Evaluation Of Automated Eye Blink Artefact Removal Using Stacked Dense Autoencoder

The presence of artefacts in Electroencephalograph (EEG) signals can have a considerable impact on the information they portray. In this comparative study, the automated removal of eye blink artefacts using the constrained latent representation of a stacked dense autoencoders (SDAE) and comparing its ability to that of the manual independent component analysis (ICA) approach was evaluated. A comparative evaluation of 5 stacked dense autoencoder architectures lead to a chosen architecture for which the ability to automatically detect and remove eye blink artefacts were both statistically and humanistically evaluated. The ability of the stacked dense autoencoder was statistically evaluated with the manual approach of ICA using the correlation coefficient, a comparative affect on the SNR using both approaches and a humanistic evaluation using visual inspections of the components of the stacked dense autoencoder reconstruction to that of the post ICA reconstruction where an inverse RMSE allowed for a further statistical evaluation of this comparison. It was found that the stacked dense autoencoder was unable to reconstruct random signal segments in any meaningful capacity when compared to that of ICA

Stacked Convolutional Recurrent Auto-encoder for Noise Reduction in EEG

Electroencephalogram (EEG) can be used to record electrical potentials in the brain by attaching electrodes to the scalp. However, these low amplitude recordings are susceptible to noise which originates from several sources including ocular, pulse and muscle artefacts. Their presence has a severe impact on analysis and diagnoses of brain abnormalities. This research assessed the effectiveness of a stacked convolutional-recurrent auto-encoder (CR-AE) for noise reduction of EEG signal. Performance was evaluated using the signal-to-noise ratio (SNR) and peak signal-to-noise ratio (PSNR) in comparison to principal component analysis (PCA), independent component analysis (ICA) and a simple auto-encoder (AE). The Harrell-Davis quantile estimator was used to compare SNR and PSNR distributions of reconstructed and raw signals. It was found that the proposed CR-AE achieved a mean SNR of 5:53 db and signicantly increased the SNR across all quantiles for each channel compared to the state-of-the-art methods. However, though SNR increased PSNR did not and the proposed CR-AE was outperformed by each baseline across the majority of quantiles for all channels. In addition, though reconstruction error was very low none of the proposed CR-AE architectures could generalize to the second dataset

Noise Reduction of EEG Signals Using Autoencoders Built Upon GRU based RNN Layers

Understanding the cognitive and functional behaviour of the brain by its electrical activity is an important area of research. Electroencephalography (EEG) is a method that measures and record electrical activities of the brain from the scalp. It has been used for pathology analysis, emotion recognition, clinical and cognitive research, diagnosing various neurological and psychiatric disorders and for other applications. Since the EEG signals are sensitive to activities other than the brain ones, such as eye blinking, eye movement, head movement, etc., it is not possible to record EEG signals without any noise. Thus, it is very important to use an efficient noise reduction technique to get more accurate recordings. Numerous traditional techniques such as Principal Component Analysis (PCA), Independent Component Analysis (ICA), wavelet transformations and machine learning techniques were proposed for reducing the noise in EEG signals. The aim of this paper is to investigate the effectiveness of stacked autoencoders built upon Gated Recurrent Unit (GRU) based Recurrent Neural Network (RNN) layers (GRU-AE) against PCA. To achieve this, Harrell-Davis decile values for the reconstructed signals’ signal-to- noise ratio distributions were compared and it was found that the GRU-AE outperformed PCA for noise reduction of EEG signals

Sleep Stage Classification: A Deep Learning Approach

Sleep occupies significant part of human life. The diagnoses of sleep related disorders are of great importance. To record specific physical and electrical activities of the brain and body, a multi-parameter test, called polysomnography (PSG), is normally used. The visual process of sleep stage classification is time consuming, subjective and costly. To improve the accuracy and efficiency of the sleep stage classification, automatic classification algorithms were developed. In this research work, we focused on pre-processing (filtering boundaries and de-noising algorithms) and classification steps of automatic sleep stage classification. The main motivation for this work was to develop a pre-processing and classification framework to clean the input EEG signal without manipulating the original data thus enhancing the learning stage of deep learning classifiers. For pre-processing EEG signals, a lossless adaptive artefact removal method was proposed. Rather than other works that used artificial noise, we used real EEG data contaminated with EOG and EMG for evaluating the proposed method. The proposed adaptive algorithm led to a significant enhancement in the overall classification accuracy. In the classification area, we evaluated the performance of the most common sleep stage classifiers using a comprehensive set of features extracted from PSG signals. Considering the challenges and limitations of conventional methods, we proposed two deep learning-based methods for classification of sleep stages based on Stacked Sparse AutoEncoder (SSAE) and Convolutional Neural Network (CNN). The proposed methods performed more efficiently by eliminating the need for conventional feature selection and feature extraction steps respectively. Moreover, although our systems were trained with lower number of samples compared to the similar studies, they were able to achieve state of art accuracy and higher overall sensitivity

ABOT: an open-source online benchmarking tool for machine learning-based artefact detection and removal methods from neuronal signals

Brain signals are recorded using different techniques to aid an accurate understanding of brain function and to treat its disorders. Untargeted internal and external sources contaminate the acquired signals during the recording process. Often termed as artefacts, these contaminations cause serious hindrances in decoding the recorded signals; hence, they must be removed to facilitate unbiased decision-making for a given investigation. Due to the complex and elusive manifestation of artefacts in neuronal signals, computational techniques serve as powerful tools for their detection and removal. Machine learning (ML) based methods have been successfully applied in this task. Due to ML’s popularity, many articles are published every year, making it challenging to find, compare and select the most appropriate method for a given experiment. To this end, this paper presents ABOT (Artefact removal Benchmarking Online Tool) as an online benchmarking tool which allows users to compare existing ML-driven artefact detection and removal methods from the literature. The characteristics and related information about the existing methods have been compiled as a knowledgebase (KB) and presented through a user-friendly interface with interactive plots and tables for users to search it using several criteria. Key characteristics extracted from over 120 articles from the literature have been used in the KB to help compare the specific ML models. To comply with the FAIR (Findable, Accessible, Interoperable and Reusable) principle, the source code and documentation of the toolbox have been made available via an open-access repository

Multimodal approach for pilot mental state detection based on EEG

The safety of flight operations depends on the cognitive abilities of pilots. In recent years, there has been growing concern about potential accidents caused by the declining mental states of pilots. We have developed a novel multimodal approach for mental state detection in pilots using electroencephalography (EEG) signals. Our approach includes an advanced automated preprocessing pipeline to remove artefacts from the EEG data, a feature extraction method based on Riemannian geometry analysis of the cleaned EEG data, and a hybrid ensemble learning technique that combines the results of several machine learning classifiers. The proposed approach provides improved accuracy compared to existing methods, achieving an accuracy of 86% when tested on cleaned EEG data. The EEG dataset was collected from 18 pilots who participated in flight experiments and publicly released at NASA’s open portal. This study presents a reliable and efficient solution for detecting mental states in pilots and highlights the potential of EEG signals and ensemble learning algorithms in developing cognitive cockpit systems. The use of an automated preprocessing pipeline, feature extraction method based on Riemannian geometry analysis, and hybrid ensemble learning technique set this work apart from previous efforts in the field and demonstrates the innovative nature of the proposed approach

Recent Applications in Graph Theory

Graph theory, being a rigorously investigated field of combinatorial mathematics, is adopted by a wide variety of disciplines addressing a plethora of real-world applications. Advances in graph algorithms and software implementations have made graph theory accessible to a larger community of interest. Ever-increasing interest in machine learning and model deployments for network data demands a coherent selection of topics rewarding a fresh, up-to-date summary of the theory and fruitful applications to probe further. This volume is a small yet unique contribution to graph theory applications and modeling with graphs. The subjects discussed include information hiding using graphs, dynamic graph-based systems to model and control cyber-physical systems, graph reconstruction, average distance neighborhood graphs, and pure and mixed-integer linear programming formulations to cluster networks

Brain-Computer Interface

Brain-computer interfacing (BCI) with the use of advanced artificial intelligence identification is a rapidly growing new technology that allows a silently commanding brain to manipulate devices ranging from smartphones to advanced articulated robotic arms when physical control is not possible. BCI can be viewed as a collaboration between the brain and a device via the direct passage of electrical signals from neurons to an external system. The book provides a comprehensive summary of conventional and novel methods for processing brain signals. The chapters cover a range of topics including noninvasive and invasive signal acquisition, signal processing methods, deep learning approaches, and implementation of BCI in experimental problems

SANTIA: a Matlab-based open-source toolbox for artifact detection and removal from extracellular neuronal signals

Neuronal signals generally represent activation of the neuronal networks and give insights into brain functionalities. They are considered as fingerprints of actions and their processing across different structures of the brain. These recordings generate a large volume of data that are susceptible to noise and artifacts. Therefore, the review of these data to ensure high quality by automatically detecting and removing the artifacts is imperative. Toward this aim, this work proposes a custom-developed automatic artifact removal toolbox named, SANTIA (SigMate Advanced: a Novel Tool for Identification of Artifacts in Neuronal Signals). Developed in Matlab, SANTIA is an open-source toolbox that applies neural network-based machine learning techniques to label and train models to detect artifacts from the invasive neuronal signals known as local field potentials