16,274 research outputs found
KERT: Automatic Extraction and Ranking of Topical Keyphrases from Content-Representative Document Titles
We introduce KERT (Keyphrase Extraction and Ranking by Topic), a framework
for topical keyphrase generation and ranking. By shifting from the
unigram-centric traditional methods of unsupervised keyphrase extraction to a
phrase-centric approach, we are able to directly compare and rank phrases of
different lengths. We construct a topical keyphrase ranking function which
implements the four criteria that represent high quality topical keyphrases
(coverage, purity, phraseness, and completeness). The effectiveness of our
approach is demonstrated on two collections of content-representative titles in
the domains of Computer Science and Physics.Comment: 9 page
Feature and Variable Selection in Classification
The amount of information in the form of features and variables avail- able
to machine learning algorithms is ever increasing. This can lead to classifiers
that are prone to overfitting in high dimensions, high di- mensional models do
not lend themselves to interpretable results, and the CPU and memory resources
necessary to run on high-dimensional datasets severly limit the applications of
the approaches. Variable and feature selection aim to remedy this by finding a
subset of features that in some way captures the information provided best. In
this paper we present the general methodology and highlight some specific
approaches.Comment: Part of master seminar in document analysis held by Marcus
Eichenberger-Liwick
Predicting Pancreatic Cancer Using Support Vector Machine
This report presents an approach to predict pancreatic cancer using Support Vector Machine Classification algorithm. The research objective of this project it to predict pancreatic cancer on just genomic, just clinical and combination of genomic and clinical data. We have used real genomic data having 22,763 samples and 154 features per sample. We have also created Synthetic Clinical data having 400 samples and 7 features per sample in order to predict accuracy of just clinical data. To validate the hypothesis, we have combined synthetic clinical data with subset of features from real genomic data. In our results, we observed that prediction accuracy, precision, recall with just genomic data is 80.77%, 20%, 4%. Prediction accuracy, precision, recall with just synthetic clinical data is 93.33%, 95%, 30%. While prediction accuracy, precision, recall for combination of real genomic and synthetic clinical data is 90.83%, 10%, 5%. The combination of real genomic and synthetic clinical data decreased the accuracy since the genomic data is weakly correlated. Thus we conclude that the combination of genomic and clinical data does not improve pancreatic cancer prediction accuracy. A dataset with more significant genomic features might help to predict pancreatic cancer more accurately
Definition of valid proteomic biomarkers: a bayesian solution
Clinical proteomics is suffering from high hopes generated by reports on apparent biomarkers, most of which could not be later substantiated via validation. This has brought into focus the need for improved methods of finding a panel of clearly defined biomarkers. To examine this problem, urinary proteome data was collected from healthy adult males and females, and analysed to find biomarkers that differentiated between genders. We believe that models that incorporate sparsity in terms of variables are desirable for biomarker selection, as proteomics data typically contains a huge number of variables (peptides) and few samples making the selection process potentially unstable. This suggests the application of a two-level hierarchical Bayesian probit regression model for variable selection which assumes a prior that favours sparseness. The classification performance of this method is shown to improve that of the Probabilistic K-Nearest Neighbour model
Digging into acceptor splice site prediction : an iterative feature selection approach
Feature selection techniques are often used to reduce data dimensionality, increase classification performance, and gain insight into the processes that generated the data. In this paper, we describe an iterative procedure of feature selection and feature construction steps, improving the classification of acceptor splice sites, an important subtask of gene prediction.
We show that acceptor prediction can benefit from feature selection, and describe how feature selection techniques can be used to gain new insights in the classification of acceptor sites. This is illustrated by the identification of a new, biologically motivated feature: the AG-scanning feature.
The results described in this paper contribute both to the domain of gene prediction, and to research in feature selection techniques, describing a new wrapper based feature weighting method that aids in knowledge discovery when dealing with complex datasets
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