16,727 research outputs found
Location Dependent Dirichlet Processes
Dirichlet processes (DP) are widely applied in Bayesian nonparametric
modeling. However, in their basic form they do not directly integrate
dependency information among data arising from space and time. In this paper,
we propose location dependent Dirichlet processes (LDDP) which incorporate
nonparametric Gaussian processes in the DP modeling framework to model such
dependencies. We develop the LDDP in the context of mixture modeling, and
develop a mean field variational inference algorithm for this mixture model.
The effectiveness of the proposed modeling framework is shown on an image
segmentation task
A Bayesian alternative to mutual information for the hierarchical clustering of dependent random variables
The use of mutual information as a similarity measure in agglomerative
hierarchical clustering (AHC) raises an important issue: some correction needs
to be applied for the dimensionality of variables. In this work, we formulate
the decision of merging dependent multivariate normal variables in an AHC
procedure as a Bayesian model comparison. We found that the Bayesian
formulation naturally shrinks the empirical covariance matrix towards a matrix
set a priori (e.g., the identity), provides an automated stopping rule, and
corrects for dimensionality using a term that scales up the measure as a
function of the dimensionality of the variables. Also, the resulting log Bayes
factor is asymptotically proportional to the plug-in estimate of mutual
information, with an additive correction for dimensionality in agreement with
the Bayesian information criterion. We investigated the behavior of these
Bayesian alternatives (in exact and asymptotic forms) to mutual information on
simulated and real data. An encouraging result was first derived on
simulations: the hierarchical clustering based on the log Bayes factor
outperformed off-the-shelf clustering techniques as well as raw and normalized
mutual information in terms of classification accuracy. On a toy example, we
found that the Bayesian approaches led to results that were similar to those of
mutual information clustering techniques, with the advantage of an automated
thresholding. On real functional magnetic resonance imaging (fMRI) datasets
measuring brain activity, it identified clusters consistent with the
established outcome of standard procedures. On this application, normalized
mutual information had a highly atypical behavior, in the sense that it
systematically favored very large clusters. These initial experiments suggest
that the proposed Bayesian alternatives to mutual information are a useful new
tool for hierarchical clustering
A Survey of Adaptive Resonance Theory Neural Network Models for Engineering Applications
This survey samples from the ever-growing family of adaptive resonance theory
(ART) neural network models used to perform the three primary machine learning
modalities, namely, unsupervised, supervised and reinforcement learning. It
comprises a representative list from classic to modern ART models, thereby
painting a general picture of the architectures developed by researchers over
the past 30 years. The learning dynamics of these ART models are briefly
described, and their distinctive characteristics such as code representation,
long-term memory and corresponding geometric interpretation are discussed.
Useful engineering properties of ART (speed, configurability, explainability,
parallelization and hardware implementation) are examined along with current
challenges. Finally, a compilation of online software libraries is provided. It
is expected that this overview will be helpful to new and seasoned ART
researchers
Bayesian hierarchical clustering for studying cancer gene expression data with unknown statistics
Clustering analysis is an important tool in studying gene expression data. The Bayesian hierarchical clustering (BHC) algorithm can automatically infer the number of clusters and uses Bayesian model selection to improve clustering quality. In this paper, we present an extension of the BHC algorithm. Our Gaussian BHC (GBHC) algorithm represents data as a mixture of Gaussian distributions. It uses normal-gamma distribution as a conjugate prior on the mean and precision of each of the Gaussian components. We tested GBHC over 11 cancer and 3 synthetic datasets. The results on cancer datasets show that in sample clustering, GBHC on average produces a clustering partition that is more concordant with the ground truth than those obtained from other commonly used algorithms. Furthermore, GBHC frequently infers the number of clusters that is often close to the ground truth. In gene clustering, GBHC also produces a clustering partition that is more biologically plausible than several other state-of-the-art methods. This suggests GBHC as an alternative tool for studying gene expression data. The implementation of GBHC is available at https://sites.
google.com/site/gaussianbhc
- …