Structure and topology of transcriptional regulatory networks and their applications in bio-inspired networking

Biological networks carry out vital functions necessary for sustenance despite environmental adversities. Transcriptional Regulatory Network (TRN) is one such biological network that is formed due to the interaction between proteins, called Transcription Factors (TFs), and segments of DNA, called genes. TRNs are known to exhibit functional robustness in the face of perturbation or mutation: a property that is proven to be a result of its underlying network topology. In this thesis, we first propose a three-tier topological characterization of TRN to analyze the interplay between the significant graph-theoretic properties of TRNs such as scale-free out-degree distribution, low graph density, small world property and the abundance of subgraphs called motifs. Specifically, we pinpoint the role of a certain three-node motif, called Feed Forward Loop (FFL) motif in topological robustness as well as information spread in TRNs. With the understanding of the TRN topology, we explore its potential use in design of fault-tolerant communication topologies. To this end, we first propose an edge rewiring mechanism that remedies the vulnerability of TRNs to the failure of well-connected nodes, called hubs, while preserving its other significant graph-theoretic properties. We apply the rewired TRN topologies in the design of wireless sensor networks that are less vulnerable to targeted node failure. Similarly, we apply the TRN topology to address the issues of robustness and energy-efficiency in the following networking paradigms: robust yet energy-efficient delay tolerant network for post disaster scenarios, energy-efficient data-collection framework for smart city applications and a data transfer framework deployed over a fog computing platform for collaborative sensing --Abstract, page iii

A Survey and Future Directions on Clustering: From WSNs to IoT and Modern Networking Paradigms

Many Internet of Things (IoT) networks are created as an overlay over traditional ad-hoc networks such as Zigbee. Moreover, IoT networks can resemble ad-hoc networks over networks that support device-to-device (D2D) communication, e.g., D2D-enabled cellular networks and WiFi-Direct. In these ad-hoc types of IoT networks, efficient topology management is a crucial requirement, and in particular in massive scale deployments. Traditionally, clustering has been recognized as a common approach for topology management in ad-hoc networks, e.g., in Wireless Sensor Networks (WSNs). Topology management in WSNs and ad-hoc IoT networks has many design commonalities as both need to transfer data to the destination hop by hop. Thus, WSN clustering techniques can presumably be applied for topology management in ad-hoc IoT networks. This requires a comprehensive study on WSN clustering techniques and investigating their applicability to ad-hoc IoT networks. In this article, we conduct a survey of this field based on the objectives for clustering, such as reducing energy consumption and load balancing, as well as the network properties relevant for efficient clustering in IoT, such as network heterogeneity and mobility. Beyond that, we investigate the advantages and challenges of clustering when IoT is integrated with modern computing and communication technologies such as Blockchain, Fog/Edge computing, and 5G. This survey provides useful insights into research on IoT clustering, allows broader understanding of its design challenges for IoT networks, and sheds light on its future applications in modern technologies integrated with IoT.acceptedVersio

Concepts and evolution of research in the field of wireless sensor networks

The field of Wireless Sensor Networks (WSNs) is experiencing a resurgence of interest and a continuous evolution in the scientific and industrial community. The use of this particular type of ad hoc network is becoming increasingly important in many contexts, regardless of geographical position and so, according to a set of possible application. WSNs offer interesting low cost and easily deployable solutions to perform a remote real time monitoring, target tracking and recognition of physical phenomenon. The uses of these sensors organized into a network continue to reveal a set of research questions according to particularities target applications. Despite difficulties introduced by sensor resources constraints, research contributions in this field are growing day by day. In this paper, we present a comprehensive review of most recent literature of WSNs and outline open research issues in this field

An overview on structural health monitoring: From the current state-of-the-art to new bio-inspired sensing paradigms

In the last decades, the field of structural health monitoring (SHM) has grown exponentially. Yet, several technical constraints persist, which are preventing full realization of its potential. To upgrade current state-of-the-art technologies, researchers have started to look at nature’s creations giving rise to a new field called ‘biomimetics’, which operates across the border between living and non-living systems. The highly optimised and time-tested performance of biological assemblies keeps on inspiring the development of bio-inspired artificial counterparts that can potentially outperform conventional systems. After a critical appraisal on the current status of SHM, this paper presents a review of selected works related to neural, cochlea and immune-inspired algorithms implemented in the field of SHM, including a brief survey of the advancements of bio-inspired sensor technology for the purpose of SHM. In parallel to this engineering progress, a more in-depth understanding of the most suitable biological patterns to be transferred into multimodal SHM systems is fundamental to foster new scientific breakthroughs. Hence, grounded in the dissection of three selected human biological systems, a framework for new bio-inspired sensing paradigms aimed at guiding the identification of tailored attributes to transplant from nature to SHM is outlined.info:eu-repo/semantics/acceptedVersio

A critical analysis of mobility management related issues of wireless sensor networks in cyber physical systems

Mobility management has been a long-standing issue in mobile wireless sensor networks and especially in the context of cyber physical systems; its implications are immense. This paper presents a critical analysis of the current approaches to mobility management by evaluating them against a set of criteria which are essentially inherent characteristics of such systems on which these approaches are expected to provide acceptable performance. We summarize these characteristics by using a quadruple set of metrics. Additionally, using this set we classify the various approaches to mobility management that are discussed in this paper. Finally, the paper concludes by reviewing the main findings and providing suggestions that will be helpful to guide future research efforts in the area