Stroke order normalization for improving recognition of online handwritten mathematical expressions

We present a technique based on stroke order normalization for improving recognition of online handwritten mathematical expressions (ME). The stroke order dependent system has less time complexity than the stroke order free system, but it must incorporate special grammar rules to cope with stroke order variations. The stroke order normalization technique solves this problem and also the problem of unexpected stroke order variations without increasing the time complexity of ME recognition. In order to normalize stroke order, the X-Y cut method is modified since its original form causes problems when structural components in ME overlap. First, vertically ordered strokes are located by detecting vertical symbols and their upper/lower components, which are treated as MEs and reordered recursively. Second, unordered strokes on the left side of the vertical symbols are reordered as horizontally ordered strokes. Third, the remaining strokes are reordered recursively. The horizontally ordered strokes are reordered from left to right, and the vertically ordered strokes are reordered from top to bottom. Finally, the proposed stroke order normalization is combined with the stroke order dependent ME recognition system. The evaluations on the CROHME 2014 database show that the ME recognition system incorporating the stroke order normalization outperforms all other systems that use only CROHME 2014 for training while the processing time is kept low

An integrated grammar-based approach for mathematical expression recognition

This is the author’s version of a work that was accepted for publication in Pattern Recognition. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. Changes may have been made to this work since it was submitted for publication. A definitive version was subsequently published in Pattern Recognition 51 (2016) 135–147. DOI 10.1016/j.patcog.2015.09.013.Automatic recognition of mathematical expressions is a challenging pattern recognition problem since there are many ambiguities at different levels. On the one hand, the recognition of the symbols of the mathematical expression. On the other hand, the detection of the two-dimensional structure that relates the symbols and represents the math expression. These problems are closely related since symbol recognition is influenced by the structure of the expression, while the structure strongly depends on the symbols that are recognized. For these reasons, we present an integrated approach that combines several stochastic sources of information and is able to globally determine the most likely expression. This way, symbol segmentation, symbol recognition and structural analysis are simultaneously optimized. In this paper we define the statistical framework of a model based on two-dimensional grammars and its associated parsing algorithm. Since the search space is too large, restrictions are introduced for making the search feasible. We have developed a system that implements this approach and we report results on the large public dataset of the CROHME international competition. This approach significantly outperforms other proposals and was awarded best system using only the training dataset of the competition. (C) 2015 Elsevier Ltd. All rights reserved.This work was partially supported by the Spanish MINECO under the STraDA research project (TIN2012-37475-C02-01) and the FPU Grant (AP2009-4363).Álvaro Muñoz, F.; Sánchez Peiró, JA.; Benedí Ruiz, JM. (2016). An integrated grammar-based approach for mathematical expression recognition. Pattern Recognition. 51:135-147. https://doi.org/10.1016/j.patcog.2015.09.013S1351475

Using bidirectional chart parsing for corpus analysis

Several experiments have been developed around a bidirectional island-driven chart parser. The system follows basically the approach of Stock, Satta and Corazza, and the experiments have been designed and performed with the purpose of examining several ways of improvement: basic strategy of the algorithm (pure island-driven versus mixed island-driven/bottom-up approaches), strategies for extension of the islands, strategies for selecting the initial islands, ways of scoring the possible extensions, etc. Both the system and the results obtained up to date are presented in this paper.Preprin

EvLog: Evolving Log Analyzer for Anomalous Logs Identification

Software logs record system activities, aiding maintainers in identifying the underlying causes for failures and enabling prompt mitigation actions. However, maintainers need to inspect a large volume of daily logs to identify the anomalous logs that reveal failure details for further diagnosis. Thus, how to automatically distinguish these anomalous logs from normal logs becomes a critical problem. Existing approaches alleviate the burden on software maintainers, but they are built upon an improper yet critical assumption: logging statements in the software remain unchanged. While software keeps evolving, our empirical study finds that evolving software brings three challenges: log parsing errors, evolving log events, and unstable log sequences. In this paper, we propose a novel unsupervised approach named Evolving Log analyzer (EvLog) to mitigate these challenges. We first build a multi-level representation extractor to process logs without parsing to prevent errors from the parser. The multi-level representations preserve the essential semantics of logs while leaving out insignificant changes in evolving events. EvLog then implements an anomaly discriminator with an attention mechanism to identify the anomalous logs and avoid the issue brought by the unstable sequence. EvLog has shown effectiveness in two real-world system evolution log datasets with an average F1 score of 0.955 and 0.847 in the intra-version setting and inter-version setting, respectively, which outperforms other state-of-the-art approaches by a wide margin. To our best knowledge, this is the first study on tackling anomalous logs over software evolution. We believe our work sheds new light on the impact of software evolution with the corresponding solutions for the log analysis community

Mathematical Expression Recognition based on Probabilistic Grammars

[EN] Mathematical notation is well-known and used all over the world. Humankind has evolved from simple methods representing countings to current well-defined math notation able to account for complex problems. Furthermore, mathematical expressions constitute a universal language in scientific fields, and many information resources containing mathematics have been created during the last decades. However, in order to efficiently access all that information, scientific documents have to be digitized or produced directly in electronic formats. Although most people is able to understand and produce mathematical information, introducing math expressions into electronic devices requires learning specific notations or using editors. Automatic recognition of mathematical expressions aims at filling this gap between the knowledge of a person and the input accepted by computers. This way, printed documents containing math expressions could be automatically digitized, and handwriting could be used for direct input of math notation into electronic devices. This thesis is devoted to develop an approach for mathematical expression recognition. In this document we propose an approach for recognizing any type of mathematical expression (printed or handwritten) based on probabilistic grammars. In order to do so, we develop the formal statistical framework such that derives several probability distributions. Along the document, we deal with the definition and estimation of all these probabilistic sources of information. Finally, we define the parsing algorithm that globally computes the most probable mathematical expression for a given input according to the statistical framework. An important point in this study is to provide objective performance evaluation and report results using public data and standard metrics. We inspected the problems of automatic evaluation in this field and looked for the best solutions. We also report several experiments using public databases and we participated in several international competitions. Furthermore, we have released most of the software developed in this thesis as open source. We also explore some of the applications of mathematical expression recognition. In addition to the direct applications of transcription and digitization, we report two important proposals. First, we developed mucaptcha, a method to tell humans and computers apart by means of math handwriting input, which represents a novel application of math expression recognition. Second, we tackled the problem of layout analysis of structured documents using the statistical framework developed in this thesis, because both are two-dimensional problems that can be modeled with probabilistic grammars. The approach developed in this thesis for mathematical expression recognition has obtained good results at different levels. It has produced several scientific publications in international conferences and journals, and has been awarded in international competitions.[ES] La notación matemática es bien conocida y se utiliza en todo el mundo. La humanidad ha evolucionado desde simples métodos para representar cuentas hasta la notación formal actual capaz de modelar problemas complejos. Además, las expresiones matemáticas constituyen un idioma universal en el mundo científico, y se han creado muchos recursos que contienen matemáticas durante las últimas décadas. Sin embargo, para acceder de forma eficiente a toda esa información, los documentos científicos han de ser digitalizados o producidos directamente en formatos electrónicos. Aunque la mayoría de personas es capaz de entender y producir información matemática, introducir expresiones matemáticas en dispositivos electrónicos requiere aprender notaciones especiales o usar editores. El reconocimiento automático de expresiones matemáticas tiene como objetivo llenar ese espacio existente entre el conocimiento de una persona y la entrada que aceptan los ordenadores. De este modo, documentos impresos que contienen fórmulas podrían digitalizarse automáticamente, y la escritura se podría utilizar para introducir directamente notación matemática en dispositivos electrónicos. Esta tesis está centrada en desarrollar un método para reconocer expresiones matemáticas. En este documento proponemos un método para reconocer cualquier tipo de fórmula (impresa o manuscrita) basado en gramáticas probabilísticas. Para ello, desarrollamos el marco estadístico formal que deriva varias distribuciones de probabilidad. A lo largo del documento, abordamos la definición y estimación de todas estas fuentes de información probabilística. Finalmente, definimos el algoritmo que, dada cierta entrada, calcula globalmente la expresión matemática más probable de acuerdo al marco estadístico. Un aspecto importante de este trabajo es proporcionar una evaluación objetiva de los resultados y presentarlos usando datos públicos y medidas estándar. Por ello, estudiamos los problemas de la evaluación automática en este campo y buscamos las mejores soluciones. Asimismo, presentamos diversos experimentos usando bases de datos públicas y hemos participado en varias competiciones internacionales. Además, hemos publicado como código abierto la mayoría del software desarrollado en esta tesis. También hemos explorado algunas de las aplicaciones del reconocimiento de expresiones matemáticas. Además de las aplicaciones directas de transcripción y digitalización, presentamos dos propuestas importantes. En primer lugar, desarrollamos mucaptcha, un método para discriminar entre humanos y ordenadores mediante la escritura de expresiones matemáticas, el cual representa una novedosa aplicación del reconocimiento de fórmulas. En segundo lugar, abordamos el problema de detectar y segmentar la estructura de documentos utilizando el marco estadístico formal desarrollado en esta tesis, dado que ambos son problemas bidimensionales que pueden modelarse con gramáticas probabilísticas. El método desarrollado en esta tesis para reconocer expresiones matemáticas ha obtenido buenos resultados a diferentes niveles. Este trabajo ha producido varias publicaciones en conferencias internacionales y revistas, y ha sido premiado en competiciones internacionales.[CA] La notació matemàtica és ben coneguda i s'utilitza a tot el món. La humanitat ha evolucionat des de simples mètodes per representar comptes fins a la notació formal actual capaç de modelar problemes complexos. A més, les expressions matemàtiques constitueixen un idioma universal al món científic, i s'han creat molts recursos que contenen matemàtiques durant les últimes dècades. No obstant això, per accedir de forma eficient a tota aquesta informació, els documents científics han de ser digitalitzats o produïts directament en formats electrònics. Encara que la majoria de persones és capaç d'entendre i produir informació matemàtica, introduir expressions matemàtiques en dispositius electrònics requereix aprendre notacions especials o usar editors. El reconeixement automàtic d'expressions matemàtiques té per objectiu omplir aquest espai existent entre el coneixement d'una persona i l'entrada que accepten els ordinadors. D'aquesta manera, documents impresos que contenen fórmules podrien digitalitzar-se automàticament, i l'escriptura es podria utilitzar per introduir directament notació matemàtica en dispositius electrònics. Aquesta tesi està centrada en desenvolupar un mètode per reconèixer expressions matemàtiques. En aquest document proposem un mètode per reconèixer qualsevol tipus de fórmula (impresa o manuscrita) basat en gramàtiques probabilístiques. Amb aquesta finalitat, desenvolupem el marc estadístic formal que deriva diverses distribucions de probabilitat. Al llarg del document, abordem la definició i estimació de totes aquestes fonts d'informació probabilística. Finalment, definim l'algorisme que, donada certa entrada, calcula globalment l'expressió matemàtica més probable d'acord al marc estadístic. Un aspecte important d'aquest treball és proporcionar una avaluació objectiva dels resultats i presentar-los usant dades públiques i mesures estàndard. Per això, estudiem els problemes de l'avaluació automàtica en aquest camp i busquem les millors solucions. Així mateix, presentem diversos experiments usant bases de dades públiques i hem participat en diverses competicions internacionals. A més, hem publicat com a codi obert la majoria del software desenvolupat en aquesta tesi. També hem explorat algunes de les aplicacions del reconeixement d'expressions matemàtiques. A més de les aplicacions directes de transcripció i digitalització, presentem dues propostes importants. En primer lloc, desenvolupem mucaptcha, un mètode per discriminar entre humans i ordinadors mitjançant l'escriptura d'expressions matemàtiques, el qual representa una nova aplicació del reconeixement de fórmules. En segon lloc, abordem el problema de detectar i segmentar l'estructura de documents utilitzant el marc estadístic formal desenvolupat en aquesta tesi, donat que ambdós són problemes bidimensionals que poden modelar-se amb gramàtiques probabilístiques. El mètode desenvolupat en aquesta tesi per reconèixer expressions matemàtiques ha obtingut bons resultats a diferents nivells. Aquest treball ha produït diverses publicacions en conferències internacionals i revistes, i ha sigut premiat en competicions internacionals.Álvaro Muñoz, F. (2015). Mathematical Expression Recognition based on Probabilistic Grammars [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/51665TESI

Measuring Short Text Semantic Similarity with Deep Learning Models

Natural language processing (NLP) is the ability of a computer program to understand human language as it is spoken, which is a subfield of artificial intelligence (AI). The development of NLP applications is challenging because computers traditionally require humans to speak" to them in a programming language that is precise, unambiguous and highly structured, or through a limited number of clearly enunciated voice commands. We study the use of deep learning models, the state-of-the-art artificial intelligence (AI) method, for the problem of measuring short text semantic similarity in NLP area. In particular, we propose a novel deep neural network architecture to identify semantic similarity for pairs of question sentence. In the proposed network, multiple channels of knowledge for pairs of question text can be utilized to improve the representation of text. Then a dense layer is used to learn a classifier for classifying duplicated question pairs. Through extensive experiments on the Quora test collection, our proposed approach has shown remarkable and significant improvement over strong baselines, which verifies the effectiveness of the deep models as well as the proposed deep multi-channel framework

CODEBERT-NT: code naturalness via CodeBERT

Much of recent software-engineering research has investigated the naturalness of code, the fact that code, in small code snippets, is repetitive and can be predicted using statistical language models like n-gram. Although powerful, training such models on large code corpus can be tedious, time consuming and sensitive to code patterns (and practices) encountered during training. Consequently, these models are often trained on a small corpus and thus only estimate the language naturalness relative to a specific style of programming or type of project. To overcome these issues, we investigate the use of pre-trained generative language models to infer code naturalness. Pre-trained models are often built on big data, are easy to use in an out-of-the-box way and include powerful learning associations mechanisms. Our key idea is to quantify code naturalness through its predictability, by using state-of-the-art generative pre-trained language models. Thus, we suggest to infer naturalness by masking (omitting) code tokens, one at a time, of code-sequences, and checking the models’ability to predict them. We explore three different predictability metrics; a) measuring the number of exact matches of the predictions, b) computing the embedding similarity between the original and predicted code, i.e., similarity at the vector space, and c) computing the confidence of the model when doing the token completion task regardless of the outcome. We implement this workflow, named CODEBERT-NT, and evaluate its capability to prioritize buggy lines over non-buggy ones when ranking code based on its naturalness. Our results, on 2,510 buggy versions of 40 projects from the SmartShark dataset, show that CODEBERT-NT outperforms both, random-uniform and complexity-based ranking techniques, and yields comparable results to the n-gram models

Contributions to information extraction for spanish written biomedical text

285 p.Healthcare practice and clinical research produce vast amounts of digitised, unstructured data in multiple languages that are currently underexploited, despite their potential applications in improving healthcare experiences, supporting trainee education, or enabling biomedical research, for example. To automatically transform those contents into relevant, structured information, advanced Natural Language Processing (NLP) mechanisms are required. In NLP, this task is known as Information Extraction. Our work takes place within this growing field of clinical NLP for the Spanish language, as we tackle three distinct problems. First, we compare several supervised machine learning approaches to the problem of sensitive data detection and classification. Specifically, we study the different approaches and their transferability in two corpora, one synthetic and the other authentic. Second, we present and evaluate UMLSmapper, a knowledge-intensive system for biomedical term identification based on the UMLS Metathesaurus. This system recognises and codifies terms without relying on annotated data nor external Named Entity Recognition tools. Although technically naive, it performs on par with more evolved systems, and does not exhibit a considerable deviation from other approaches that rely on oracle terms. Finally, we present and exploit a new corpus of real health records manually annotated with negation and uncertainty information: NUBes. This corpus is the basis for two sets of experiments, one on cue andscope detection, and the other on assertion classification. Throughout the thesis, we apply and compare techniques of varying levels of sophistication and novelty, which reflects the rapid advancement of the field

Highly efficient low-level feature extraction for video representation and retrieval.

PhDWitnessing the omnipresence of digital video media, the research community has raised the question of its meaningful use and management. Stored in immense multimedia databases, digital videos need to be retrieved and structured in an intelligent way, relying on the content and the rich semantics involved. Current Content Based Video Indexing and Retrieval systems face the problem of the semantic gap between the simplicity of the available visual features and the richness of user semantics. This work focuses on the issues of efficiency and scalability in video indexing and retrieval to facilitate a video representation model capable of semantic annotation. A highly efficient algorithm for temporal analysis and key-frame extraction is developed. It is based on the prediction information extracted directly from the compressed domain features and the robust scalable analysis in the temporal domain. Furthermore, a hierarchical quantisation of the colour features in the descriptor space is presented. Derived from the extracted set of low-level features, a video representation model that enables semantic annotation and contextual genre classification is designed. Results demonstrate the efficiency and robustness of the temporal analysis algorithm that runs in real time maintaining the high precision and recall of the detection task. Adaptive key-frame extraction and summarisation achieve a good overview of the visual content, while the colour quantisation algorithm efficiently creates hierarchical set of descriptors. Finally, the video representation model, supported by the genre classification algorithm, achieves excellent results in an automatic annotation system by linking the video clips with a limited lexicon of related keywords