Automated identification of Monogeneans using digital image processing and K-nearest neighbour approaches.

BACKGROUND: Monogeneans are flatworms (Platyhelminthes) that are primarily found on gills and skin of fishes. Monogenean parasites have attachment appendages at their haptoral regions that help them to move about the body surface and feed on skin and gill debris. Haptoral attachment organs consist of sclerotized hard parts such as hooks, anchors and marginal hooks. Monogenean species are differentiated based on their haptoral bars, anchors, marginal hooks, reproductive parts' (male and female copulatory organs) morphological characters and soft anatomical parts. The complex structure of these diagnostic organs and also their overlapping in microscopic digital images are impediments for developing fully automated identification system for monogeneans (LNCS 7666:256-263, 2012), (ISDA; 457-462, 2011), (J Zoolog Syst Evol Res 52(2): 95-99. 2013;). In this study images of hard parts of the haptoral organs such as bars and anchors are used to develop a fully automated identification technique for monogenean species identification by implementing image processing techniques and machine learning methods. RESULT: Images of four monogenean species namely Sinodiplectanotrema malayanus, Trianchoratus pahangensis, Metahaliotrema mizellei and Metahaliotrema sp. (undescribed) were used to develop an automated technique for identification. K-nearest neighbour (KNN) was applied to classify the monogenean specimens based on the extracted features. 50% of the dataset was used for training and the other 50% was used as testing for system evaluation. Our approach demonstrated overall classification accuracy of 90%. In this study Leave One Out (LOO) cross validation is used for validation of our system and the accuracy is 91.25%. CONCLUSIONS: The methods presented in this study facilitate fast and accurate fully automated classification of monogeneans at the species level. In future studies more classes will be included in the model, the time to capture the monogenean images will be reduced and improvements in extraction and selection of features will be implemented

How automated image analysis techniques help scientists in species identification and classification?

Identification of taxonomy at a specific level is time consuming and reliant upon expert ecologists. Hence the demand for automated species identification incre­ased over the last two decades. Automation of data classification is primarily focussed on images while incorporating and analysing image data has recently become easier due to developments in computational technology. Research ef­forts on identification of species include specimens’ image processing, extraction of identical features, followed by classifying them into correct categories. In this paper, we discuss recent automated species identification systems, mainly for categorising and evaluating their methods. We reviewed and compared different methods in step by step scheme of automated identification and classification systems of species images. The selection of methods is influenced by many variables such as level of classification, number of training data and complexity of images. The aim of writing this paper is to provide researchers and scientists an extensive background study on work related to automated species identification, focusing on pattern recognition techniques in building such systems for biodiversity studies. (Folia Morphol 2018; 77, 2: 179–193

Localization and classification of paddy field pests using a saliency map and deep convolutional neural network

We present a pipeline for the visual localization and classification of agricultural pest insects by computing a saliency map and applying deep convolutional neural network (DCNN) learning. First, we used a global contrast region-based approach to compute a saliency map for localizing pest insect objects. Bounding squares containing targets were then extracted, resized to a fixed size and used to construct a large standard database called Pest ID. This database was then utilized for self-learning of local image features which were, in turn, used for classification by DCNN. DCNN learning optimized the critical parameters, including size, number and convolutional stride of local receptive fields, dropout ratio and the final loss function. To demonstrate the practical utility of using DCNN, we explored different architectures by shrinking depth and width and found effective sizes that can act as alternatives for practical applications. On the test set of paddy field images, our architectures achieved a mean Accuracy Precision (mAP) of 0.951, a significant improvement over previous methods

Automatic detection of bumblebees using video analysis

In this document, we explore and develop techniques to automatically detect bumblebees flying freely inside a greenhouse, where illumination conditions are left unconstrained, and no artifact is used on their bodies. Specifically, we compare a Viola-Jones classifier and a Support Vector Machine (SVM) classifier to detect the presence of bumblebees. Our results show that the latter has a better classification performance

Insect monitoring radar : maximizing performance and utility

Autonomously-operating radars employing the ‘ZLC configuration’ have been providing long-term datasets of insect flight activity to heights of about 1 km since the late 1990s. A unit of this type operating in Australia has recently received a major upgrade. The aim of the project was to maximize the utility of the radar to entomologists and aeroecologists by providing larger and more continuous datasets and extending observations to 2.5 km. The upgrade was achieved primarily by incorporating modern digital technology, which has enabled much improved data-acquisition, control performance, and data-archiving capacity; by implementing a more comprehensive observing protocol; and by replacing fixed electronic signal-acquisition gates with specially developed software that identifies insect echoes and applies a narrow moving gate that follows them. The upgraded version provides an approximately five-fold increase in hourly sample sizes, a doubling of the duration of observations (from 12 to 24 h per day) and a doubling of the height range over which observations are made. The design considerations (incentives and constraints) that informed the various subsystem implementations are identified, and the necessary compromises are discussed. Observations of the development of a layer echo during a migration by two different insect types are presented as a demonstration of the upgraded unit’s capabilities

Learning from Power Signals: An Automated Approach to Electrical Disturbance Identification Within a Power Transmission System

As power quality becomes a higher priority in the electric utility industry, the amount of disturbance event data continues to grow. Utilities do not have the required personnel to analyze each event by hand. This work presents an automated approach for analyzing power quality events recorded by digital fault recorders and power quality monitors operating within a power transmission system. The automated approach leverages rule-based analytics to examine the time and frequency domain characteristics of the voltage and current signals. Customizable thresholds are set to categorize each disturbance event. The events analyzed within this work include various faults, motor starting, and incipient instrument transformer failure. Analytics for fourteen different event types have been developed. The analytics were tested on 160 signal files and yielded an accuracy of ninety-nine percent. Continuous, nominal signal data analysis is performed using an approach coined as the cyclic histogram. The cyclic histogram process will be integrated into the digital fault recorders themselves to facilitate the detection of subtle signal variations that are too small to trigger a disturbance event and that can occur over hours or days. In addition to reducing memory requirements by a factor of 320, it is anticipated that cyclic histogram processing will aid in identifying incipient events and identifiers. This project is expected to save engineers time by automating the classification of disturbance events and increase the reliability of the transmission system by providing near real time detection and identification of disturbances as well as prevention of problems before they occur.Comment: 18 page

Re-identification and semantic retrieval of pedestrians in video surveillance scenarios

Person re-identification consists of recognizing individuals across different sensors of a camera network. Whereas clothing appearance cues are widely used, other modalities could be exploited as additional information sources, like anthropometric measures and gait. In this work we investigate whether the re-identification accuracy of clothing appearance descriptors can be improved by fusing them with anthropometric measures extracted from depth data, using RGB-Dsensors, in unconstrained settings. We also propose a dissimilaritybased framework for building and fusing multi-modal descriptors of pedestrian images for re-identification tasks, as an alternative to the widely used score-level fusion. The experimental evaluation is carried out on two data sets including RGB-D data, one of which is a novel, publicly available data set that we acquired using Kinect sensors. In this dissertation we also consider a related task, named semantic retrieval of pedestrians in video surveillance scenarios, which consists of searching images of individuals using a textual description of clothing appearance as a query, given by a Boolean combination of predefined attributes. This can be useful in applications like forensic video analysis, where the query can be obtained froma eyewitness report. We propose a general method for implementing semantic retrieval as an extension of a given re-identification system that uses any multiple part-multiple component appearance descriptor. Additionally, we investigate on deep learning techniques to improve both the accuracy of attribute detectors and generalization capabilities. Finally, we experimentally evaluate our methods on several benchmark datasets originally built for re-identification task

Reconhecimento preliminar de espécies de cigarrinhas (Cicadellidae: Cicadellinae) com o uso de algoritmo de aprendizado de máquina e representação esparsa

Este artigo descreve as etapas para o desenvolvimento de um algoritmo de reconhecimento de cigarrinhas (Cicadellidae: Cicadellinae), através do uso de um computador e uma câmera fotográfica digital. São demonstrados os resultados com o uso de extração de características SURF e o desenvolvimento teórico para o uso de representação esparsa e de algoritmos de aprendizado de máquina