The Use of Microfluidics and Dielectrophoresis for Separation, Concentration, and Identification of Bacteria

Typical bacterial analysis involves culturing and visualizing colonies on an array of agar plates. The growth patterns and colors among the array are used to identify the bacteria. For fast growing bacteria such as Escherichia coli, analysis will take one to two days. However, slow growing bacteria such as mycobacteria can take weeks to identify. In addition, there are some species of bacteria that are viable but nonculturable. This lengthy analysis time is unacceptable for life-threatening infections and emergency situations. It is clear that to decrease the analysis of the bacteria, the culturing and growth steps must be avoided. The goal of this research is to design, build, and test a device that could decrease the analysis time of bacteria. Device design accommodates for the varied growth and environmental conditions of expected samples for bacterial analysis. Clinical samples containing bacteria come in a wide variety of forms including urine, saliva, sputum, blood, etc. Each medium will have associated debris and other contaminants that must be isolated from bacteria before identification. This process can be challenging as bacteria and debris can range in size from a fraction of a micrometer to tens of micrometers. In addition, a device must be equipped to accurately identify bacteria regardless of growth conditions. Thus, to decrease the analysis time of bacteria, a device must be capable of isolation, concentration, and identification at a micron level. In this dissertation, a device was designed, built, and tested that incorporates dielectrophoresis for cell sorting and Raman spectroscopy for identification. Using the device, bacteria (1 μm in length) were successfully isolated away from 5 μm polystyrene spheres and Raman spectra of the trapped bacteria were collected. The simultaneous isolation and identification of bacteria from a mixed sample indicates the capability for the cDEP-Raman device to decrease the analysis time of bacteria from clinical samples

Parallel manipulation of individual magnetic microbeads for lab-on-a-chip applications

Many scientists and engineers are turning to lab-on-a-chip systems for cheaper and high throughput analysis of chemical reactions and biomolecular interactions. In this work, we developed several lab-on-a-chip modules based on novel manipulations of individual microbeads inside microchannels. The first manipulation method employs arrays of soft ferromagnetic patterns fabricated inside a microfluidic channel and subjected to an external rotating magnetic field. We demonstrated that the system can be used to assemble individual beads (1-3µm) from a flow of suspended beads into a regular array on the chip, hence improving the integrated electrochemical detection of biomolecules bound to the bead surface. In addition, the microbeads can follow the external magnet rotating at very high speeds and simultaneously orbit around individual soft magnets on the chip. We employed this manipulation mode for efficient sample mixing in continuous microflow. Furthermore, we discovered a simple but effective way of transporting the microbeads on-chip in the rotating field. Selective transport of microbeads with different size was also realized, providing a platform for effective sample separation on a chip. The second manipulation method integrates magnetic and dielectrophoretic manipulations of the same microbeads. The device combines tapered conducting wires and fingered electrodes to generate desirable magnetic and electric fields, respectively. By externally programming the magnetic attraction and dielectrophoretic repulsion forces, out-of-plane oscillation of the microbeads across the channel height was realized. Furthermore, we demonstrated the tweezing of microbeads in liquid with high spatial resolutions by fine-tuning the net force from magnetic attraction and dielectrophoretic repulsion of the beads. The high-resolution control of the out-of-plane motion of the microbeads has led to the invention of massively parallel biomolecular tweezers.Ph.D.Committee Chair: Hesketh, Peter; Committee Member: Allen, Mark; Committee Member: Degertekin, Levent; Committee Member: Lu, Hang; Committee Member: Yoda, Minam

The development of an automated system for electrical characterization of cells using a novel force balance method

Thesis (S.M.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2012.Cataloged from PDF version of thesis.Includes bibliographical references (p. 86-90).Dielectrophoresis (DEP), a cell separation technique based on the dielectric properties, has significantly advanced biomedical research in diverse applications ranging from blood stem cells purification to cancer cells isolation from heterogeneous populations. The ability to accurately measure the dielectric properties of individual cells is not only critical for effective sorting applications, but is also advantageous for enhancing the current knowledge of cell biology. This thesis proposes a novel method: the n-DEP spring, which applies an electrical field gradient upon continuously flowing cells to distinguish them based on their individual DEP properties. Specifically, the method uses the equilibrium position originating from the force balance between hydrodynamic and DEP forces to infer the cellular dielectric properties. For thorough DEP characterization, changing different conditions of cells is an essential but time-consuming process which usually takes hours to days. Especially for DEP characterization of time-sensitive events, such as neutrophil activation or cell apoptosis, short characterization time is required. This thesis describes the automation of the fluidic, optics, and electronics components of the DEP characterization system, which shortens the characterization time within an hour. We first demonstrated the automated DEP characterization of a mammalian cell type in thirty-nine conditions within an hour. Subsequently, we characterized the neutrophils with different activation states and successfully found out the right conditions to discriminate the activated neutrophils and non-activated neutrophils. With this system and method, we now have the potential to rapidly screen through a variety of system parameters, and optimize conditions for effective cell sorting.by Hao-Wei Su.S.M

Quantifying heterogeneity according to deformation of the U937 monocytes and U937-differentiated macrophages using 3D carbon dielectrophoresis in microfluidics

A variety of force fields have thus far been demonstrated to investigate electromechanical properties of cells in a microfluidic platform which, however, are mostly based on fluid shear stress and may potentially cause irreversible cell damage. This work presents dielectric movement and deformation measurements of U937 monocytes and U937-differentiated macrophages in a low conductive medium inside a 3D carbon electrode array. Here, monocytes exhibited a crossover frequency around 150 kHz and presented maximum deformation index at 400 kHz and minimum deformation index at 1 MHz frequencies at 20 Vpeak-peak. Although macrophages were differentiated from monocytes, their crossover frequency was lower than 50 kHz at 10 Vpeak-peak. The change of the deformation index for macrophages was more constant and lower than the monocyte cells. Both dielectric mobility and deformation spectra revealed significant differences between the dielectric responses of U937 monocytes and U937-differentiated macrophages, which share the same origin. This method can be used for label-free, specific, and sensitive single-cell characterization. Besides, damage of the cells by aggressive shear forces can, hence, be eliminated and cells can be used for downstream analysis. Our results showed that dielectric mobility and deformation have a great potential as an electromechanical biomarker to reliably characterize and distinguish differentiated cell populations from their progenitors

Isomotive dielectrophoresis for enhanced analyses of cell subpopulations.

As the relentless dream of creating a true lab-on-a-chip device is closer to realization than ever before, which will be enabled through efficient and reliable sample characterization systems. Dielectrophoresis (DEP) is a term used to describe the motion of dielectric particles/ cells, by means of a non-uniform electric field (AC or DC). Cells of different dielectric properties (i.e., size, interior properties, and membrane properties) will act differently under the influence of dielectrophoretic force. Therefore, DEP can be used as a powerful, robust, and flexible tool for cellular manipulation, separation, characterization, and patterning. However, most recent DEP applications focus on trapping, separation, or sorting particles. The true value of DEP lies in its analytical capabilities which can be achieved by utilizing isomotive dielectrophoresis (isoDEP). In isoDEP, the gradient of the electric field-squared is constant, hence, upon the application of electric field, all particles/cells that share the same dielectric properties will feel the same constant dielectrophoretic force i.e., translate through the micro-channel at the same velocity. However, DEP is not the only acting force upon particles inside an isoDEP device, other electrokinetics, including but not limited to electrothermal hydrodynamics, might act on particles simultaneously. Within this dissertation, electrothermal-based experiments have been conducted to assess the effect of such undesired forces. Also, to maximize the relative DEP force over other forces for a given cell/particle size, design parameters such as microchannel width, height, fabrication materials, lid thickness, and applied electric field must be properly tuned. In this work, scaling law analyses were developed to derive design rules that relate those tunable parameters to achieve the desired dielectrophoretic force for cell analysis. Initial results indicated that for a particle suspended in 10 mS/m media, if the channel width and height are below 10 particle diameters, the electrothermal-driven flow is reduced by ∼ 500 times compared to the 500 µm thick conventional isoDEP device. Also, Replacing glass with silicon as the device’s base for an insulative-based isoDEP, reduces the electrothermal induced flow by ∼ 20 times. Within this dissertation, different device designs and fabrication methods were attempted in order to achieve an isoDEP platform that can characterize and differentiate between live and dead phytoplankton cells suspended in the same solution. Unfortunately, unwanted electrokinetics (predicted by the previously mentioned scaling law analysis) prevented comprehensive isoDEP analysis of phytoplankton cells. Due to isoDEP device limitations and other complications, other techniques were pursued to electrically characterize phytoplankton cells in suspension. An electrochemical-based platform utilizing impedance spectroscopy measurements was used to extract the electrical properties of phytoplankton cells in suspension. Impedance spectroscopy spectra were acquired, and the single-shell model was applied to extract the specific membrane capacitance, cytoplasm permittivity, and conductivity of assumingly spherical cells in suspension utilizing Maxwell’s mixture theory of a controlled volume fraction of cells. The impedance of suspensions of algae were measured at different frequencies ranging from 3 kHz to 10 MHz and impedance values were compared to investigate differences between two types of cells by characterizing their change in cytoplasm permittivity and membrane capacitance. Differentiation between healthy control and nitrogen-depleted cultured algae was attempted. The extracted specific membrane capacitances of Chlamydomonas and Selenastrum were 15:57 ± 3:62 and 40:64 ± 12:6 mF/m2 respectively. Successful differentiation based on the specific membrane capacitance of different algae species was achieved. However, no significant difference was noticed between nitrogen abundant and nitrogen depleted cultures. To investigate the potential of isoDEP for cell analysis, a comparison to existing dielectrophoresis-based electrokinetic techniques was encouraged, including electrorotation (ROT) microfluidic platforms. The ROT microfluidic chip was used to characterize M17, HEK293, T-lymphocytes, and Hela single cells. Through hands-on experience with ROT, the advantages and disadvantages of this approach and isoDEP are apparent. IsoDEP proves to be a good characterization tool for subpopulation cell analysis with potential higher throughput compared to ROT while maintaining simple fabrication and operation processes. To emphasize the role of dielectrophoresis in biology, further studies utilizing the 3DEP analytical system were used to determine the electrical properties of Drosophila melanogaster (Kc167) cells ectopically expressing Late embryogenesis abundant (LEA) proteins from the anhydrobiotic brine shrimp, Artemia franciscana. Dielectrophoretic-based characterization data demonstrates that single expression of two different LEA proteins, AfrLEA3m and AfrLEA6, both increase cytoplasmic conductivity of Kc167 cells to a similar extend above control values. The extracted DEP data supported previously reported data suggesting that AfrLEA3m can interact directly with membranes during water stress. This hypothesis was strengthened using scanning electron microscopy, where cells expressing AfrLEA3m were found to retain their spherical morphology during desiccation, while control cells exhibited a larger variety of shapes in the desiccated state

Microvortices In Droplets: Generation & Applications

The emerging field of droplet microfluidics deals with the manipulation of nL-fL droplets encapsulated within an immiscible carrier phase. The droplets are used as reaction containers for biochemical assays, enabling drastic reduction in assay volumes needed for modern life sciences research. To achieve this, basic laboratory processes such as mixing, detection, and metering must be emulated in the droplet format. Three important unit operations relevant to high throughput screening include 1) the concentration of particles and species within droplets, which is necessary for heterogeneous assays; 2) sensing the biochemical contents of a droplet; and 3) the sorting of droplets based on physical or chemical properties, which is important for single cell and proteomic assays. Currently, particle concentration in droplets requires active components, such as on-chip electrodes or magnets, along with charged or magnetic particles. Similarly, sensing and sorting droplets by chemical composition is based on flow cytometry, which also requires on-chip electrodes, feedback control, and chemical labeling. It is desirable to avoid active field techniques due to complexity, size, and cost constraints, and replace them with more simple and passive techniques. In this thesis, we utilize microvortices, the rotational motion of fluid, to enhance the capabilities of droplet microfluidics in the above three areas. The microvortices are generated using two methods: (i) hydrodynamic recirculation drag and (ii) tensiophoresis. In the first method, species concentration is accomplished by exploiting the shear-induced vortices that occur naturally inside a droplet/plug as it moves through a microchannel. Prior studies utilized these flows for enhancing mixing or interphase mass transfer. This work exploits microvortices together with two other independent phenomena--sedimentation of particles and interfacial adsorption of proteins--to concentrate both types of species at the rear of the droplet, where they can be extracted from the drop. In the latter case, the protein localization at the rear of drop reduces the interfacial tension locally resulting in an asymmetry in the drop shape. Under laminar flow, the shape deformation is deterministic and can serve as a sensitive, label-free indicator of protein concentration in proteomic screening. In the second method, label-free sorting of droplets is accomplished by a novel droplet actuation technique termed Tensiophoresis. A microchemical gradient across the droplet is transduced into a microvortex flow which propels the droplets up the chemical gradient. Using laminar flow to precisely control the gradient, droplets can be sorted by size with 3.3% resolution over a wide turning range. Droplets can be also sorted based on chemical composition because tensiophoresis is inhibited by surface active agents adsorbed on the droplet surface. Studies conducted using Bovine Serum Albumin (BSA) show that the droplet migration velocity scales inversely with protein concentration in the droplet, and migration velocity can be correlated to protein concentration with a 1 femtomole limit of detection. As modern life sciences research becomes increasingly reliant on high throughput workflows, microdroplet technology can meet the growing demand to perform screening at ultra-high throughputs with reduced sample volume. This thesis contributes three important unit operations which expand the capabilities of droplet-based workflows in proteomics, cell biology, and other areas of biomedical research

In Situ Preconcentration by AC Electrokinetics for Rapid and Sensitive Nanoparticle Detection

Reducing cost and time is a major concern in clinical diagnostics. Current molecular diagnostics are multi-step processes that usually take at least several hours or even days to complete multiple reagents delivery, incubations and several washing processes. This highly labor-intensive work and lack of automation could result in reduced reliability and low efficiency. The Laboratory-on-a-chip (LOC), taking advantage of the merger and development of microfluidics and biosensor technology, has shown promise towards a solution for performing analytical tests in a self-contained and compact unit, enabling earlier and decentralized testing. However, challenges are to integrate the fluid regulatory elements on a single platform and to detect target analytes with high sensitivity and selectivity. The goal of this research work is to develop an AC electrokinetic (ACEK) flow through concentrator for in-situ concentration of biomolecules and develop a comprehensive understanding of effects of ACEK flow on the biomolecule transport (in-situ concentration) and their impact on electronic biosensing mechanism and performance, achieving automation and miniaturization. ACEK is a new and promising technique to manipulate micro/bio-fluids and particles. It has many advantages over other techniques for its low applied voltage, portability and compatibility for integration into lab-on-a-chip devices. Numerical study on preconcentration system design in this work has provided an optimization rule for various biosensor designs using ACEK technique. And the microfluidic immunoassay lab-chip designed based on ACET effect has showed promising prospect for accelerated diagnostics. With optimized design of channel geometry, electrode patterns, and properly selected operation condition (ac frequency and voltage), the preconcentration system greatly reduced the reaction time to several minutes instead of several hours, and improved sensitivity of the assay. With the design of immunoassay lab-chip, one can quantitatively study the effect of ACET micropumping and mixing on molecular level binding. Improved sensors with single-chip form factor as a general platform could have a significant impact on a wide-range of biochemical detection and disease diagnostics including pathogen/virus detection, whole blood analysis, immune-screening, gene expression, as well as home land security

Lab‐on‐a‐chip biophotonics: its application to assisted reproductive technologies

With the benefits of automation, sensitivity and precision, microfluidics has enabled complex and otherwise tedious experiments. Lately, lab‐on‐a‐chip (LOC) has proven to be a useful tool for enhancing non‐invasive assisted reproductive technology (ART). Non‐invasive gamete and embryo assessment has largely been through periodic morpohological assessment using optical microscopy and early LOC ART was the same. As we realize that morphological assessment is a poor indication of gamete or embryo health, more advanced biophotonics has emerged in LOC ART to assay for metabolites or gamete separation via optoelectrical tweezers. Off‐chip, even more advanced biophotonics with broad spectrum analysis of metabolites and secretomes has been developed that show even higher accuracy to predicting reproductive potential. The integration of broad spectrum metabolite analysis into LOC ART is an exciting future that merges automation and sensitivity with the already highly accurate and strong predictive power of biophotonics. (© 2012 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/92358/1/650_ftp.pd