68 research outputs found

    Machine Learning Approaches for Automated Glaucoma Detection using Clinical Data and Optical Coherence Tomography Images

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    Glaucoma is a multi-factorial, progressive blinding optic-neuropathy. A variety of factors, including genetics, vasculature, anatomy, and immune factors, are involved. Worldwide more than 80 million people are affected by glaucoma, and around 300,000 in Australia, where 50% remain undiagnosed. Untreated glaucoma can lead to blindness. Early detection by Artificial intelligence (AI) is crucial to accelerate the diagnosis process and can prevent further vision loss. Many proposed AI systems have shown promising performance for automated glaucoma detection using two-dimensional (2D) data. However, only a few studies had optimistic outcomes for glaucoma detection and staging. Moreover, the automated AI system still faces challenges in diagnosing at the cliniciansโ€™ level due to the lack of interpretability of the ML algorithms and integration of multiple clinical data. AI technology would be welcomed by doctors and patients if the "black box" notion is overcome by developing an explainable, transparent AI system with similar pathological markers used by clinicians as the sign of early detection and progression of glaucomatous damage. Therefore, the thesis aimed to develop a comprehensive AI model to detect and stage glaucoma by incorporating a variety of clinical data and utilising advanced data analysis and machine learning (ML) techniques. The research first focuses on optimising glaucoma diagnostic features by combining structural, functional, demographic, risk factor, and optical coherence tomography (OCT) features. The significant features were evaluated using statistical analysis and trained in ML algorithms to observe the detection performance. Three crucial structural ONH OCT features: cross-sectional 2D radial B-scan, 3D vascular angiography and temporal-superior-nasal-inferior-temporal (TSNIT) B-scan, were analysed and trained in explainable deep learning (DL) models for automated glaucoma prediction. The explanation behind the decision making of DL models were successfully demonstrated using the feature visualisation. The structural features or distinguished affected regions of TSNIT OCT scans were precisely localised for glaucoma patients. This is consistent with the concept of explainable DL, which refers to the idea of making the decision-making processes of DL models transparent and interpretable to humans. However, artifacts and speckle noise often result in misinterpretation of the TSNIT OCT scans. This research also developed an automated DL model to remove the artifacts and noise from the OCT scans, facilitating error-free retinal layers segmentation, accurate tissue thickness estimation and image interpretation. Moreover, to monitor and grade glaucoma severity, the visual field (VF) test is commonly followed by clinicians for treatment and management. Therefore, this research uses the functional features extracted from VF images to train ML algorithms for staging glaucoma from early to advanced/severe stages. Finally, the selected significant features were used to design and develop a comprehensive AI model to detect and grade glaucoma stages based on the data quantity and availability. In the first stage, a DL model was trained with TSNIT OCT scans, and its output was combined with significant structural and functional features and trained in ML models. The best-performed ML model achieved an area under the curve (AUC): 0.98, an accuracy of 97.2%, a sensitivity of 97.9%, and a specificity of 96.4% for detecting glaucoma. The model achieved an overall accuracy of 90.7% and an F1 score of 84.0% for classifying normal, early, moderate, and advanced-stage glaucoma. In conclusion, this thesis developed and proposed a comprehensive, evidence-based AI model that will solve the screening problem for large populations and relieve experts from manually analysing a slew of patient data and associated misinterpretation problems. Moreover, this thesis demonstrated three structural OCT features that could be added as excellent diagnostic markers for precise glaucoma diagnosis

    Clinical Applications of Artificial Intelligence in Glaucoma

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    Ophthalmology is one of the major imaging-intensive fields of medicine and thus has potential for extensive applications of artificial intelligence (AI) to advance diagnosis, drug efficacy, and other treatment-related aspects of ocular disease. AI has made impressive progress in ophthalmology within the past few years and two autonomous AIenabled systems have received US regulatory approvals for autonomously screening for mid-level or advanced diabetic retinopathy and macular edema. While no autonomous AI-enabled system for glaucoma screening has yet received US regulatory approval, numerous assistive AI-enabled software tools are already employed in commercialized instruments for quantifying retinal images and visual fields to augment glaucoma research and clinical practice. In this literature review (non-systematic), we provide an overview of AI applications in glaucoma, and highlight some limitations and considerations for AI integration and adoption into clinical practice

    Accelerating precision ophthalmology: recent advances

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    Introduction: The future of ophthalmology is precision medicine. With a growing incidence of lifestyle-associated ophthalmic disease such as diabetic retinopathy, the use of technology has the potential to overcome the burden on clinical specialists. Advances in precision medicine will help improve diagnosis and better triage those with higher clinical need to the appropriate experts, as well as providing a more tailored approach to treatment that could help transform patient management. Areas covered: A detailed literature review was conducted using OVID Medline and PubMed databases to explore advances in precision medicine within the areas of retinal disease, glaucoma, cornea, cataracts and uveitis. Over the last three years [2019โ€“2022] are explored, particularly discussing technological and genomic advances in screening, diagnosis, and management within these fields. Expert opinion: Artificial intelligence and its subspecialty deep learning provide the most substantial ways in which diagnosis and management of ocular diseases can be further developed within the advancing field of precision medicine. Future challenges include optimal training sets for algorithms and further developing pharmacogenetics in more specialized areas

    Deep Feature Fusion Network for Computer-aided Diagnosis of Glaucoma using Optical Coherence Tomography

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    ํ•™์œ„๋…ผ๋ฌธ (๋ฐ•์‚ฌ)-- ์„œ์šธ๋Œ€ํ•™๊ต ๋Œ€ํ•™์› ๊ณต๊ณผ๋Œ€ํ•™ ํ˜‘๋™๊ณผ์ • ๋ฐ”์ด์˜ค์—”์ง€๋‹ˆ์–ด๋ง์ „๊ณต, 2017. 8. ๊น€ํฌ์ฐฌ.Glaucoma has been able to be diagnosed noninvasively by analyzing the optic disc thickness with the development of optical coherence tomography. However, it is essential to maintain proper intraocular pressure through early diagnosis of glaucoma. Therefore, it is required to develop a computer-aided diagnosis system to accurately and objectively analyze glaucoma of early stage. In this paper, we propose deep feature fusion network for realizing computer-aided system which can accurately diagnose early glaucoma and verify the clinical efficacy through performance evaluation using patient images. Deep feature fusion network is analyzed by fusing features which are extracted by feature-based classification used in machine learning and by deep learning in deep neural network. Deep feature fusion network is deep neural network composed of heterogeneous features extracted through image processing and deep learning. The area and depth features of optic nerve defects related to glaucoma were extracted by using traditional image processing methods and the features related to distinction between glaucoma and normal subjects were extracted from the middle layer output of the deep neural network. Deep feature fusion network was developed by fusing extracted features. We analyzed features based on image processing using thickness map and deviation map of retinal nerve fiber layer and ganglion cell inner plexiform layer in order to extract features related to the area of the optic nerve defects. Optic nerve defects were segmented in each deviation map by three criteria and the area of the defects was calculated about 69 glaucoma patients and 79 normal subjects. The performance of the severity indices calculated by defects area was evaluated by the area under ROC curve (AUC). There were significant differences between glaucoma patients and normal subjects in all severity indices (p < 0.0001) and correctly distinguished between glaucoma patients and normal subjects (AUC = 0.91 to 0.95). This suggests that the area features of optic nerve defects can be used as an objective indicator of glaucoma diagnosis. We analyzed features based on another image processing using retinal nerve fiber layer thickness map and deviation map to extract the features related to the depth of the optic nerve defects. Depth related index was developed by using the ratio of the optic nerve thickness of the normal to the optic nerve thickness in the optic nerve defects analyzed by the deviation map. 108 early glaucoma patients, 96 moderate glaucoma patients, and 111 severe glaucoma patients were analyzed by using depth index and the performance was evaluated by AUC. There were significant differences between the groups in the index (p < 0.001) and the index discriminated between moderate glaucoma patients and severe glaucoma patients (AUC = 0.97) as well as early glaucoma patients and moderate glaucoma patients (AUC = 0.98). It was found that the depth index of the optic nerve defects were a significant feature to distinguish the degree of glaucoma. Two methods were used to apply thickness map to deep learning. One method is deep learning using randomly distributed weights in LeNet and the other method is deep learning using weights pre-trained by other large image data in VGGNet. We analyzed two methods for 316 normal subjects, 226 glaucoma patients of early stage, and 246 glaucoma patients of moderate and severe stage and evaluated performance through AUC for each groups. Deep neural networks learned with LeNet and VGGNet distinguished normal subjects not only from glaucoma patients (AUC = 0.94, 0.94), but also from glaucoma patients of early stage (AUC = 0.88, 0.89). It was found that two deep learning methods extract the features related to glaucoma. Finally, we developed deep feature fusion network by fusing the features extracted from image processing and the features extracted by deep learning and compared the performance with the previous studies though AUC. Deep feature fusion network fusing the features extracted in VGGNet correctly distinguished normal subjects not only from glaucoma patients (AUC = 0.96), but also from glaucoma patients of early stage (AUC = 0.92). This network is superior to the previous study (AUC = 0.91, 0.82). It showed excellent performance in distinguishing early glaucoma patients from normal subjects particularly. These results show that the proposed deep feature fusion network provides higher accuracy in diagnosis and early diagnosis of glaucoma than any other previous methods. It is expected that further accuracy of the features will be improved if additional features of demographic information and various glaucoma test results are added to deep feature fusion network. Deep feature fusion network proposed in this paper is expected to be applicable not only to early diagnosis of glaucoma but also to analyze progress of glaucoma.Chapter 1 : General Introduction 1 1.1. Glaucoma 2 1.2. Optical Coherence Tomography 5 1.3. Thesis Objectives 7 Chapter 2 : Feature Extraction for Glaucoma Diagnosis 1. Severity Index of Macular GCIPL and Peripapillary RNFL Deviation Maps 9 2.1. Introduction 10 2.2. Methods 12 2.2.1. Study subjects 12 2.2.2. Red-free RNFL photography 14 2.2.3. Cirrus OCT imaging 15 2.2.4. Deviation map analysis protocol 17 2.2.5. Statistical analysis 21 2.3. Results 23 2.4. Discussion 33 Chapter 3 : Feature Extraction for Glaucoma Diagnosis 2. RNFL Defect Depth Percentage Index of Thickness Deviation Maps 41 3.1. Introduction 42 3.2. Methods 44 3.2.1. Subjects 44 3.2.2. Red-free fundus photography imaging 46 3.2.3. Optical coherence tomography retinal nerve fiber layer imaging 51 3.2.4. Measuring depth of retinal nerve fiber layer defects on cirrus high-definition optical coherence tomography derived deviation map 52 3.2.5. Data analysis 57 3.3. Results 58 3.4. Discussion 69 Chapter 4 : Glaucoma Classification using Deep Feature Fusion Network 74 4.1. Introduction 75 4.2. Methods 77 4.2.1. Study subjects 77 4.2.2. OCT imaging 79 4.2.3. Deep Feature Fusion Network 81 4.2.4. Statistical analysis 88 4.3. Results 90 4.4. Discussion 105 Chapter 5 : Thesis Summary and Future Work 111 5.1 Thesis Summary and Contribution 112 5.2 Future Work 115 Bibliography 117 Abstract in Korean 125Docto

    ๋”ฅ๋Ÿฌ๋‹์„ ์ด์šฉํ•œ ๋…น๋‚ด์žฅ ์ง„๋‹จ ๋ณด์กฐ ์‹œ์Šคํ…œ

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    ํ•™์œ„๋…ผ๋ฌธ (๋ฐ•์‚ฌ) -- ์„œ์šธ๋Œ€ํ•™๊ต ๋Œ€ํ•™์› : ๊ณต๊ณผ๋Œ€ํ•™ ํ˜‘๋™๊ณผ์ • ๋ฐ”์ด์˜ค์—”์ง€๋‹ˆ์–ด๋ง์ „๊ณต, 2021. 2. ๊น€ํฌ์ฐฌ.๋ณธ ๋…ผ๋ฌธ์—์„œ๋Š” ๋”ฅ ๋Ÿฌ๋‹ ๊ธฐ๋ฐ˜์˜ ์ง„๋‹จ ๋ณด์กฐ ์‹œ์Šคํ…œ์„ ์ œ์•ˆํ•˜์˜€๋‹ค. ์ƒˆ๋กœ์šด ๋ฐฉ๋ฒ•์ด ๋…น๋‚ด์žฅ ๋ฐ์ดํ„ฐ์— ์ ์šฉ๋˜์—ˆ๊ณ  ๊ฒฐ๊ณผ๋ฅผ ํ‰๊ฐ€ํ•˜์˜€๋‹ค. ์ฒซ๋ฒˆ์งธ ์—ฐ๊ตฌ์—์„œ๋Š” ์ŠคํŽ™ํŠธ๋Ÿผ์˜์—ญ ๋น›๊ฐ„์„ญ๋‹จ์ธต์ดฌ์˜๊ธฐ(SD-OCT)๋ฅผ ๋”ฅ ๋Ÿฌ๋‹ ๋ถ„๋ฅ˜ ๊ธฐ๋ฅผ ์ด์šฉํ•ด ๋ถ„์„ํ•˜์˜€๋‹ค. ์ŠคํŽ™ํŠธ๋Ÿผ์˜์—ญ ๋น›๊ฐ„์„ญ๋‹จ์ธต์ดฌ์˜๊ธฐ๋Š” ๋…น๋‚ด์žฅ์œผ๋กœ ์ธํ•œ ๊ตฌ์กฐ์  ์†์ƒ์„ ํ‰๊ฐ€ํ•˜๊ธฐ ์œ„ํ•ด ์‚ฌ์šฉํ•˜๋Š” ์žฅ๋น„์ด๋‹ค. ๋ถ„๋ฅ˜ ์•Œ๊ณ ๋ฆฌ์ฆ˜์€ ํ•ฉ์„ฑ ๊ณฑ ์‹ ๊ฒฝ๋ง์„ ์ด์šฉํ•ด ๊ฐœ๋ฐœ ๋˜์—ˆ์œผ๋ฉฐ, ์ŠคํŽ™ํŠธ๋Ÿผ์˜์—ญ ๋น›๊ฐ„์„ญ๋‹จ์ธต์ดฌ์˜๊ธฐ์˜ ๋ง๋ง‰์‹ ๊ฒฝ์„ฌ์œ ์ธต(RNFL)๊ณผ ํ™ฉ๋ฐ˜๋ถ€ ์‹ ๊ฒฝ์ ˆ์„ธํฌ๋‚ด๋ง์ƒ์ธต (GCIPL) ์‚ฌ์ง„์„ ์ด์šฉํ•ด ํ•™์Šตํ–ˆ๋‹ค. ์ œ์•ˆํ•œ ๋ฐฉ๋ฒ•์€ ๋‘๊ฐœ์˜ ์ด๋ฏธ์ง€๋ฅผ ์ž…๋ ฅ์œผ๋กœ ๋ฐ›๋Š” ์ด์ค‘์ž…๋ ฅํ•ฉ์„ฑ๊ณฑ์‹ ๊ฒฝ๋ง(DICNN)์ด๋ฉฐ, ๋”ฅ ๋Ÿฌ๋‹ ๋ถ„๋ฅ˜์—์„œ ํšจ๊ณผ์ ์ธ ๊ฒƒ์œผ๋กœ ์•Œ๋ ค์ ธ ์žˆ๋‹ค. ์ด์ค‘์ž…๋ ฅํ•ฉ์„ฑ๊ณฑ์‹ ๊ฒฝ๋ง์€ ๋ง๋ง‰์‹ ๊ฒฝ์„ฌ์œ ์ธต ๊ณผ ์‹ ๊ฒฝ์ ˆ์„ธํฌ์ธต ์˜ ๋‘๊ป˜ ์ง€๋„๋ฅผ ์ด์šฉํ•˜์—ฌ ํ•™์Šต ๋์œผ๋ฉฐ, ํ•™์Šต๋œ ๋„คํŠธ์›Œํฌ๋Š” ๋…น๋‚ด์žฅ๊ณผ ์ •์ƒ ๊ตฐ์„ ๊ตฌ๋ถ„ํ•œ๋‹ค. ์ด์ค‘์ž…๋ ฅํ•ฉ์„ฑ๊ณฑ์‹ ๊ฒฝ๋ง์€ ์ •ํ™•๋„์™€ ์ˆ˜์‹ ๊ธฐ๋™์ž‘ํŠน์„ฑ๊ณก์„ ํ•˜๋ฉด์  (AUC)์œผ๋กœ ํ‰๊ฐ€ ๋˜์—ˆ๋‹ค. ๋ง๋ง‰์‹ ๊ฒฝ์„ฌ์œ ์ธต๊ณผ ์‹ ๊ฒฝ์ ˆ์„ธํฌ์ธต ๋‘๊ป˜ ์ง€๋„๋กœ ํ•™์Šต๋œ ์„ค๊ณ„ํ•œ ๋”ฅ ๋Ÿฌ๋‹ ๋ชจ๋ธ์„ ์กฐ๊ธฐ ๋…น๋‚ด์žฅ๊ณผ ์ •์ƒ ๊ตฐ์„ ๋ถ„๋ฅ˜ํ•˜๋Š” ์„ฑ๋Šฅ์„ ํ‰๊ฐ€ํ•˜๊ณ  ๋น„๊ตํ•˜์˜€๋‹ค. ์„ฑ๋Šฅํ‰๊ฐ€ ๊ฒฐ๊ณผ ์ด์ค‘์ž…๋ ฅํ•ฉ์„ฑ๊ณฑ์‹ ๊ฒฝ๋ง์€ ์กฐ๊ธฐ ๋…น๋‚ด์žฅ์„ ๋ถ„๋ฅ˜ํ•˜๋Š”๋ฐ 0.869์˜ ์ˆ˜์‹ ๊ธฐ๋™์ž‘ํŠน์„ฑ๊ณก์„ ์˜๋„“์ด์™€ 0.921์˜ ๋ฏผ๊ฐ๋„, 0.756์˜ ํŠน์ด๋„๋ฅผ ๋ณด์˜€๋‹ค. ๋‘๋ฒˆ์งธ ์—ฐ๊ตฌ์—์„œ๋Š” ๋”ฅ ๋Ÿฌ๋‹์„ ์ด์šฉํ•ด ์‹œ์‹ ๊ฒฝ์œ ๋‘์‚ฌ์ง„์˜ ํ•ด์ƒ๋„์™€ ๋Œ€๋น„, ์ƒ‰๊ฐ, ๋ฐ๊ธฐ๋ฅผ ๋ณด์ •ํ•˜๋Š” ๋ฐฉ๋ฒ•์„ ์ œ์•ˆํ•˜์˜€๋‹ค. ์‹œ์‹ ๊ฒฝ์œ ๋‘์‚ฌ์ง„์€ ๋…น๋‚ด์žฅ์„ ์ง„๋‹จํ•˜๋Š”๋ฐ ์žˆ์–ด ํšจ๊ณผ์ ์ธ ๊ฒƒ์œผ๋กœ ์•Œ๋ ค์ ธ ์žˆ๋‹ค. ํ•˜์ง€๋งŒ, ๋…น๋‚ด์žฅ์˜ ์ง„๋‹จ์—์„œ ํ™˜์ž์˜ ๋‚˜, ์ž‘์€ ๋™๊ณต, ๋งค์ฒด ๋ถˆํˆฌ๋ช…์„ฑ ๋“ฑ์œผ๋กœ ์ธํ•ด ํ‰๊ฐ€๊ฐ€ ์–ด๋ ค์šด ๊ฒฝ์šฐ๊ฐ€ ์žˆ๋‹ค. ์ดˆ ํ•ด์ƒ๋„์™€ ๋ณด์ • ์•Œ๊ณ ๋ฆฌ์ฆ˜์€ ์ดˆ ํ•ด์ƒ๋„ ์ ๋Œ€์ ์ƒ์„ฑ์‹ ๊ฒฝ๋ง์„ ํ†ตํ•ด ๊ฐœ๋ฐœ๋˜์—ˆ๋‹ค. ์›๋ณธ ๊ณ ํ•ด์ƒ๋„์˜ ์‹œ์‹ ๊ฒฝ ์œ ๋‘ ์‚ฌ์ง„์€ ์ €ํ•ด์ƒ๋„ ์‚ฌ์ง„์œผ๋กœ ์ถ•์†Œ๋˜๊ณ , ๋ณด์ •๋œ ๊ณ ํ•ด์ƒ๋„ ์‹œ์‹ ๊ฒฝ์œ ๋‘์‚ฌ์ง„์œผ๋กœ ๋ณด์ • ๋˜๋ฉฐ, ๋ณด์ •๋œ ์‚ฌ์ง„์€ ์‹œ์‹ ๊ฒฝ์—ฌ๋ฐฑ์˜ ๊ฐ€์‹œ์„ฑ๊ณผ ๊ทผ์ฒ˜ ํ˜ˆ๊ด€์„ ์ž˜ ๋ณด์ด๋„๋ก ํ›„์ฒ˜๋ฆฌ ์•Œ๊ณ ๋ฆฌ์ฆ˜์„ ์ด์šฉํ•œ๋‹ค. ์ €ํ•ด์ƒ๋„์ด๋ฏธ์ง€๋ฅผ ๋ณด์ •๋œ ๊ณ ํ•ด์ƒ๋„์ด๋ฏธ์ง€๋กœ ๋ณต์›ํ•˜๋Š” ๊ณผ์ •์„ ์ดˆํ•ด์ƒ๋„์ ๋Œ€์ ์‹ ๊ฒฝ๋ง์„ ํ†ตํ•ด ํ•™์Šตํ•œ๋‹ค. ์„ค๊ณ„ํ•œ ๋„คํŠธ์›Œํฌ๋Š” ์‹ ํ˜ธ ๋Œ€ ์žก์Œ ๋น„(PSNR)๊ณผ ๊ตฌ์กฐ์ ์œ ์‚ฌ์„ฑ(SSIM), ํ‰๊ท ํ‰๊ฐ€์ (MOS)๋ฅผ ์ด์šฉํ•ด ํ‰๊ฐ€ ๋˜์—ˆ๋‹ค. ํ˜„์žฌ์˜ ์—ฐ๊ตฌ๋Š” ๋”ฅ ๋Ÿฌ๋‹์ด ์•ˆ๊ณผ ์ด๋ฏธ์ง€๋ฅผ 4๋ฐฐ ํ•ด์ƒ๋„์™€ ๊ตฌ์กฐ์ ์ธ ์„ธ๋ถ€ ํ•ญ๋ชฉ์ด ์ž˜ ๋ณด์ด๋„๋ก ๊ฐœ์„ ํ•  ์ˆ˜ ์žˆ๋‹ค๋Š” ๊ฒƒ์„ ๋ณด์—ฌ์ฃผ์—ˆ๋‹ค. ํ–ฅ์ƒ๋œ ์‹œ์‹ ๊ฒฝ์œ ๋‘ ์‚ฌ์ง„์€ ์‹œ์‹ ๊ฒฝ์˜ ๋ณ‘๋ฆฌํ•™์ ์ธ ํŠน์„ฑ์˜ ์ง„๋‹จ ์ •ํ™•๋„๋ฅผ ๋ช…ํ™•ํžˆ ํ–ฅ์ƒ์‹œํ‚จ๋‹ค. ์„ฑ๋Šฅํ‰๊ฐ€๊ฒฐ๊ณผ ํ‰๊ท  PSNR์€ 25.01 SSIM์€ 0.75 MOS๋Š” 4.33์œผ๋กœ ๋‚˜ํƒ€๋‚ฌ๋‹ค. ์„ธ๋ฒˆ์งธ ์—ฐ๊ตฌ์—์„œ๋Š” ํ™˜์ž ์ •๋ณด์™€ ์•ˆ๊ณผ ์˜์ƒ(์‹œ์‹ ๊ฒฝ์œ ๋‘ ์‚ฌ์ง„๊ณผ ๋ถ‰์€์ƒ‰์ด ์—†๋Š” ๋ง๋ง‰์‹ ๊ฒฝ์„ฌ์œ ์ธต ์‚ฌ์ง„)์„ ์ด์šฉํ•ด ๋…น๋‚ด์žฅ ์˜์‹ฌ ํ™˜์ž๋ฅผ ๋ถ„๋ณ„ํ•˜๊ณ  ๋…น๋‚ด์žฅ ์˜์‹ฌ ํ™˜์ž์˜ ๋ฐœ๋ณ‘ ์—ฐ์ˆ˜๋ฅผ ์˜ˆ์ธกํ•˜๋Š” ๋”ฅ ๋Ÿฌ๋‹ ๋ชจ๋ธ์„ ๊ฐœ๋ฐœํ•˜์˜€๋‹ค. ์ž„์ƒ ๋ฐ์ดํ„ฐ๋“ค์€ ๋…น๋‚ด์žฅ์„ ์ง„๋‹จํ•˜๊ฑฐ๋‚˜ ์˜ˆ์ธกํ•˜๋Š”๋ฐ ์œ ์šฉํ•œ ์ •๋ณด๋“ค์„ ๊ฐ€์ง€๊ณ  ์žˆ๋‹ค. ํ•˜์ง€๋งŒ, ์–ด๋–ป๊ฒŒ ๋‹ค์–‘ํ•œ ์œ ํ˜•์˜ ์ž„์ƒ์ •๋ณด๋“ค์„ ์กฐํ•ฉํ•˜๋Š” ๊ฒƒ์ด ๊ฐ๊ฐ์˜ ํ™˜์ž๋“ค์— ๋Œ€ํ•ด ์ž ์žฌ์ ์ธ ๋…น๋‚ด์žฅ์„ ์˜ˆ์ธกํ•˜๋Š”๋ฐ ์–ด๋–ค ์˜ํ–ฅ์„ ์ฃผ๋Š”์ง€์— ๋Œ€ํ•œ ์—ฐ๊ตฌ๊ฐ€ ์ง„ํ–‰ ๋œ ์ ์ด ์—†๋‹ค. ๋…น๋‚ด์žฅ ์˜ ์‹ฌ์ž ๋ถ„๋ฅ˜์™€ ๋ฐœ๋ณ‘ ๋…„ ์ˆ˜ ์˜ˆ์ธก์€ ํ•ฉ์„ฑ ๊ณฑ ์ž๋™ ์ธ์ฝ”๋”(CAE)๋ฅผ ๋น„ ์ง€๋„์  ํŠน์„ฑ ์ถ”์ถœ ๊ธฐ๋กœ ์‚ฌ์šฉํ•˜๊ณ , ๊ธฐ๊ณ„ํ•™์Šต ๋ถ„๋ฅ˜ ๊ธฐ์™€ ํšŒ๊ท€๊ธฐ๋ฅผ ํ†ตํ•ด ์ง„ํ–‰ํ•˜์˜€๋‹ค. ์„ค๊ณ„ํ•œ ๋ชจ๋ธ์€ ์ •ํ™•๋„์™€ ํ‰๊ท ์ œ๊ณฑ์˜ค์ฐจ(MSE)๋ฅผ ํ†ตํ•ด ํ‰๊ฐ€ ๋˜์—ˆ์œผ๋ฉฐ, ์ด๋ฏธ์ง€ ํŠน์ง•๊ณผ ํ™˜์ž ํŠน์ง•์€ ์กฐํ•ฉํ–ˆ์„ ๋•Œ ๋…น๋‚ด์žฅ ์˜์‹ฌ ํ™˜์ž ๋ถ„๋ฅ˜์™€ ๋ฐœ๋ณ‘ ๋…„ ์ˆ˜ ์˜ˆ์ธก์˜ ์„ฑ๋Šฅ์ด ์ด๋ฏธ์ง€ ํŠน์ง•๊ณผ ํ™˜์ž ํŠน์ง•์„ ๊ฐ๊ฐ ์ผ์„ ๋•Œ๋ณด๋‹ค ์„ฑ๋Šฅ์ด ์ข‹์•˜๋‹ค. ์ •๋‹ต๊ณผ์˜ MSE๋Š” 2.613์œผ๋กœ ๋‚˜ํƒ€๋‚ฌ๋‹ค. ๋ณธ ์—ฐ๊ตฌ์—์„œ๋Š” ๋”ฅ ๋Ÿฌ๋‹์„ ์ด์šฉํ•ด ๋…น๋‚ด์žฅ ๊ด€๋ จ ์ž„์ƒ ๋ฐ์ดํ„ฐ ์ค‘ ๋ง๋ง‰์‹ ๊ฒฝ์„ฌ์œ ์ธต, ์‹ ๊ฒฝ์ ˆ์„ธํฌ์ธต ์‚ฌ์ง„์„ ๋…น๋‚ด์žฅ ์ง„๋‹จ์— ์ด์šฉ๋˜์—ˆ๊ณ , ์‹œ์‹ ๊ฒฝ์œ ๋‘ ์‚ฌ์ง„์€ ์‹œ์‹ ๊ฒฝ์˜ ๋ณ‘๋ฆฌํ•™์ ์ธ ์ง„๋‹จ ์ •ํ™•๋„๋ฅผ ๋†’์˜€๊ณ , ํ™˜์ž ์ •๋ณด๋Š” ๋ณด๋‹ค ์ •ํ™•ํ•œ ๋…น๋‚ด์žฅ ์˜์‹ฌ ํ™˜์ž ๋ถ„๋ฅ˜์™€ ๋ฐœ๋ณ‘ ๋…„ ์ˆ˜ ์˜ˆ์ธก์— ์ด์šฉ๋˜์—ˆ๋‹ค. ํ–ฅ์ƒ๋œ ๋…น๋‚ด์žฅ ์ง„๋‹จ ์„ฑ๋Šฅ์€ ๊ธฐ์ˆ ์ ์ด๊ณ  ์ž„์ƒ์ ์ธ ์ง€ํ‘œ๋“ค์„ ํ†ตํ•ด ๊ฒ€์ฆ๋˜์—ˆ๋‹ค.This paper presents deep learning-based methods for improving glaucoma diagnosis support systems. Novel methods were applied to glaucoma clinical cases and the results were evaluated. In the first study, a deep learning classifier for glaucoma diagnosis based on spectral-domain optical coherence tomography (SD-OCT) images was proposed and evaluated. Spectral-domain optical coherence tomography (SD-OCT) is commonly employed as an imaging modality for the evaluation of glaucomatous structural damage. The classification model was developed using convolutional neural network (CNN) as a base, and was trained with SD-OCT retinal nerve fiber layer (RNFL) and macular ganglion cell-inner plexiform layer (GCIPL) images. The proposed network architecture, termed Dual-Input Convolutional Neural Network (DICNN), showed great potential as an effective classification algorithm based on two input images. DICNN was trained with both RNFL and GCIPL thickness maps that enabled it to discriminate between normal and glaucomatous eyes. The performance of the proposed DICNN was evaluated with accuracy and area under the receiver operating characteristic curve (AUC), and was compared to other methods using these metrics. Compared to other methods, the proposed DICNN model demonstrated high diagnostic ability for the discrimination of early-stage glaucoma patients in normal subjects. AUC, sensitivity and specificity was 0.869, 0.921, 0.756 respectively. In the second study, a deep-learning method for increasing the resolution and improving the legibility of Optic-disc Photography(ODP) was proposed. ODP has been proven to be useful for optic nerve evaluation in glaucoma. But in clinical practice, limited patient cooperation, small pupil or media opacities can limit the performance of ODP. A model to enhance the resolution of ODP images, termed super-resolution, was developed using Super Resolution Generative Adversarial Network(SR-GAN). To train this model, high-resolution original ODP images were transformed into two counterparts: (1) down-scaled low-resolution ODPs, and (2) compensated high-resolution ODPs with enhanced visibility of the optic disc margin and surrounding retinal vessels which were produced using a customized image post-processing algorithm. The SR-GAN was trained to learn and recognize the differences between these two counterparts. The performance of the network was evaluated using Peak Signal to Noise Ratio (PSNR), Structural Similarity (SSIM), and Mean Opinion Score (MOS). The proposed study demonstrated that deep learning can be applied to create a generative model that is capable of producing enhanced ophthalmic images with 4x resolution and with improved structural details. The proposed method can be used to enhance ODPs and thereby significantly increase the detection accuracy of optic disc pathology. The average PSNR, SSIM and MOS was 25.01, 0.75, 4.33 respectively In the third study, a deep-learning model was used to classify suspected glaucoma and to predict subsequent glaucoma onset-year in glaucoma suspects using clinical data and retinal images (ODP & Red-free Fundus RNFL Photo). Clinical data contains useful information about glaucoma diagnosis and prediction. However, no study has been undertaken to investigate how combining different types of clinical information would be helpful for predicting the subsequent course of glaucoma in an individual patient. For this study, image features extracted using Convolutional Auto Encoder (CAE) along with clinical features were used for glaucoma suspect classification and onset-year prediction. The performance of the proposed model was evaluated using accuracy and Mean Squared Error (MSE). Combing the CAE extracted image features and clinical features improved glaucoma suspect classification and on-set year prediction performance as compared to using the image features and patient features separately. The average MSE between onset-year and predicted onset year was 2.613 In this study, deep learning methodology was applied to clinical images related to glaucoma. DICNN with RNFL and GCIPL images were used for classification of glaucoma, SR-GAN with ODP images were used to increase detection accuracy of optic disc pathology, and CAE & machine learning algorithm with clinical data and retinal images was used for glaucoma suspect classification and onset-year predication. The improved glaucoma diagnosis performance was validated using both technical and clinical parameters. The proposed methods as a whole can significantly improve outcomes of glaucoma patients by early detection, prediction and enhancing detection accuracy.Contents Abstract i Contents iv List of Tables vii List of Figures viii Chapter 1 General Introduction 1 1.1 Glaucoma 1 1.2 Deep Learning for Glaucoma Diagnosis 3 1.4 Thesis Objectives 3 Chapter 2 Dual-Input Convolutional Neural Network for Glaucoma Diagnosis using Spectral-Domain Optical Coherence Tomography 6 2.1 Introduction 6 2.1.1 Background 6 2.1.2 Related Work 7 2.2 Methods 8 2.2.1 Study Design 8 2.2.2 Dataset 9 2.2.3 Dual-Input Convolutional Neural Network (DICNN) 15 2.2.4 Training Environment 18 2.2.5 Statistical Analysis 19 2.3 Results 20 2.3.1 DICNN Performance 20 2.3.1 Grad-CAM for DICNN 34 2.4 Discussion 37 2.4.1 Research Significance 37 2.4.2 Limitations 40 2.5 Conclusion 42 Chapter 3 Deep-learning-based enhanced optic-disc photography 43 3.1 Introduction 43 3.1.1 Background 43 3.1.2 Needs 44 3.1.3 Related Work 45 3.2 Methods 46 3.2.1 Study Design 46 3.2.2 Dataset 46 3.2.2.1 Details on Customized Image Post-Processing Algorithm 47 3.2.3 SR-GAN Network 50 3.2.3.1 Design of Generative Adversarial Network 50 3.2.3.2 Loss Functions 55 3.2.4 Assessment of Clinical Implications of Enhanced ODPs 58 3.2.5 Statistical Analysis 60 3.2.6 Hardware Specifications & Software Specifications 60 3.3 Results 62 3.3.1 Training Loss of Modified SR-GAN 62 3.3.2 Performance of Final Network 66 3.3.3 Clinical Validation of Enhanced ODP by MOS comparison 77 3.3.4 Comparison of DH-Detection Accuracy 79 3.4 Discussion 80 3.4.1 Research Significance 80 3.4.2 Limitations 85 3.5 Conclusion 88 Chapter 4 Deep Learning Based Prediction of Glaucoma Onset Using Retinal Image and Patient Data 89 4.1 Introduction 89 4.1.1 Background 89 4.1.2 Related Work 90 4.2 Methods 90 4.2.1 Study Design 90 4.2.2 Dataset 91 4.2.3 Design of Overall System 94 4.2.4 Design of Convolutional Auto Encoder 95 4.2.5 Glaucoma Suspect Classification 97 4.2.6 Glaucoma Onset-Year Prediction 97 4.3 Result 99 4.3.1 Performance of Designed CAE 99 4.3.2 Performance of Designed Glaucoma Suspect Classification 101 4.3.3 Performance of Designed Glaucoma Onset-Year Prediction 105 4.4 Discussion 110 4.4.1 Research Significance 110 4.4.2 Limitations 110 4.5 Conclusion 111 Chapter 5 Summary and Future Works 112 5.1 Thesis Summary 112 5.2 Limitations and Future Works 113 Bibliography 115 Abstract in Korean 127 Acknowledgement 130Docto

    REFUGE Challenge: A unified framework for evaluating automated methods for glaucoma assessment from fundus photographs

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    [EN] Glaucoma is one of the leading causes of irreversible but preventable blindness in working age populations. Color fundus photography (CFP) is the most cost-effective imaging modality to screen for retinal disorders. However, its application to glaucoma has been limited to the computation of a few related biomarkers such as the vertical cup-to-disc ratio. Deep learning approaches, although widely applied for medical image analysis, have not been extensively used for glaucoma assessment due to the limited size of the available data sets. Furthermore, the lack of a standardize benchmark strategy makes difficult to compare existing methods in a uniform way. In order to overcome these issues we set up the Retinal Fundus Glaucoma Challenge, REFUGE (https://refuge.grand-challenge.org), held in conjunction with MIC-CAI 2018. The challenge consisted of two primary tasks, namely optic disc/cup segmentation and glaucoma classification. As part of REFUGE, we have publicly released a data set of 1200 fundus images with ground truth segmentations and clinical glaucoma labels, currently the largest existing one. We have also built an evaluation framework to ease and ensure fairness in the comparison of different models, encouraging the development of novel techniques in the field. 12 teams qualified and participated in the online challenge. This paper summarizes their methods and analyzes their corresponding results. In particular, we observed that two of the top-ranked teams outperformed two human experts in the glaucoma classification task. Furthermore, the segmentation results were in general consistent with the ground truth annotations, with complementary outcomes that can be further exploited by ensembling the results.This work was supported by the Christian Doppler Research Association, the Austrian Federal Ministry for Digital and Economic Affairs and the National Foundation for Research, Technology and Development, J.I.O is supported by WWTF (Medical University of Vienna: AugUniWien/FA7464A0249, University of Vienna: VRG12- 009). Team Masker is supported by Natural Science Foundation of Guangdong Province of China (Grant 2017A030310647). Team BUCT is partially supported by the National Natural Science Foundation of China (Grant 11571031). The authors would also like to thank REFUGE study group for collaborating with this challenge.Orlando, JI.; Fu, H.; Breda, JB.; Van Keer, K.; Bathula, DR.; Diaz-Pinto, A.; Fang, R.... (2020). 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    Deep learning in ophthalmology: The technical and clinical considerations

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    The advent of computer graphic processing units, improvement in mathematical models and availability of big data has allowed artificial intelligence (AI) using machine learning (ML) and deep learning (DL) techniques to achieve robust performance for broad applications in social-media, the internet of things, the automotive industry and healthcare. DL systems in particular provide improved capability in image, speech and motion recognition as well as in natural language processing. In medicine, significant progress of AI and DL systems has been demonstrated in image-centric specialties such as radiology, dermatology, pathology and ophthalmology. New studies, including pre-registered prospective clinical trials, have shown DL systems are accurate and effective in detecting diabetic retinopathy (DR), glaucoma, age-related macular degeneration (AMD), retinopathy of prematurity, refractive error and in identifying cardiovascular risk factors and diseases, from digital fundus photographs. There is also increasing attention on the use of AI and DL systems in identifying disease features, progression and treatment response for retinal diseases such as neovascular AMD and diabetic macular edema using optical coherence tomography (OCT). Additionally, the application of ML to visual fields may be useful in detecting glaucoma progression. There are limited studies that incorporate clinical data including electronic health records, in AL and DL algorithms, and no prospective studies to demonstrate that AI and DL algorithms can predict the development of clinical eye disease. This article describes global eye disease burden, unmet needs and common conditions of public health importance for which AI and DL systems may be applicable. Technical and clinical aspects to build a DL system to address those needs, and the potential challenges for clinical adoption are discussed. AI, ML and DL will likely play a crucial role in clinical ophthalmology practice, with implications for screening, diagnosis and follow up of the major causes of vision impairment in the setting of ageing populations globally

    Machine Learning Techniques, Detection and Prediction of Glaucomaโ€“ A Systematic Review

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    Globally, glaucoma is the most common factor in both permanent blindness and impairment. However, the majority of patients are unaware they have the condition, and clinical practise continues to face difficulties in detecting glaucoma progression using current technology. An expert ophthalmologist examines the retinal portion of the eye to see how the glaucoma is progressing. This method is quite time-consuming, and doing it manually takes more time. Therefore, using deep learning and machine learning techniques, this problem can be resolved by automatically diagnosing glaucoma. This systematic review involved a comprehensive analysis of various automated glaucoma prediction and detection techniques. More than 100 articles on Machine learning (ML) techniques with understandable graph and tabular column are reviewed considering summery, method, objective, performance, advantages and disadvantages. In the ML techniques such as support vector machine (SVM), and K-means. Fuzzy c-means clustering algorithm are widely used in glaucoma detection and prediction. Through the systematic review, the most accurate technique to detect and predict glaucoma can be determined which can be utilized for future betterment
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