On Benchmarking Embedded Linux Flash File Systems

Due to its attractive characteristics in terms of performance, weight and power consumption, NAND flash memory became the main non volatile memory (NVM) in embedded systems. Those NVMs also present some specific characteristics/constraints: good but asymmetric I/O performance, limited lifetime, write/erase granularity asymmetry, etc. Those peculiarities are either managed in hardware for flash disks (SSDs, SD cards, USB sticks, etc.) or in software for raw embedded flash chips. When managed in software, flash algorithms and structures are implemented in a specific flash file system (FFS). In this paper, we present a performance study of the most widely used FFSs in embedded Linux: JFFS2, UBIFS,and YAFFS. We show some very particular behaviors and large performance disparities for tested FFS operations such as mounting, copying, and searching file trees, compression, etc.Comment: Embed With Linux, Lorient : France (2012

Fast, Small and Exact: Infinite-order Language Modelling with Compressed Suffix Trees

Efficient methods for storing and querying are critical for scaling high-order n-gram language models to large corpora. We propose a language model based on compressed suffix trees, a representation that is highly compact and can be easily held in memory, while supporting queries needed in computing language model probabilities on-the-fly. We present several optimisations which improve query runtimes up to 2500x, despite only incurring a modest increase in construction time and memory usage. For large corpora and high Markov orders, our method is highly competitive with the state-of-the-art KenLM package. It imposes much lower memory requirements, often by orders of magnitude, and has runtimes that are either similar (for training) or comparable (for querying).Comment: 14 pages in Transactions of the Association for Computational Linguistics (TACL) 201

Entropy-scaling search of massive biological data

Many datasets exhibit a well-defined structure that can be exploited to design faster search tools, but it is not always clear when such acceleration is possible. Here, we introduce a framework for similarity search based on characterizing a dataset's entropy and fractal dimension. We prove that searching scales in time with metric entropy (number of covering hyperspheres), if the fractal dimension of the dataset is low, and scales in space with the sum of metric entropy and information-theoretic entropy (randomness of the data). Using these ideas, we present accelerated versions of standard tools, with no loss in specificity and little loss in sensitivity, for use in three domains---high-throughput drug screening (Ammolite, 150x speedup), metagenomics (MICA, 3.5x speedup of DIAMOND [3,700x BLASTX]), and protein structure search (esFragBag, 10x speedup of FragBag). Our framework can be used to achieve "compressive omics," and the general theory can be readily applied to data science problems outside of biology.Comment: Including supplement: 41 pages, 6 figures, 4 tables, 1 bo

Energy-efficient acceleration of MPEG-4 compression tools

We propose novel hardware accelerator architectures for the most computationally demanding algorithms of the MPEG-4 video compression standard-motion estimation, binary motion estimation (for shape coding), and the forward/inverse discrete cosine transforms (incorporating shape adaptive modes). These accelerators have been designed using general low-energy design philosophies at the algorithmic/architectural abstraction levels. The themes of these philosophies are avoiding waste and trading area/performance for power and energy gains. Each core has been synthesised targeting TSMC 0.09 μm TCBN90LP technology, and the experimental results presented in this paper show that the proposed cores improve upon the prior art

Memory-Efficient Global Refinement of Decision-Tree Ensembles and its Application to Face Alignment

Ren et al. recently introduced a method for aggregating multiple decision trees into a strong predictor by interpreting a path taken by a sample down each tree as a binary vector and performing linear regression on top of these vectors stacked together. They provided experimental evidence that the method offers advantages over the usual approaches for combining decision trees (random forests and boosting). The method truly shines when the regression target is a large vector with correlated dimensions, such as a 2D face shape represented with the positions of several facial landmarks. However, we argue that their basic method is not applicable in many practical scenarios due to large memory requirements. This paper shows how this issue can be solved through the use of quantization and architectural changes of the predictor that maps decision tree-derived encodings to the desired output.Comment: BMVC Newcastle 201