensate for the shortage of annotated data. Accordingly, we experiment with the integration of a rigorous biomedical knowledge base, the Unified Medical Language System, in three different biomedical natural language processing applications: text simplification, conversational agents for medication adherence, and automatic evaluation of medical students' chart notes. In the first task, we take as a use case simplifying medication instructions to enhance medication adherence among patients. Given the lack of an appropriate parallel corpus, the Unified Medical Language System provided simpler synonyms for an unsupervised system we devise, and we show a positive impact on comprehension through a human subjects study. As for the second task, we devise an unsupervised system to automatically evaluate chart notes written by medical students. The purpose of the system is to speed up the feedback process and enhance the educational experience. With the lack of training corpora, utilizing the Unified Medical Language System proved to enhance the accuracy of evaluation after integration into the baseline system. For the final task, the Unified Medical Language System was used to augment the training data of a conversational agent that educates patients on their medications. As part of the educational procedure, the agent needed to assess the comprehension of the patients by evaluating their answers to predefined questions. Starting with a small seed set of paraphrases of acceptable answers, the Unified Medical Language System was used to artificially augment the original small seed set via synonymy. Results did not show an increase in quality of system output after knowledge base integration due to the majority of errors resulting from mishandling of counts and negations. We later demonstrate the importance of a (lacking) entity linking system to perform optimal integration of biomedical knowledge bases, and we offer a first stride towards solving that problem, along with conclusions on proper training setup and processes for automatic collection of an annotated dataset for biomedical word sense disambiguation

Harnessing sense-level information for semantically augmented knowledge extraction

Nowadays, building accurate computational models for the semantics of language lies at the very core of Natural Language Processing and Artificial Intelligence. A first and foremost step in this respect consists in moving from word-based to sense-based approaches, in which operating explicitly at the level of word senses enables a model to produce more accurate and unambiguous results. At the same time, word senses create a bridge towards structured lexico-semantic resources, where the vast amount of available machine-readable information can help overcome the shortage of annotated data in many languages and domains of knowledge. This latter phenomenon, known as the knowledge acquisition bottlneck, is a crucial problem that hampers the development of large-scale, data-driven approaches for many Natural Language Processing tasks, especially when lexical semantics is directly involved. One of these tasks is Information Extraction, where an effective model has to cope with data sparsity, as well as with lexical ambiguity that can arise at the level of both arguments and relational phrases. Even in more recent Information Extraction approaches where semantics is implicitly modeled, these issues have not yet been addressed in their entirety. On the other hand, however, having access to explicit sense-level information is a very demanding task on its own, which can rarely be performed with high accuracy on a large scale. With this in mind, in ths thesis we will tackle a two-fold objective: our first focus will be on studying fully automatic approaches to obtain high-quality sense-level information from textual corpora; then, we will investigate in depth where and how such sense-level information has the potential to enhance the extraction of knowledge from open text. In the first part of this work, we will explore three different disambiguation scenar- ios (semi-structured text, parallel text, and definitional text) and devise automatic disambiguation strategies that are not only capable of scaling to different corpus sizes and different languages, but that actually take advantage of a multilingual and/or heterogeneous setting to improve and refine their performance. As a result, we will obtain three sense-annotated resources that, when tested experimentally with a baseline system in a series of downstream semantic tasks (i.e. Word Sense Disam- biguation, Entity Linking, Semantic Similarity), show very competitive performances on standard benchmarks against both manual and semi-automatic competitors. In the second part we will instead focus on Information Extraction, with an emphasis on Open Information Extraction (OIE), where issues like sparsity and lexical ambiguity are especially critical, and study how to exploit at best sense-level information within the extraction process. We will start by showing that enforcing a deeper semantic analysis in a definitional setting enables a full-fledged extraction pipeline to compete with state-of-the-art approaches based on much larger (but noisier) data. We will then demonstrate how working at the sense level at the end of an extraction pipeline is also beneficial: indeed, by leveraging sense-based techniques, very heterogeneous OIE-derived data can be aligned semantically, and unified with respect to a common sense inventory. Finally, we will briefly shift the focus to the more constrained setting of hypernym discovery, and study a sense-aware supervised framework for the task that is robust and effective, even when trained on heterogeneous OIE-derived hypernymic knowledge