Are complex systems hard to evolve?

Evolutionary complexity is here measured by the number of trials/evaluations needed for evolving a logical gate in a non-linear medium. Behavioural complexity of the gates evolved is characterised in terms of cellular automata behaviour. We speculate that hierarchies of behavioural and evolutionary complexities are isomorphic up to some degree, subject to substrate specificity of evolution and the spectrum of evolution parameters

DynamO: A free O(N) general event-driven molecular-dynamics simulator

Molecular-dynamics algorithms for systems of particles interacting through discrete or "hard" potentials are fundamentally different to the methods for continuous or "soft" potential systems. Although many software packages have been developed for continuous potential systems, software for discrete potential systems based on event-driven algorithms are relatively scarce and specialized. We present DynamO, a general event-driven simulation package which displays the optimal O(N) asymptotic scaling of the computational cost with the number of particles N, rather than the O(N log(N)) scaling found in most standard algorithms. DynamO provides reference implementations of the best available event-driven algorithms. These techniques allow the rapid simulation of both complex and large (>10^6 particles) systems for long times. The performance of the program is benchmarked for elastic hard sphere systems, homogeneous cooling and sheared inelastic hard spheres, and equilibrium Lennard-Jones fluids. This software and its documentation are distributed under the GNU General Public license and can be freely downloaded from http://marcusbannerman.co.uk/dynamo

Hamiltonian tomography of dissipative systems under limited access: A biomimetic case study

The identification of parameters in the Hamiltonian that describes complex many-body quantum systems is generally a very hard task. Recent attention has focused on such problems of Hamiltonian tomography for networks constructed with two-level systems. For open quantum systems, the fact that injected signals are likely to decay before they accumulate sufficient information for parameter estimation poses additional challenges. In this paper, we consider use of the gateway approach to Hamiltonian tomography \cite{Burgarth2009,Burgarth2009a} to complex quantum systems with a limited set of state preparation and measurement probes. We classify graph properties of networks for which the Hamiltonian may be estimated under equivalent conditions on state preparation and measurement. We then examine the extent to which the gateway approach may be applied to estimation of Hamiltonian parameters for network graphs with non-trivial topologies mimicking biomolecular systems.Comment: 6 page

Quantum Annealing and Analog Quantum Computation

We review here the recent success in quantum annealing, i.e., optimization of the cost or energy functions of complex systems utilizing quantum fluctuations. The concept is introduced in successive steps through the studies of mapping of such computationally hard problems to the classical spin glass problems. The quantum spin glass problems arise with the introduction of quantum fluctuations, and the annealing behavior of the systems as these fluctuations are reduced slowly to zero. This provides a general framework for realizing analog quantum computation.Comment: 22 pages, 7 figs (color online); new References Added. Reviews of Modern Physics (in press

Design thinking support: information systems versus reasoning

Numerous attempts have been made to conceive and implement appropriate information systems to support architectural designers in their creative design thinking processes. These information systems aim at providing support in very diverse ways: enabling designers to make diverse kinds of visual representations of a design, enabling them to make complex calculations and simulations which take into account numerous relevant parameters in the design context, providing them with loads of information and knowledge from all over the world, and so forth. Notwithstanding the continued efforts to develop these information systems, they still fail to provide essential support in the core creative activities of architectural designers. In order to understand why an appropriately effective support from information systems is so hard to realize, we started to look into the nature of design thinking and on how reasoning processes are at play in this design thinking. This investigation suggests that creative designing rests on a cyclic combination of abductive, deductive and inductive reasoning processes. Because traditional information systems typically target only one of these reasoning processes at a time, this could explain the limited applicability and usefulness of these systems. As research in information technology is increasingly targeting the combination of these reasoning modes, improvements may be within reach for design thinking support by information systems

Quantum diffusion with disorder, noise and interaction

Disorder, noise and interaction play a crucial role in the transport properties of real systems, but they are typically hard to control and study both theoretically and experimentally, especially in the quantum case. Here we explore a paradigmatic problem, the diffusion of a wavepacket, by employing ultra-cold atoms in a disordered lattice with controlled noise and tunable interaction. The presence of disorder leads to Anderson localization, while both interaction and noise tend to suppress localization and restore transport, although with completely different mechanisms. When only noise or interaction are present we observe a diffusion dynamics that can be explained by existing microscopic models. When noise and interaction are combined, we observe instead a complex anomalous diffusion. By combining experimental measurements with numerical simulations, we show that such anomalous behavior can be modeled with a generalized diffusion equation, in which the noise- and interaction-induced diffusions enter in an additive manner. Our study reveals also a more complex interplay between the two diffusion mechanisms in regimes of strong interaction or narrowband noise.Comment: 11 pages, 10 figure