Bayesian gravitation based classification for hyperspectral images.

Integration of spectral and spatial information is extremely important for the classification of high-resolution hyperspectral images (HSIs). Gravitation describes interaction among celestial bodies which can be applied to measure similarity between data for image classification. However, gravitation is hard to combine with spatial information and rarely been applied in HSI classification. This paper proposes a Bayesian Gravitation based Classification (BGC) to integrate the spectral and spatial information of local neighbors and training samples. In the BGC method, each testing pixel is first assumed as a massive object with unit volume and a particular density, where the density is taken as the data mass in BGC. Specifically, the data mass is formulated as an exponential function of the spectral distribution of its neighbors and the spatial prior distribution of its surrounding training samples based on the Bayesian theorem. Then, a joint data gravitation model is developed as the classification measure, in which the data mass is taken to weigh the contribution of different neighbors in a local region. Four benchmark HSI datasets, i.e. the Indian Pines, Pavia University, Salinas, and Grss_dfc_2014, are tested to verify the BGC method. The experimental results are compared with that of several well-known HSI classification methods, including the support vector machines, sparse representation, and other eight state-of-the-art HSI classification methods. The BGC shows apparent superiority in the classification of high-resolution HSIs and also flexibility for HSIs with limited samples

Classification of Contaminated Insulators Using k-Nearest Neighbors Based on Computer Vision

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Enhanced clustering analysis pipeline for performance analysis of parallel applications

Clustering analysis is widely used to stratify data in the same cluster when they are similar according to the specific metrics. We can use the cluster analysis to group the CPU burst of a parallel application, and the regions on each process in-between communication calls or calls to the parallel runtime. The resulting clusters obtained are the different computational trends or phases that appear in the application. These clusters are useful to understand the behavior of the computation part of the application and focus the analyses on those that present performance issues. Although density-based clustering algorithms are a powerful and efficient tool to summarize this type of information, their traditional user-guided clustering methodology has many shortcomings and deficiencies in dealing with the complexity of data, the diversity of data structures, high-dimensionality of data, and the dramatic increase in the amount of data. Consequently, the majority of DBSCAN-like algorithms have weaknesses to handle high-dimensionality and/or Multi-density data, and they are sensitive to their hyper-parameter configuration. Furthermore, extracting insight from the obtained clusters is an intuitive and manual task. To mitigate these weaknesses, we have proposed a new unified approach to replace the user-guided clustering with an automated clustering analysis pipeline, called Enhanced Cluster Identification and Interpretation (ECII) pipeline. To build the pipeline, we propose novel techniques including Robust Independent Feature Selection, Feature Space Curvature Map, Organization Component Analysis, and hyper-parameters tuning to feature selection, density homogenization, cluster interpretation, and model selection which are the main components of our machine learning pipeline. This thesis contributes four new techniques to the Machine Learning field with a particular use case in Performance Analytics field. The first contribution is a novel unsupervised approach for feature selection on noisy data, called Robust Independent Feature Selection (RIFS). Specifically, we choose a feature subset that contains most of the underlying information, using the same criteria as the Independent component analysis. Simultaneously, the noise is separated as an independent component. The second contribution of the thesis is a parametric multilinear transformation method to homogenize cluster densities while preserving the topological structure of the dataset, called Feature Space Curvature Map (FSCM). We present a new Gravitational Self-organizing Map to model the feature space curvature by plugging the concepts of gravity and fabric of space into the Self-organizing Map algorithm to mathematically describe the density structure of the data. To homogenize the cluster density, we introduce a novel mapping mechanism to project the data from the non-Euclidean curved space to a new Euclidean flat space. The third contribution is a novel topological-based method to study potentially complex high-dimensional categorized data by quantifying their shapes and extracting fine-grain insights from them to interpret the clustering result. We introduce our Organization Component Analysis (OCA) method for the automatic arbitrary cluster-shape study without an assumption about the data distribution. Finally, to tune the DBSCAN hyper-parameters, we propose a new tuning mechanism by combining techniques from machine learning and optimization domains, and we embed it in the ECII pipeline. Using this cluster analysis pipeline with the CPU burst data of a parallel application, we provide the developer/analyst with a high-quality SPMD computation structure detection with the added value that reflects the fine grain of the computation regions.El análisis de conglomerados se usa ampliamente para estratificar datos en el mismo conglomerado cuando son similares según las métricas específicas. Nosotros puede usar el análisis de clúster para agrupar la ráfaga de CPU de una aplicación paralela y las regiones en cada proceso intermedio llamadas de comunicación o llamadas al tiempo de ejecución paralelo. Los clusters resultantes obtenidos son las diferentes tendencias computacionales o fases que aparecen en la solicitud. Estos clusters son útiles para entender el comportamiento de la parte de computación del aplicación y centrar los análisis en aquellos que presenten problemas de rendimiento. Aunque los algoritmos de agrupamiento basados en la densidad son una herramienta poderosa y eficiente para resumir este tipo de información, su La metodología tradicional de agrupación en clústeres guiada por el usuario tiene muchas deficiencias y deficiencias al tratar con la complejidad de los datos, la diversidad de estructuras de datos, la alta dimensionalidad de los datos y el aumento dramático en la cantidad de datos. En consecuencia, el La mayoría de los algoritmos similares a DBSCAN tienen debilidades para manejar datos de alta dimensionalidad y/o densidad múltiple, y son sensibles a su configuración de hiperparámetros. Además, extraer información de los clústeres obtenidos es una forma intuitiva y tarea manual Para mitigar estas debilidades, hemos propuesto un nuevo enfoque unificado para reemplazar el agrupamiento guiado por el usuario con un canalización de análisis de agrupamiento automatizado, llamada canalización de identificación e interpretación de clúster mejorada (ECII). para construir el tubería, proponemos técnicas novedosas que incluyen la selección robusta de características independientes, el mapa de curvatura del espacio de características, Análisis de componentes de la organización y ajuste de hiperparámetros para la selección de características, homogeneización de densidad, agrupación interpretación y selección de modelos, que son los componentes principales de nuestra canalización de aprendizaje automático. Esta tesis aporta cuatro nuevas técnicas al campo de Machine Learning con un caso de uso particular en el campo de Performance Analytics. La primera contribución es un enfoque novedoso no supervisado para la selección de características en datos ruidosos, llamado Robust Independent Feature. Selección (RIFS).Específicamente, elegimos un subconjunto de funciones que contiene la mayor parte de la información subyacente, utilizando el mismo criterios como el análisis de componentes independientes. Simultáneamente, el ruido se separa como un componente independiente. La segunda contribución de la tesis es un método de transformación multilineal paramétrica para homogeneizar densidades de clústeres mientras preservando la estructura topológica del conjunto de datos, llamado Mapa de Curvatura del Espacio de Características (FSCM). Presentamos un nuevo Gravitacional Mapa autoorganizado para modelar la curvatura del espacio característico conectando los conceptos de gravedad y estructura del espacio en el Algoritmo de mapa autoorganizado para describir matemáticamente la estructura de densidad de los datos. Para homogeneizar la densidad del racimo, introducimos un mecanismo de mapeo novedoso para proyectar los datos del espacio curvo no euclidiano a un nuevo plano euclidiano espacio. La tercera contribución es un nuevo método basado en topología para estudiar datos categorizados de alta dimensión potencialmente complejos mediante cuantificando sus formas y extrayendo información detallada de ellas para interpretar el resultado de la agrupación. presentamos nuestro Método de análisis de componentes de organización (OCA) para el estudio automático de forma arbitraria de conglomerados sin una suposición sobre el distribución de datos.Postprint (published version

Density-based algorithms for active and anytime clustering

Data intensive applications like biology, medicine, and neuroscience require effective and efficient data mining technologies. Advanced data acquisition methods produce a constantly increasing volume and complexity. As a consequence, the need of new data mining technologies to deal with complex data has emerged during the last decades. In this thesis, we focus on the data mining task of clustering in which objects are separated in different groups (clusters) such that objects inside a cluster are more similar than objects in different clusters. Particularly, we consider density-based clustering algorithms and their applications in biomedicine. The core idea of the density-based clustering algorithm DBSCAN is that each object within a cluster must have a certain number of other objects inside its neighborhood. Compared with other clustering algorithms, DBSCAN has many attractive benefits, e.g., it can detect clusters with arbitrary shape and is robust to outliers, etc. Thus, DBSCAN has attracted a lot of research interest during the last decades with many extensions and applications. In the first part of this thesis, we aim at developing new algorithms based on the DBSCAN paradigm to deal with the new challenges of complex data, particularly expensive distance measures and incomplete availability of the distance matrix. Like many other clustering algorithms, DBSCAN suffers from poor performance when facing expensive distance measures for complex data. To tackle this problem, we propose a new algorithm based on the DBSCAN paradigm, called Anytime Density-based Clustering (A-DBSCAN), that works in an anytime scheme: in contrast to the original batch scheme of DBSCAN, the algorithm A-DBSCAN first produces a quick approximation of the clustering result and then continuously refines the result during the further run. Experts can interrupt the algorithm, examine the results, and choose between (1) stopping the algorithm at any time whenever they are satisfied with the result to save runtime and (2) continuing the algorithm to achieve better results. Such kind of anytime scheme has been proven in the literature as a very useful technique when dealing with time consuming problems. We also introduced an extended version of A-DBSCAN called A-DBSCAN-XS which is more efficient and effective than A-DBSCAN when dealing with expensive distance measures. Since DBSCAN relies on the cardinality of the neighborhood of objects, it requires the full distance matrix to perform. For complex data, these distances are usually expensive, time consuming or even impossible to acquire due to high cost, high time complexity, noisy and missing data, etc. Motivated by these potential difficulties of acquiring the distances among objects, we propose another approach for DBSCAN, called Active Density-based Clustering (Act-DBSCAN). Given a budget limitation B, Act-DBSCAN is only allowed to use up to B pairwise distances ideally to produce the same result as if it has the entire distance matrix at hand. The general idea of Act-DBSCAN is that it actively selects the most promising pairs of objects to calculate the distances between them and tries to approximate as much as possible the desired clustering result with each distance calculation. This scheme provides an efficient way to reduce the total cost needed to perform the clustering. Thus it limits the potential weakness of DBSCAN when dealing with the distance sparseness problem of complex data. As a fundamental data clustering algorithm, density-based clustering has many applications in diverse fields. In the second part of this thesis, we focus on an application of density-based clustering in neuroscience: the segmentation of the white matter fiber tracts in human brain acquired from Diffusion Tensor Imaging (DTI). We propose a model to evaluate the similarity between two fibers as a combination of structural similarity and connectivity-related similarity of fiber tracts. Various distance measure techniques from fields like time-sequence mining are adapted to calculate the structural similarity of fibers. Density-based clustering is used as the segmentation algorithm. We show how A-DBSCAN and A-DBSCAN-XS are used as novel solutions for the segmentation of massive fiber datasets and provide unique features to assist experts during the fiber segmentation process.Datenintensive Anwendungen wie Biologie, Medizin und Neurowissenschaften erfordern effektive und effiziente Data-Mining-Technologien. Erweiterte Methoden der Datenerfassung erzeugen stetig wachsende Datenmengen und Komplexit\"at. In den letzten Jahrzehnten hat sich daher ein Bedarf an neuen Data-Mining-Technologien f\"ur komplexe Daten ergeben. In dieser Arbeit konzentrieren wir uns auf die Data-Mining-Aufgabe des Clusterings, in der Objekte in verschiedenen Gruppen (Cluster) getrennt werden, so dass Objekte in einem Cluster untereinander viel \"ahnlicher sind als Objekte in verschiedenen Clustern. Insbesondere betrachten wir dichtebasierte Clustering-Algorithmen und ihre Anwendungen in der Biomedizin. Der Kerngedanke des dichtebasierten Clustering-Algorithmus DBSCAN ist, dass jedes Objekt in einem Cluster eine bestimmte Anzahl von anderen Objekten in seiner Nachbarschaft haben muss. Im Vergleich mit anderen Clustering-Algorithmen hat DBSCAN viele attraktive Vorteile, zum Beispiel kann es Cluster mit beliebiger Form erkennen und ist robust gegen\"uber Ausrei{\ss}ern. So hat DBSCAN in den letzten Jahrzehnten gro{\ss}es Forschungsinteresse mit vielen Erweiterungen und Anwendungen auf sich gezogen. Im ersten Teil dieser Arbeit wollen wir auf die Entwicklung neuer Algorithmen eingehen, die auf dem DBSCAN Paradigma basieren, um mit den neuen Herausforderungen der komplexen Daten, insbesondere teurer Abstandsma{\ss}e und unvollst\"andiger Verf\"ugbarkeit der Distanzmatrix umzugehen. Wie viele andere Clustering-Algorithmen leidet DBSCAN an schlechter Per- formanz, wenn es teuren Abstandsma{\ss}en f\"ur komplexe Daten gegen\"uber steht. Um dieses Problem zu l\"osen, schlagen wir einen neuen Algorithmus vor, der auf dem DBSCAN Paradigma basiert, genannt Anytime Density-based Clustering (A-DBSCAN), der mit einem Anytime Schema funktioniert. Im Gegensatz zu dem urspr\"unglichen Schema DBSCAN, erzeugt der Algorithmus A-DBSCAN zuerst eine schnelle Ann\"aherung des Clusterings-Ergebnisses und verfeinert dann kontinuierlich das Ergebnis im weiteren Verlauf. Experten k\"onnen den Algorithmus unterbrechen, die Ergebnisse pr\"ufen und w\"ahlen zwischen (1) Anhalten des Algorithmus zu jeder Zeit, wann immer sie mit dem Ergebnis zufrieden sind, um Laufzeit sparen und (2) Fortsetzen des Algorithmus, um bessere Ergebnisse zu erzielen. Eine solche Art eines "Anytime Schemas" ist in der Literatur als eine sehr n\"utzliche Technik erprobt, wenn zeitaufwendige Problemen anfallen. Wir stellen auch eine erweiterte Version von A-DBSCAN als A-DBSCAN-XS vor, die effizienter und effektiver als A-DBSCAN beim Umgang mit teuren Abstandsma{\ss}en ist. Da DBSCAN auf der Kardinalit\"at der Nachbarschaftsobjekte beruht, ist es notwendig, die volle Distanzmatrix auszurechen. F\"ur komplexe Daten sind diese Distanzen in der Regel teuer, zeitaufwendig oder sogar unm\"oglich zu errechnen, aufgrund der hohen Kosten, einer hohen Zeitkomplexit\"at oder verrauschten und fehlende Daten. Motiviert durch diese m\"oglichen Schwierigkeiten der Berechnung von Entfernungen zwischen Objekten, schlagen wir einen anderen Ansatz f\"ur DBSCAN vor, namentlich Active Density-based Clustering (Act-DBSCAN). Bei einer Budgetbegrenzung B, darf Act-DBSCAN nur bis zu B ideale paarweise Distanzen verwenden, um das gleiche Ergebnis zu produzieren, wie wenn es die gesamte Distanzmatrix zur Hand h\"atte. Die allgemeine Idee von Act-DBSCAN ist, dass es aktiv die erfolgversprechendsten Paare von Objekten w\"ahlt, um die Abst\"ande zwischen ihnen zu berechnen, und versucht, sich so viel wie m\"oglich dem gew\"unschten Clustering mit jeder Abstandsberechnung zu n\"ahern. Dieses Schema bietet eine effiziente M\"oglichkeit, die Gesamtkosten der Durchf\"uhrung des Clusterings zu reduzieren. So schr\"ankt sie die potenzielle Schw\"ache des DBSCAN beim Umgang mit dem Distance Sparseness Problem von komplexen Daten ein. Als fundamentaler Clustering-Algorithmus, hat dichte-basiertes Clustering viele Anwendungen in den unterschiedlichen Bereichen. Im zweiten Teil dieser Arbeit konzentrieren wir uns auf eine Anwendung des dichte-basierten Clusterings in den Neurowissenschaften: Die Segmentierung der wei{\ss}en Substanz bei Faserbahnen im menschlichen Gehirn, die vom Diffusion Tensor Imaging (DTI) erfasst werden. Wir schlagen ein Modell vor, um die \"Ahnlichkeit zwischen zwei Fasern als einer Kombination von struktureller und konnektivit\"atsbezogener \"Ahnlichkeit von Faserbahnen zu beurteilen. Verschiedene Abstandsma{\ss}e aus Bereichen wie dem Time-Sequence Mining werden angepasst, um die strukturelle \"Ahnlichkeit von Fasern zu berechnen. Dichte-basiertes Clustering wird als Segmentierungsalgorithmus verwendet. Wir zeigen, wie A-DBSCAN und A-DBSCAN-XS als neuartige L\"osungen f\"ur die Segmentierung von sehr gro{\ss}en Faserdatens\"atzen verwendet werden, und bieten innovative Funktionen, um Experten w\"ahrend des Fasersegmentierungsprozesses zu unterst\"utzen

Screening Λ\Lambda in a new modified gravity model

We study a new model of Energy-Momentum Squared Gravity (EMSG), called Energy-Momentum Log Gravity (EMLG), constructed by the addition of the term $f(T_{\mu\nu}T^{\mu\nu})=\alpha \ln(\lambda\,T_{\mu\nu}T^{\mu\nu})$, envisaged as a correction, to the Einstein-Hilbert action with cosmological constant $\Lambda$. The choice of this modification is made as a specific way of including new terms in the right-hand side of the Einstein field equations, resulting in constant effective inertial mass density and, importantly, leading to an explicit exact solution of the matter energy density in terms of redshift. We look for viable cosmologies, in particular, an extension of the standard $\Lambda$CDM model. EMLG provides an effective dynamical dark energy passing below zero at large redshifts, accommodating a mechanism for screening $\Lambda$ in this region, in line with suggestions for alleviating some of the tensions that arise between observational data sets within the standard $\Lambda$CDM model. We present a detailed theoretical investigation of the model and then constrain the free parameter $\alpha'$, a normalisation of $\alpha$, using the latest observational data. The data does not rule out the $\Lambda$CDM limit of our model ($\alpha'= 0$), but prefers slightly negative values of the EMLG model parameter ($\alpha'= -0.032\pm 0.043$), which leads to the screening of $\Lambda$. We also discuss how EMLG relaxes the persistent tension that appears in the measurements of $H_0$ within the standard $\Lambda$CDM model.Comment: 17 pages, 11 figures, 1 table; matches the version published in EPJ

Unusual Matter Models in Cosmology

This thesis is divided into three sections. In the first section, we discuss Singular Inflation, in which a scalar field exhibits a weak singularity, originally illustrated by the non-integer powerlaw potentials. We expand the class of potentials that result in this phenomenon, by providing constraints on the derivatives of the functions. In the second section, we study the cosmological effects of adding terms of the form f(TμνTμν) = η(TμνTμν)n to the matter Lagrangian of general relativity. The resulting cosmological theories give rise to field equations of similar form to several particular theories with different fundamental bases, including bulk viscous cosmology, loop quantum gravity, k-essence, and brane-world cosmologies. We find a range of exact solutions for isotropic universes, discuss their behaviours with reference to the early- and late-time evolution, accelerated expansion, and the occurrence or avoidance of singularities. We briefly discuss extensions to anisotropic cosmologies and delineate the situations where the higher-order matter terms will dominate over anisotropies on approach to cosmological singularities. Finally, in the third section, we study a related model, called Energy-Momentum Log Gravity (EMLG), constructed by the addition of the term f(TμνTμν) = α ln(λ TμνTμν) to the Einstein-Hilbert action with cosmological constant Λ. This choice of model results in constant effective inertial mass density and has an explicit exact solution of the matter energy density in terms of redshift. We look for viable cosmologies, in particular, an extension of the standard ΛCDM model. EMLG provides an effective dynamical dark energy passing below zero at large redshifts, accommodating a mechanism for screening Λ in this region, in line with suggestions for alleviating some of the tensions that arise between observational data sets within the standard ΛCDM model. We present a detailed theoretical investigation of the model and then constrain the free parameter α′, a normalisation of α, using the latest observational data. The data do not rule out the ΛCDM limit of our model (α′ = 0), but prefers slightly negative values of the EMLG model parameter (α′ = −0.032 ± 0.043), which leads to the screening of Λ. We also discuss how EMLG relaxes the persistent tension that appears in the measurements of H0 within the standard ΛCDM model

A methodology for automatic parameter-tuning and center selection in density-peak clustering methods

The density-peak clustering algorithm, which we refer to as DPC, is a novel and efficient density-based clustering approach. The method has the advantage of allowing non-convex clusters, and clusters of variable size and density, to be grouped together, but it also has some limitations, such as the visual location of centers and the parameter tuning. This paper describes an optimization-based methodology for automatic parameter/center selection applicable both to the DPC and to other algorithms derived from it. The objective function is an internal/external cluster validity index, and the decisions are the parameterization of the algorithm and the choice of centers. The internal validation measures lead to an automatic parameter-tuning process, and the external validation measures lead to the so-called optimal rules, which are a tool to bound the performance of a given algorithm from above on the set of parameterizations. A numerical experiment with real data was performed for the DPC and for the fuzzy weighted k-nearest neighbor (FKNN-DPC) which validates the automatic parameter-tuning methodology and demonstrates its efficiency compared to the state of the art.El algoritmo de agrupamiento de picos de densidad, al que nos referimos como DPC , es un enfoque de agrupamiento basado en la densidad novedoso y eficiente. El método tiene la ventaja de permitir agrupar clústeres no convexos y clústeres de tamaño y densidad variables, pero también tiene algunas limitaciones, como la ubicación visual de los centros y el ajuste de parámetros. Este artículo describe una metodología basada en la optimización para la selección automática de parámetros/centros aplicable tanto al DPC como a otros algoritmos derivados de él. La función objetivo es un índice de validez de clúster interno/externo, y las decisiones son la parametrización del algoritmo y la elección de los centros. Las medidas de validación interna conducen a un proceso automático de ajuste de parámetros, y las medidas de validación externa conducen al llamadoreglas óptimas , que son una herramienta para limitar el rendimiento de un algoritmo dado desde arriba en el conjunto de parametrizaciones. Se realizó un experimento numérico con datos reales para el DPC y para el k -vecino más cercano ponderado difuso ( FKNN-DPC ) que valida la metodología de ajuste automático de parámetros y demuestra su eficiencia en comparación con el estado del arte

Low-level interpretability and high-level interpretability: a unified view of data-driven interpretable fuzzy system modelling

This paper aims at providing an in-depth overview of designing interpretable fuzzy inference models from data within a unified framework. The objective of complex system modelling is to develop reliable and understandable models for human being to get insights into complex real-world systems whose first-principle models are unknown. Because system behaviour can be described naturally as a series of linguistic rules, data-driven fuzzy modelling becomes an attractive and widely used paradigm for this purpose. However, fuzzy models constructed from data by adaptive learning algorithms usually suffer from the loss of model interpretability. Model accuracy and interpretability are two conflicting objectives, so interpretation preservation during adaptation in data-driven fuzzy system modelling is a challenging task, which has received much attention in fuzzy system modelling community. In order to clearly discriminate the different roles of fuzzy sets, input variables, and other components in achieving an interpretable fuzzy model, a taxonomy of fuzzy model interpretability is first proposed in terms of low-level interpretability and high-level interpretability in this paper. The low-level interpretability of fuzzy models refers to fuzzy model interpretability achieved by optimizing the membership functions in terms of semantic criteria on fuzzy set level, while the high-level interpretability refers to fuzzy model interpretability obtained by dealing with the coverage, completeness, and consistency of the rules in terms of the criteria on fuzzy rule level. Some criteria for low-level interpretability and high-level interpretability are identified, respectively. Different data-driven fuzzy modelling techniques in the literature focusing on the interpretability issues are reviewed and discussed from the perspective of low-level interpretability and high-level interpretability. Furthermore, some open problems about interpretable fuzzy models are identified and some potential new research directions on fuzzy model interpretability are also suggested. Crown Copyright © 2008