MPICH-G2: A Grid-Enabled Implementation of the Message Passing Interface

Application development for distributed computing "Grids" can benefit from tools that variously hide or enable application-level management of critical aspects of the heterogeneous environment. As part of an investigation of these issues, we have developed MPICH-G2, a Grid-enabled implementation of the Message Passing Interface (MPI) that allows a user to run MPI programs across multiple computers, at the same or different sites, using the same commands that would be used on a parallel computer. This library extends the Argonne MPICH implementation of MPI to use services provided by the Globus Toolkit for authentication, authorization, resource allocation, executable staging, and I/O, as well as for process creation, monitoring, and control. Various performance-critical operations, including startup and collective operations, are configured to exploit network topology information. The library also exploits MPI constructs for performance management; for example, the MPI communicator construct is used for application-level discovery of, and adaptation to, both network topology and network quality-of-service mechanisms. We describe the MPICH-G2 design and implementation, present performance results, and review application experiences, including record-setting distributed simulations.Comment: 20 pages, 8 figure

Java on Networks of Workstations (JavaNOW): A Parallel Computing Framework Inspired by Linda and the Message Passing Interface (MPI)

Networks of workstations are a dominant force in the distributed computing arena, due primarily to the excellent price/performance ratio of such systems when compared to traditionally massively parallel architectures. It is therefore critical to develop programming languages and environments that can help harness the raw computational power available on these systems. In this article, we present JavaNOW (Java on Networks of Workstations), a Java‐based framework for parallel programming on networks of workstations. It creates a virtual parallel machine similar to the MPI (Message Passing Interface) model, and provides distributed associative shared memory similar to the Linda memory model but with a richer set of primitive operations. JavaNOW provides a simple yet powerful framework for performing computation on networks of workstations. In addition to the Linda memory model, it provides for shared objects, implicit multithreading, implicit synchronization, object dataflow, and collective communications similar to those defined in MPI. JavaNOW is also a component of the Computational Neighborhood, a Java‐enabled suite of services for desktop computational sharing. The intent of JavaNOW is to present an environment for parallel computing that is both expressive and reliable and ultimately can deliver good to excellent performance. As JavaNOW is a work in progress, this article emphasizes the expressive potential of the JavaNOW environment and presents preliminary performance results only

Cluster Computing in the Classroom: Topics, Guidelines, and Experiences

With the progress of research on cluster computing, more and more universities have begun to offer various courses covering cluster computing. A wide variety of content can be taught in these courses. Because of this, a difficulty that arises is the selection of appropriate course material. The selection is complicated by the fact that some content in cluster computing is also covered by other courses such as operating systems, networking, or computer architecture. In addition, the background of students enrolled in cluster computing courses varies. These aspects of cluster computing make the development of good course material difficult. Combining our experiences in teaching cluster computing in several universities in the USA and Australia and conducting tutorials at many international conferences all over the world, we present prospective topics in cluster computing along with a wide variety of information sources (books, software, and materials on the web) from which instructors can choose. The course material described includes system architecture, parallel programming, algorithms, and applications. Instructors are advised to choose selected units in each of the topical areas and develop their own syllabus to meet course objectives. For example, a full course can be taught on system architecture for core computer science students. Or, a course on parallel programming could contain a brief coverage of system architecture and then devote the majority of time to programming methods. Other combinations are also possible. We share our experiences in teaching cluster computing and the topics we have chosen depending on course objectives

An Autonomic Cross-Platform Operating Environment for On-Demand Internet Computing

The Internet has evolved into a global and ubiquitous communication medium interconnecting powerful application servers, diverse desktop computers and mobile notebooks. Along with recent developments in computer technology, such as the convergence of computing and communication devices, the way how people use computers and the Internet has changed people´s working habits and has led to new application scenarios. On the one hand, pervasive computing, ubiquitous computing and nomadic computing become more and more important since different computing devices like PDAs and notebooks may be used concurrently and alternately, e.g. while the user is on the move. On the other hand, the ubiquitous availability and pervasive interconnection of computing systems have fostered various trends towards the dynamic utilization and spontaneous collaboration of available remote computing resources, which are addressed by approaches like utility computing, grid computing, cloud computing and public computing. From a general point of view, the common objective of this development is the use of Internet applications on demand, i.e. applications that are not installed in advance by a platform administrator but are dynamically deployed and run as they are requested by the application user. The heterogeneous and unmanaged nature of the Internet represents a major challenge for the on demand use of custom Internet applications across heterogeneous hardware platforms, operating systems and network environments. Promising remedies are autonomic computing systems that are supposed to maintain themselves without particular user or application intervention. In this thesis, an Autonomic Cross-Platform Operating Environment (ACOE) is presented that supports On Demand Internet Computing (ODIC), such as dynamic application composition and ad hoc execution migration. The approach is based on an integration middleware called crossware that does not replace existing middleware but operates as a self-managing mediator between diverse application requirements and heterogeneous platform configurations. A Java implementation of the Crossware Development Kit (XDK) is presented, followed by the description of the On Demand Internet Computing System (ODIX). The feasibility of the approach is shown by the implementation of an Internet Application Workbench, an Internet Application Factory and an Internet Peer Federation. They illustrate the use of ODIX to support local, remote and distributed ODIC, respectively. Finally, the suitability of the approach is discussed with respect to the support of ODIC

Image processing methods and architectures in diagnostic pathology.

Grid technology has enabled the clustering and the efficient and secure access to and interaction among a wide variety of geographically distributed resources such as: supercomputers, storage systems, data sources, instruments and special devices and services. Their main applications include large-scale computational and data intensive problems in science and engineering. General grid structures and methodologies for both software and hardware in image analysis for virtual tissue-based diagnosis has been considered in this paper. This methods are focus on the user level middleware. The article describes the distributed programming system developed by the authors for virtual slide analysis in diagnostic pathology. The system supports different image analysis operations commonly done in anatomical pathology and it takes into account secured aspects and specialized infrastructures with high level services designed to meet application requirements. Grids are likely to have a deep impact on health related applications, and therefore they seem to be suitable for tissue-based diagnosis too. The implemented system is a joint application that mixes both Web and Grid Service Architecture around a distributed architecture for image processing. It has shown to be a successful solution to analyze a big and heterogeneous group of histological images under architecture of massively parallel processors using message passing and non-shared memory

Communication in GLOBE: An Object-Based Worldwide Operating System

Current paradigms for interprocess communication are not sufficient to describe the exchange of information at an adequate level of abstraction. They are either too lowlevel, or their implementations cannot meet performance requirements. As an alternative, we propose distributed shared objects as a unifying concept. These objects offer user-defined operations on shared state, but allow for efficient implementations through replication and distribution of state. In contrast to other object-based models, these implementation aspects are completely hidden from applications. 1 Introduction In the 1960s and 1970s, the computing universe was dominated by mainframes and minicomputers that ran batch and timesharing operating systems. Typical examples of these systems were OS/360 and UNIX. These system were primarily concerned with the efficient and secure sharing of the resources of a single machine among many competing users. In the 1980s, personal computers became popular. These machines h..

A Policy-Based Resource Brokering Environment for Computational Grids

With the advances in networking infrastructure in general, and the Internet in particular, we can build grid environments that allow users to utilize a diverse set of distributed and heterogeneous resources. Since the focus of such environments is the efficient usage of the underlying resources, a critical component is the resource brokering environment that mediates the discovery, access and usage of these resources. With the consumer\u27s constraints, provider\u27s rules, distributed heterogeneous resources and the large number of scheduling choices, the resource brokering environment needs to decide where to place the user\u27s jobs and when to start their execution in a way that yields the best performance for the user and the best utilization for the resource provider. As brokering and scheduling are very complicated tasks, most current resource brokering environments are either specific to a particular grid environment or have limited features. This makes them unsuitable for large applications with heterogeneous requirements. In addition, most of these resource brokering environments lack flexibility. Policies at the resource-, application-, and system-levels cannot be specified and enforced to provide commitment to the guaranteed level of allocation that can help in attracting grid users and contribute to establishing credibility for existing grid environments. In this thesis, we propose and prototype a flexible and extensible Policy-based Resource Brokering Environment (PROBE) that can be utilized by various grid systems. In designing PROBE, we follow a policy-based approach that provides PROBE with the intelligence to not only match the user\u27s request with the right set of resources, but also to assure the guaranteed level of the allocation. PROBE looks at the task allocation as a Service Level Agreement (SLA) that needs to be enforced between the resource provider and the resource consumer. The policy-based framework is useful in a typical grid environment where resources, most of the time, are not dedicated. In implementing PROBE, we have utilized a layered architecture and façade design patterns. These along with the well-defined API, make the framework independent of any architecture and allow for the incorporation of different types of scheduling algorithms, applications and platform adaptors as the underlying environment requires. We have utilized XML as a base for all the specification needs. This provides a flexible mechanism to specify the heterogeneous resources and user\u27s requests along with their allocation constraints. We have developed XML-based specifications by which high-level internal structures of resources, jobs and policies can be specified. This provides interoperability in which a grid system can utilize PROBE to discover and use resources controlled by other grid systems. We have implemented a prototype of PROBE to demonstrate its feasibility. We also describe a test bed environment and the evaluation experiments that we have conducted to demonstrate the usefulness and effectiveness of our approach