7 research outputs found
Development of a Machine Learning Model for Optimal Applicator Selection in High-Dose-Rate Cervical Brachytherapy
PurposeTo develop and validate a preliminary machine learning (ML) model aiding in the selection of intracavitary (IC) versus hybrid interstitial (IS) applicators for high-dose-rate (HDR) cervical brachytherapy.MethodsFrom a dataset of 233 treatments using IC or IS applicators, a set of geometric features of the structure set were extracted, including the volumes of OARs (bladder, rectum, sigmoid colon) and HR-CTV, proximity of OARs to the HR-CTV, mean and maximum lateral and vertical HR-CTV extent, and offset of the HR-CTV centre-of-mass from the applicator tandem axis. Feature selection using an ANOVA F-test and mutual information removed uninformative features from this set. Twelve classification algorithms were trained and tested over 100 iterations to determine the highest performing individual models through nested 5-fold cross-validation. Three models with the highest accuracy were combined using soft voting to form the final model. This model was trained and tested over 1,000 iterations, during which the relative importance of each feature in the applicator selection process was determined.ResultsFeature selection indicated that the mean and maximum lateral and vertical extent, volume, and axis offset of the HR-CTV were the most informative features and were thus provided to the ML models. Relative feature importances indicated that the HR-CTV volume and mean lateral extent were most important for applicator selection. From the comparison of the individual classification algorithms, it was found that the highest performing algorithms were tree-based ensemble methods – AdaBoost Classifier (ABC), Gradient Boosting Classifier (GBC), and Random Forest Classifier (RFC). The accuracy of the individual models was compared to the voting model for 100 iterations (ABC = 91.6 ± 3.1%, GBC = 90.4 ± 4.1%, RFC = 89.5 ± 4.0%, Voting Model = 92.2 ± 1.8%) and the voting model was found to have superior accuracy. Over the final 1,000 evaluation iterations, the final voting model demonstrated a high predictive accuracy (91.5 ± 0.9%) and F1 Score (90.6 ± 1.1%).ConclusionThe presented model demonstrates high discriminative performance, highlighting the potential for utilization in informing applicator selection prospectively following further clinical validation
Segmentierung medizinischer Bilddaten und bildgestützte intraoperative Navigation
Die Entwicklung von Algorithmen zur automatischen oder semi-automatischen Verarbeitung von medizinischen Bilddaten hat in den letzten Jahren mehr und mehr an Bedeutung gewonnen. Das liegt zum einen an den immer besser werdenden medizinischen Aufnahmemodalitäten, die den menschlichen Körper immer feiner virtuell abbilden können. Zum anderen liegt dies an der verbesserten Computerhardware, die eine algorithmische Verarbeitung der teilweise im Gigabyte-Bereich liegenden Datenmengen in einer vernünftigen Zeit erlaubt. Das Ziel dieser Habilitationsschrift ist die Entwicklung und Evaluation von Algorithmen für die medizinische Bildverarbeitung. Insgesamt besteht die Habilitationsschrift aus einer Reihe von Publikationen, die in drei übergreifende Themenbereiche gegliedert sind:
-Segmentierung medizinischer Bilddaten anhand von vorlagenbasierten Algorithmen
-Experimentelle Evaluation quelloffener Segmentierungsmethoden unter medizinischen Einsatzbedingungen
-Navigation zur Unterstützung intraoperativer Therapien
Im Bereich Segmentierung medizinischer Bilddaten anhand von vorlagenbasierten Algorithmen wurden verschiedene graphbasierte Algorithmen in 2D und 3D entwickelt, die einen gerichteten Graphen mittels einer Vorlage aufbauen. Dazu gehört die Bildung eines Algorithmus zur Segmentierung von Wirbeln in 2D und 3D. In 2D wird eine rechteckige und in 3D eine würfelförmige Vorlage genutzt, um den Graphen aufzubauen und das Segmentierungsergebnis zu berechnen. Außerdem wird eine graphbasierte Segmentierung von Prostatadrüsen durch eine Kugelvorlage zur automatischen Bestimmung der Grenzen zwischen Prostatadrüsen und umliegenden Organen vorgestellt. Auf den vorlagenbasierten Algorithmen aufbauend, wurde ein interaktiver Segmentierungsalgorithmus, der einem Benutzer in Echtzeit das Segmentierungsergebnis anzeigt, konzipiert und implementiert. Der Algorithmus nutzt zur Segmentierung die verschiedenen Vorlagen, benötigt allerdings nur einen Saatpunkt des Benutzers. In einem weiteren Ansatz kann der Benutzer die Segmentierung interaktiv durch zusätzliche Saatpunkte verfeinern. Dadurch wird es möglich, eine semi-automatische Segmentierung auch in schwierigen Fällen zu einem zufriedenstellenden Ergebnis zu führen.
Im Bereich Evaluation quelloffener Segmentierungsmethoden unter medizinischen Einsatzbedingungen wurden verschiedene frei verfügbare Segmentierungsalgorithmen anhand von Patientendaten aus der klinischen Routine getestet. Dazu gehörte die Evaluierung der semi-automatischen Segmentierung von Hirntumoren, zum Beispiel Hypophysenadenomen und Glioblastomen, mit der frei verfügbaren Open Source-Plattform 3D Slicer. Dadurch konnte gezeigt werden, wie eine rein manuelle Schicht-für-Schicht-Vermessung des Tumorvolumens in der Praxis unterstützt und beschleunigt werden kann. Weiterhin wurde die Segmentierung von Sprachbahnen in medizinischen Aufnahmen von Hirntumorpatienten auf verschiedenen Plattformen evaluiert.
Im Bereich Navigation zur Unterstützung intraoperativer Therapien wurden Softwaremodule zum Begleiten von intra-operativen Eingriffen in verschiedenen Phasen einer Behandlung (Therapieplanung, Durchführung, Kontrolle) entwickelt. Dazu gehört die erstmalige Integration des OpenIGTLink-Netzwerkprotokolls in die medizinische Prototyping-Plattform MeVisLab, die anhand eines NDI-Navigationssystems evaluiert wurde. Außerdem wurde hier ebenfalls zum ersten Mal die Konzeption und Implementierung eines medizinischen Software-Prototypen zur Unterstützung der intraoperativen gynäkologischen Brachytherapie vorgestellt. Der Software-Prototyp enthielt auch ein Modul zur erweiterten Visualisierung bei der MR-gestützten interstitiellen gynäkologischen Brachytherapie, welches unter anderem die Registrierung eines gynäkologischen Brachytherapie-Instruments in einen intraoperativen Datensatz einer Patientin ermöglichte. Die einzelnen Module führten zur Vorstellung eines umfassenden bildgestützten Systems für die gynäkologische Brachytherapie in einem multimodalen Operationssaal. Dieses System deckt die prä-, intra- und postoperative Behandlungsphase bei einer interstitiellen gynäkologischen Brachytherapie ab
Advanced tracking and image registration techniques for intraoperative radiation therapy
Mención Internacional en el título de doctorIntraoperative electron radiation therapy (IOERT) is a technique used to
deliver radiation to the surgically opened tumor bed without irradiating healthy
tissue. Treatment planning systems and mobile linear accelerators enable
clinicians to optimize the procedure, minimize stress in the operating room (OR)
and avoid transferring the patient to a dedicated radiation room. However,
placement of the radiation collimator over the tumor bed requires a validation
methodology to ensure correct delivery of the dose prescribed in the treatment
planning system. In this dissertation, we address three well-known limitations of
IOERT: applicator positioning over the tumor bed, docking of the mobile linear
accelerator gantry with the applicator and validation of the dose delivery
prescribed. This thesis demonstrates that these limitations can be overcome by
positioning the applicator appropriately with respect to the patient’s anatomy.
The main objective of the study was to assess technological and procedural
alternatives for improvement of IOERT performance and resolution of
problems of uncertainty. Image-to-world registration, multicamera optical
trackers, multimodal imaging techniques and mobile linear accelerator docking
are addressed in the context of IOERT.
IOERT is carried out by a multidisciplinary team in a highly complex
environment that has special tracking needs owing to the characteristics of its
working volume (i.e., large and prone to occlusions), in addition to the requisites
of accuracy. The first part of this dissertation presents the validation of a
commercial multicamera optical tracker in terms of accuracy, sensitivity to
miscalibration, camera occlusions and detection of tools using a feasible surgical
setup. It also proposes an automatic miscalibration detection protocol that
satisfies the IOERT requirements of automaticity and speed. We show that the
multicamera tracker is suitable for IOERT navigation and demonstrate the
feasibility of the miscalibration detection protocol in clinical setups.
Image-to-world registration is one of the main issues during image-guided
applications where the field of interest and/or the number of possible
anatomical localizations is large, such as IOERT. In the second part of this
dissertation, a registration algorithm for image-guided surgery based on lineshaped
fiducials (line-based registration) is proposed and validated. Line-based registration decreases acquisition time during surgery and enables better
registration accuracy than other published algorithms.
In the third part of this dissertation, we integrate a commercial low-cost
ultrasound transducer and a cone beam CT C-arm with an optical tracker for
image-guided interventions to enable surgical navigation and explore image based
registration techniques for both modalities.
In the fourth part of the dissertation, a navigation system based on optical
tracking for the docking of the mobile linear accelerator to the radiation
applicator is assessed. This system improves safety and reduces procedure time.
The system tracks the prescribed collimator location to solve the movements
that the linear accelerator should perform to reach the docking position and
warns the user about potentially unachievable arrangements before the actual
procedure. A software application was implemented to use this system in the
OR, where it was also evaluated to assess the improvement in docking speed.
Finally, in the last part of the dissertation, we present and assess the
installation setup for a navigation system in a dedicated IOERT OR, determine
the steps necessary for the IOERT process, identify workflow limitations and
evaluate the feasibility of the integration of the system in a real OR. The
navigation system safeguards the sterile conditions of the OR, clears the space
available for surgeons and is suitable for any similar dedicated IOERT OR.La Radioterapia Intraoperatoria por electrones (RIO) consiste en la
aplicación de radiación de alta energía directamente sobre el lecho tumoral,
accesible durante la cirugía, evitando radiar los tejidos sanos. Hoy en día, avances
como los sistemas de planificación (TPS) y la aparición de aceleradores lineales
móviles permiten optimizar el procedimiento, minimizar el estrés clínico en el
entorno quirúrgico y evitar el desplazamiento del paciente durante la cirugía a
otra sala para ser radiado. La aplicación de la radiación se realiza mediante un
colimador del haz de radiación (aplicador) que se coloca sobre el lecho tumoral
de forma manual por el oncólogo radioterápico. Sin embargo, para asegurar una
correcta deposición de la dosis prescrita y planificada en el TPS, es necesaria una
adecuada validación de la colocación del colimador. En esta Tesis se abordan
tres limitaciones conocidas del procedimiento RIO: el correcto posicionamiento
del aplicador sobre el lecho tumoral, acoplamiento del acelerador lineal con el
aplicador y validación de la dosis de radiación prescrita. Esta Tesis demuestra
que estas limitaciones pueden ser abordadas mediante el posicionamiento del
aplicador de radiación en relación con la anatomía del paciente.
El objetivo principal de este trabajo es la evaluación de alternativas
tecnológicas y procedimentales para la mejora de la práctica de la RIO y resolver
los problemas de incertidumbre descritos anteriormente. Concretamente se
revisan en el contexto de la radioterapia intraoperatoria los siguientes temas: el
registro de la imagen y el paciente, sistemas de posicionamiento multicámara,
técnicas de imagen multimodal y el acoplamiento del acelerador lineal móvil.
El entorno complejo y multidisciplinar de la RIO precisa de necesidades
especiales para el empleo de sistemas de posicionamiento como una alta
precisión y un volumen de trabajo grande y propenso a las oclusiones de los
sensores de posición. La primera parte de esta Tesis presenta una exhaustiva
evaluación de un sistema de posicionamiento óptico multicámara comercial.
Estudiamos la precisión del sistema, su sensibilidad a errores cometidos en la
calibración, robustez frente a posibles oclusiones de las cámaras y precisión en
el seguimiento de herramientas en un entorno quirúrgico real. Además,
proponemos un protocolo para la detección automática de errores por calibración que satisface los requisitos de automaticidad y velocidad para la RIO
demostrando la viabilidad del empleo de este sistema para la navegación en RIO.
Uno de los problemas principales de la cirugía guiada por imagen es el
correcto registro de la imagen médica y la anatomía del paciente en el quirófano.
En el caso de la RIO, donde el número de posibles localizaciones anatómicas es
bastante amplio, así como el campo de trabajo es grande se hace necesario
abordar este problema para una correcta navegación. Por ello, en la segunda
parte de esta Tesis, proponemos y validamos un nuevo algoritmo de registro
(LBR) para la cirugía guiada por imagen basado en marcadores lineales. El
método propuesto reduce el tiempo de la adquisición de la posición de los
marcadores durante la cirugía y supera en precisión a otros algoritmos de registro
establecidos y estudiados en la literatura.
En la tercera parte de esta tesis, integramos un transductor de ultrasonido
comercial de bajo coste, un arco en C de rayos X con haz cónico y un sistema
de posicionamiento óptico para intervenciones guiadas por imagen que permite
la navegación quirúrgica y exploramos técnicas de registro de imagen para ambas
modalidades.
En la cuarta parte de esta tesis se evalúa un navegador basado en el sistema
de posicionamiento óptico para el acoplamiento del acelerador lineal móvil con
aplicador de radiación, mejorando la seguridad y reduciendo el tiempo del propio
acoplamiento. El sistema es capaz de localizar el colimador en el espacio y
proporcionar los movimientos que el acelerador lineal debe realizar para alcanzar
la posición de acoplamiento. El sistema propuesto es capaz de advertir al usuario
de aquellos casos donde la posición de acoplamiento sea inalcanzable. El sistema
propuesto de ayuda para el acoplamiento se integró en una aplicación software
que fue evaluada para su uso final en quirófano demostrando su viabilidad y la
reducción de tiempo de acoplamiento mediante su uso.
Por último, presentamos y evaluamos la instalación de un sistema de
navegación en un quirófano RIO dedicado, determinamos las necesidades desde
el punto de vista procedimental, identificamos las limitaciones en el flujo de
trabajo y evaluamos la viabilidad de la integración del sistema en un entorno
quirúrgico real. El sistema propuesto demuestra ser apto para el entorno RIO
manteniendo las condiciones de esterilidad y dejando despejado el campo
quirúrgico además de ser adaptable a cualquier quirófano similar.Programa Oficial de Doctorado en Multimedia y ComunicacionesPresidente: Raúl San José Estépar.- Secretario: María Arrate Muñoz Barrutia.- Vocal: Carlos Ferrer Albiac
Systems Engineering: Availability and Reliability
Current trends in Industry 4.0 are largely related to issues of reliability and availability. As a result of these trends and the complexity of engineering systems, research and development in this area needs to focus on new solutions in the integration of intelligent machines or systems, with an emphasis on changes in production processes aimed at increasing production efficiency or equipment reliability. The emergence of innovative technologies and new business models based on innovation, cooperation networks, and the enhancement of endogenous resources is assumed to be a strong contribution to the development of competitive economies all around the world. Innovation and engineering, focused on sustainability, reliability, and availability of resources, have a key role in this context. The scope of this Special Issue is closely associated to that of the ICIE’2020 conference. This conference and journal’s Special Issue is to present current innovations and engineering achievements of top world scientists and industrial practitioners in the thematic areas related to reliability and risk assessment, innovations in maintenance strategies, production process scheduling, management and maintenance or systems analysis, simulation, design and modelling
CT Scanning
Since its introduction in 1972, X-ray computed tomography (CT) has evolved into an essential diagnostic imaging tool for a continually increasing variety of clinical applications. The goal of this book was not simply to summarize currently available CT imaging techniques but also to provide clinical perspectives, advances in hybrid technologies, new applications other than medicine and an outlook on future developments. Major experts in this growing field contributed to this book, which is geared to radiologists, orthopedic surgeons, engineers, and clinical and basic researchers. We believe that CT scanning is an effective and essential tools in treatment planning, basic understanding of physiology, and and tackling the ever-increasing challenge of diagnosis in our society
PRELIMINARY FINDINGS OF A POTENZIATED PIEZOSURGERGICAL DEVICE AT THE RABBIT SKULL
The number of available ultrasonic osteotomes has remarkably increased. In vitro and in vivo studies
have revealed differences between conventional osteotomes, such as rotating or sawing devices, and
ultrasound-supported osteotomes (Piezosurgery®) regarding the micromorphology and roughness
values of osteotomized bone surfaces.
Objective: the present study compares the micro-morphologies and roughness values of
osteotomized bone surfaces after the application of rotating and sawing devices, Piezosurgery
Medical® and Piezosurgery Medical New Generation Powerful Handpiece.
Methods: Fresh, standard-sized bony samples were taken from a rabbit skull using the following
osteotomes: rotating and sawing devices, Piezosurgery Medical® and a Piezosurgery Medical New
Generation Powerful Handpiece. The required duration of time for each osteotomy was recorded.
Micromorphologies and roughness values to characterize the bone surfaces following the different
osteotomy methods were described. The prepared surfaces were examined via light microscopy,
environmental surface electron microscopy (ESEM), transmission electron microscopy (TEM), confocal
laser scanning microscopy (CLSM) and atomic force microscopy. The selective cutting of mineralized
tissues while preserving adjacent soft tissue (dura mater and nervous tissue) was studied. Bone
necrosis of the osteotomy sites and the vitality of the osteocytes near the sectional plane were
investigated, as well as the proportion of apoptosis or cell degeneration.
Results and Conclusions: The potential positive effects on bone healing and reossification
associated with different devices were evaluated and the comparative analysis among the different
devices used was performed, in order to determine the best osteotomes to be employed during
cranio-facial surgery