Automated Fovea Detection Based on Unsupervised Retinal Vessel Segmentation Method

The Computer Assisted Diagnosis systems could save workloads and give objective diagnostic to ophthalmologists. At first level of automated screening of systems feature extraction is the fundamental step. One of these retinal features is the fovea. The fovea is a small fossa on the fundus, which is represented by a deep-red or red-brown color in color retinal images. By observing retinal images, it appears that the main vessels diverge from the optic nerve head and follow a specific course that can be geometrically modeled as a parabola, with a common vertex inside the optic nerve head and the fovea located along the apex of this parabola curve. Therefore, based on this assumption, the main retinal blood vessels are segmented and fitted to a parabolic model. With respect to the core vascular structure, we can thus detect fovea in the fundus images. For the vessel segmentation, our algorithm addresses the image locally where homogeneity of features is more likely to occur. The algorithm is composed of 4 steps: multi-overlapping windows, local Radon transform, vessel validation, and parabolic fitting. In order to extract blood vessels, sub-vessels should be extracted in local windows. The high contrast between blood vessels and image background in the images cause the vessels to be associated with peaks in the Radon space. The largest vessels, using a high threshold of the Radon transform, determines the main course or overall configuration of the blood vessels which when fitted to a parabola, leads to the future localization of the fovea. In effect, with an accurate fit, the fovea normally lies along the slope joining the vertex and the focus. The darkest region along this line is the indicative of the fovea. To evaluate our method, we used 220 fundus images from a rural database (MUMS-DB) and one public one (DRIVE). The results show that, among 20 images of the first public database (DRIVE) we detected fovea in 85% of them. Also for the MUMS-DB database among 200 images we detect fovea correctly in 83% on them

Fast Retinal Vessel Detection and Measurement Using Wavelets and Edge Location Refinement

The relationship between changes in retinal vessel morphology and the onset and progression of diseases such as diabetes, hypertension and retinopathy of prematurity (ROP) has been the subject of several large scale clinical studies. However, the difficulty of quantifying changes in retinal vessels in a sufficiently fast, accurate and repeatable manner has restricted the application of the insights gleaned from these studies to clinical practice. This paper presents a novel algorithm for the efficient detection and measurement of retinal vessels, which is general enough that it can be applied to both low and high resolution fundus photographs and fluorescein angiograms upon the adjustment of only a few intuitive parameters. Firstly, we describe the simple vessel segmentation strategy, formulated in the language of wavelets, that is used for fast vessel detection. When validated using a publicly available database of retinal images, this segmentation achieves a true positive rate of 70.27%, false positive rate of 2.83%, and accuracy score of 0.9371. Vessel edges are then more precisely localised using image profiles computed perpendicularly across a spline fit of each detected vessel centreline, so that both local and global changes in vessel diameter can be readily quantified. Using a second image database, we show that the diameters output by our algorithm display good agreement with the manual measurements made by three independent observers. We conclude that the improved speed and generality offered by our algorithm are achieved without sacrificing accuracy. The algorithm is implemented in MATLAB along with a graphical user interface, and we have made the source code freely available

Detection of retinal blood vessels from ophthalmoscope images using morphological approach

Accurate segmentation of retinal blood vessels is an essential task for diagnosis of various pathological disorders. In this paper, a novel method has been introduced for segmenting retinal blood vessels which involves pre-processing, segmentation and post-processing. The pre-processing stage enhanced the image using contrast limited adaptive histogram equalization and 2D Gabor wavelet. The enhanced image is segmented using geodesic operators and a final segmentation output is obtained by applying a post-processing stage that involves hole filling and removal of isolated pixels. The performance of the proposed method is evaluated on the publicly available Digital retinal images for vessel extraction (DRIVE) and High-resolution fundus (HRF) databases using five different measurements and experimental analysis shows that the proposed method reach an average accuracy of 0.9541 on DRIVE database and 0.9568, 0.9478 and 0.9613 on HRF database with healthy, diabetic retinopathy (DR) and glaucomatous images respectively

Enhanced visualization of the retinal vasculature using depth information in OCT

This version of the article has been accepted for publication, after peer review and is subject to Springer Nature’s AM terms of use, but is not the Version of Record and does not reflect post-acceptance improvements, or any corrections. The Version of Record is available online at: https://doi.org/10.1007/s11517-017-1660-8[Abstract]: Retinal vessel tree extraction is a crucial step for analyzing the microcirculation, a frequently needed process in the study of relevant diseases. To date, this has normally been done by using 2D image capture paradigms, offering a restricted visualization of the real layout of the retinal vasculature. In this work, we propose a new approach that automatically segments and reconstructs the 3D retinal vessel tree by combining near-infrared reflectance retinography information with Optical Coherence Tomography (OCT) sections. Our proposal identifies the vessels, estimates their calibers, and obtains the depth at all the positions of the entire vessel tree, thereby enabling the reconstruction of the 3D layout of the complete arteriovenous tree for subsequent analysis. The method was tested using 991 OCT images combined with their corresponding near-infrared reflectance retinography. The different stages of the methodology were validated using the opinion of an expert as a reference. The tests offered accurate results, showing coherent reconstructions of the 3D vasculature that can be analyzed in the diagnosis of relevant diseases affecting the retinal microcirculation, such as hypertension or diabetes, among others.This work is supported by the Instituto de Salud Carlos III, Government of Spain and FEDER funds of the European Union through the PI14/02161 and the DTS15/00153 research projects and by the Ministerio de Economía y Competitividad, Government of Spain through the DPI2015-69948-R research project. Also, this work has received financial support from the European Union (European Regional Development Fund - ERDF) and the Xunta de Galicia, Centro singular de investigación de Galicia accreditation 2016-2019, Ref. ED431G/01; and Grupos de Referencia Competitiva, Ref. ED431C 2016-047.Xunta de Galicia; ED431G/01Xunta de Galicia; ED431C 2016-04

Measurement of retinal blood vessel caliber using two different segmentation methods

In this paper, we explore two different retinal vessel segmentationmethods for the reliable estimation of vessels caliber in retinal images inorder to assess vascular changes as an aid for the diagnosis of the ocularmanifestations of several systemic diseases, namely diabetic retinopathyand hypertensive retinopathy

A Rule Based Segmentation Approaches to Extract Retinal Blood Vessels in Fundus Image

The physiological structures of the retinal blood vessel are one of the key features that visible in the retinal images and contain the information associate with the anatomical abnormalities. It is accepted all over the world to judge the cardiovascular and retinal disease. To avoid the risk of visual impairment, appropriate vessel segmentation is mandatory. Here has proposed a segmentation algorithm that efficiently extracts the blood vessels from the retinal fundus image. The proposed segmentation algorithm is performed Lab and Principle Component (PC) based gray level conversion, Contrast Limited Adaptive Histogram Equalization (CLAHE), morphological operations, Local Property-Based Pixel Correction (LPBPC). For appropriate detection proposed vessels correction algorithm LPBPC that check the feature of the vessels and remove the wrong vessel detection. To measure the appropriateness of the proposed algorithm, the experimental results are compared with the corresponding ground truth images. The experimental results have shown that the proposed blood vessel algorithm is more accurate than the existing algorithms

Evaluation of Publicly Available Blood Vessel Segmentation Methods for Retinal Images

Retinal blood vessel structure is an important indicator of disorders related to diseases, which has motivated the development of various image segmentation methods for the blood vessels. In this study, two supervised and two unsupervised retinal blood vessel segmentation methods are quantitatively compared by using five publicly available databases with the ground truth for the vessels. The parameters of each method were optimized for each database with the motivation to achieve good segmentation performance for the comparison and study the importance of proper selection of parameter values. The results show that parameter optimization does not significantly improve the segmentation performance of the methods when the original data is used. However, the methods’ performance for new data differs significantly. Based on the comparison, Soares method as a supervised approach provided the highest overall accuracy and, thus, the best generalisability. Bankhead and Nguyen methods’ performance were close to each other: Bankhead performed better with ARIADB and STARE, whereas Nguyen was better with DRIVE. Sofka method is available only as an executable and its performance matched the others only with ARIADB

Retinal vessel segmentation using textons

Segmenting vessels from retinal images, like segmentation in many other medical image domains, is a challenging task, as there is no unified way that can be adopted to extract the vessels accurately. However, it is the most critical stage in automatic assessment of various forms of diseases (e.g. Glaucoma, Age-related macular degeneration, diabetic retinopathy and cardiovascular diseases etc.). Our research aims to investigate retinal image segmentation approaches based on textons as they provide a compact description of texture that can be learnt from a training set. This thesis presents a brief review of those diseases and also includes their current situations, future trends and techniques used for their automatic diagnosis in routine clinical applications. The importance of retinal vessel segmentation is particularly emphasized in such applications. An extensive review of previous work on retinal vessel segmentation and salient texture analysis methods is presented. Five automatic retinal vessel segmentation methods are proposed in this thesis. The first method focuses on addressing the problem of removing pathological anomalies (Drusen, exudates) for retinal vessel segmentation, which have been identified by other researchers as a problem and a common source of error. The results show that the modified method shows some improvement compared to a previously published method. The second novel supervised segmentation method employs textons. We propose a new filter bank (MR11) that includes bar detectors for vascular feature extraction and other kernels to detect edges and photometric variations in the image. The k-means clustering algorithm is adopted for texton generation based on the vessel and non-vessel elements which are identified by ground truth. The third improved supervised method is developed based on the second one, in which textons are generated by k-means clustering and texton maps representing vessels are derived by back projecting pixel clusters onto hand labelled ground truth. A further step is implemented to ensure that the best combinations of textons are represented in the map and subsequently used to identify vessels in the test set. The experimental results on two benchmark datasets show that our proposed method performs well compared to other published work and the results of human experts. A further test of our system on an independent set of optical fundus images verified its consistent performance. The statistical analysis on experimental results also reveals that it is possible to train unified textons for retinal vessel segmentation. In the fourth method a novel scheme using Gabor filter bank for vessel feature extraction is proposed. The ii method is inspired by the human visual system. Machine learning is used to optimize the Gabor filter parameters. The experimental results demonstrate that our method significantly enhances the true positive rate while maintaining a level of specificity that is comparable with other approaches. Finally, we proposed a new unsupervised texton based retinal vessel segmentation method using derivative of SIFT and multi-scale Gabor filers. The lack of sufficient quantities of hand labelled ground truth and the high level of variability in ground truth labels amongst experts provides the motivation for this approach. The evaluation results reveal that our unsupervised segmentation method is comparable with the best other supervised methods and other best state of the art methods