On the Influence of the instance structure for metaheuristic performances -- Application to a graph drawing problem

International audienceMetaheuristics are now so common that for some classical hard combinatorial problems, there exist more than ten variants. Thus, the issue of comparing optimization methods is crucial. In this paper, we focus on one aspect of this question: the impact of the choice of the test instances on the metaheuristic performances and the possible link with the fitness landscape structure. We base our experimental framework on the arc crossing minimization problem for layered digraphs. We compare a hybridized genetic algorithm and a multistart descent which are among the best approaches to this problem. We worked on two instance families with various sizes and structural complexities: small graphs which are easy to draw on a standard size support, and large graphs specifically built for our experiments. We show that, for the smallest instances, there is no significant difference between methods whereas for graphs similar to those classically used nowadays in applications the genetic algorithm is better, and for the largest graphs (with a scaling factor up to $10^{300}$), the multistart descent is the best method. These results suggest that for ``structured'' fitness landscapes associated with real-life instances the GA exploits its implicit learning. On the other hand for very large landscapes with probably numerous local optima, only one exploration on a larger scale can be provided by local searches from a random starting point, cheap in computing effort

A Tabu Search Based Approach for Graph Layout

This paper describes an automated tabu search based method for drawing general graph layouts with straight lines. To our knowledge, this is the first time tabu methods have been applied to graph drawing. We formulated the task as a multi-criteria optimization problem with a number of metrics which are used in a weighted fitness function to measure the aesthetic quality of the graph layout. The main goal of this work is to speed up the graph layout process without sacrificing layout quality. To achieve this, we use a tabu search based method that goes through a predefined number of iterations to minimize the value of the fitness function. Tabu search always chooses the best solution in the neighbourhood. This may lead to cycling, so a tabu list is used to store moves that are not permitted, meaning that the algorithm does not choose previous solutions for a set period of time. We evaluate the method according to the time spent to draw a graph and the quality of the drawn graphs. We give experimental results applied on random graphs and we provide statistical evidence that our method outperforms a fast search-based drawing method (hill climbing) in execution time while it produces comparably good graph layouts.We also demonstrate the method on real world graph datasets to show that we can reproduce similar results in a real world setting

Logic learning and optimized drawing: two hard combinatorial problems

Nowadays, information extraction from large datasets is a recurring operation in countless fields of applications. The purpose leading this thesis is to ideally follow the data flow along its journey, describing some hard combinatorial problems that arise from two key processes, one consecutive to the other: information extraction and representation. The approaches here considered will focus mainly on metaheuristic algorithms, to address the need for fast and effective optimization methods. The problems studied include data extraction instances, as Supervised Learning in Logic Domains and the Max Cut-Clique Problem, as well as two different Graph Drawing Problems. Moreover, stemming from these main topics, other additional themes will be discussed, namely two different approaches to handle Information Variability in Combinatorial Optimization Problems (COPs), and Topology Optimization of lightweight concrete structures

A Unified Framework for Integer Programming Formulation of Graph Matching Problems

Graph theory has been a powerful tool in solving difficult and complex problems arising in all disciplines. In particular, graph matching is a classical problem in pattern analysis with enormous applications. Many graph problems have been formulated as a mathematical program then solved using exact, heuristic and/or approximated-guaranteed procedures. On the other hand, graph theory has been a powerful tool in visualizing and understanding of complex mathematical programming problems, especially integer programs. Formulating a graph problem as a natural integer program (IP) is often a challenging task. However, an IP formulation of the problem has many advantages. Several researchers have noted the need for natural IP formulation of graph theoretic problems. The aim of the present study is to provide a unified framework for IP formulation of graph matching problems. Although there are many surveys on graph matching problems, however, none is concerned with IP formulation. This paper is the first to provide a comprehensive IP formulation for such problems. The framework includes variety of graph optimization problems in the literature. While these problems have been studied by different research communities, however, the framework presented here helps to bring efforts from different disciplines to tackle such diverse and complex problems. We hope the present study can significantly help to simplify some of difficult problems arising in practice, especially in pattern analysis

Solutions to decision-making problems in management engineering using molecular computational algorithms and experimentations

制度:新 ; 報告番号:甲3368号 ; 学位の種類:博士(工学) ; 授与年月日:2011/5/23 ; 早大学位記番号:新568

Data Mining Using the Crossing Minimization Paradigm

Our ability and capacity to generate, record and store multi-dimensional, apparently unstructured data is increasing rapidly, while the cost of data storage is going down. The data recorded is not perfect, as noise gets introduced in it from different sources. Some of the basic forms of noise are incorrect recording of values and missing values. The formal study of discovering useful hidden information in the data is called Data Mining. Because of the size, and complexity of the problem, practical data mining problems are best attempted using automatic means. Data Mining can be categorized into two types i.e. supervised learning or classification and unsupervised learning or clustering. Clustering only the records in a database (or data matrix) gives a global view of the data and is called one-way clustering. For a detailed analysis or a local view, biclustering or co-clustering or two-way clustering is required involving the simultaneous clustering of the records and the attributes. In this dissertation, a novel fast and white noise tolerant data mining solution is proposed based on the Crossing Minimization (CM) paradigm; the solution works for one-way as well as two-way clustering for discovering overlapping biclusters. For decades the CM paradigm has traditionally been used for graph drawing and VLSI (Very Large Scale Integration) circuit design for reducing wire length and congestion. The utility of the proposed technique is demonstrated by comparing it with other biclustering techniques using simulated noisy, as well as real data from Agriculture, Biology and other domains. Two other interesting and hard problems also addressed in this dissertation are (i) the Minimum Attribute Subset Selection (MASS) problem and (ii) Bandwidth Minimization (BWM) problem of sparse matrices. The proposed CM technique is demonstrated to provide very convincing results while attempting to solve the said problems using real public domain data. Pakistan is the fourth largest supplier of cotton in the world. An apparent anomaly has been observed during 1989-97 between cotton yield and pesticide consumption in Pakistan showing unexpected periods of negative correlation. By applying the indigenous CM technique for one-way clustering to real Agro-Met data (2001-2002), a possible explanation of the anomaly has been presented in this thesis

Kreuzungen in Cluster-Level-Graphen

Clustered graphs are an enhanced graph model with a recursive clustering of the vertices according to a given nesting relation. This prime technique for expressing coherence of certain parts of the graph is used in many applications, such as biochemical pathways and UML class diagrams. For directed clustered graphs usually level drawings are used, leading to clustered level graphs. In this thesis we analyze the interrelation of clusters and levels and their influence on edge crossings and cluster/edge crossings.Cluster-Graphen sind ein erweitertes Graph-Modell mit einem rekursiven Clustering der Knoten entsprechend einer gegebenen Inklusionsrelation. Diese bedeutende Technik um Zusammengehörigkeit bestimmter Teile des Graphen auszudrücken wird in vielen Anwendungen benutzt, etwa biochemischen Reaktionsnetzen oder UML Klassendiagrammen. Für gerichtete Cluster-Graphen werden üblicherweise Level-Zeichnungen verwendet, was zu Cluster-Level-Graphen führt. Diese Arbeit analysiert den Zusammenhang zwischen Clustern und Level und deren Auswirkungen auf Kantenkreuzungen und Cluster/Kanten-Kreuzungen

Zyklische Levelzeichnungen gerichteter Graphen

The Sugiyama framework proposed in the seminal paper of 1981 is one of the most important algorithms in graph drawing and is widely used for visualizing directed graphs. In its common version, it draws graphs hierarchically and, hence, maps the topological direction to a geometric direction. However, such a hierarchical layout is not possible if the graph contains cycles, which have to be destroyed in a preceding step. In certain application and problem settings, e.g., bio sciences or periodic scheduling problems, it is important that the cyclic structure of the input graph is preserved and clearly visible in drawings. Sugiyama et al. also suggested apart from the nowadays standard horizontal algorithm a cyclic version they called recurrent hierarchies. However, this cyclic drawing style has not received much attention since. In this thesis we consider such cyclic drawings and investigate the Sugiyama framework for this new scenario. As our goal is to visualize cycles directly, the first phase of the Sugiyama framework, which is concerned with removing such cycles, can be neglected. The cyclic structure of the graph leads to new problems in the remaining phases, however, for which solutions are proposed in this thesis. The aim is a complete adaption of the Sugiyama framework for cyclic drawings. To complement our adaption of the Sugiyama framework, we also treat the problem of cyclic level planarity and present a linear time cyclic level planarity testing and embedding algorithm for strongly connected graphs

Graph drawing using tabu search coupled with path relinking

Graph drawing, or the automatic layout of graphs, is a challenging problem. There are several search based methods for graph drawing which are based on optimizing an objective function which is formed from a weighted sum of multiple criteria. In this paper, we propose a new neighbourhood search method which uses a tabu search coupled with path relinking to optimize such objective functions for general graph layouts with undirected straight lines. To our knowledge, before our work, neither of these methods have been previously used in general multi-criteria graph drawing. Tabu search uses a memory list to speed up searching by avoiding previously tested solutions, while the path relinking method generates new solutions by exploring paths that connect high quality solutions. We use path relinking periodically within the tabu search procedure to speed up the identification of good solutions. We have evaluated our new method against the commonly used neighbourhood search optimization techniques: hill climbing and simulated annealing. Our evaluation examines the quality of the graph layout (objective function’s value) and the speed of layout in terms of the number of evaluated solutions required to draw a graph. We also examine the relative scalability of each method. Our experimental results were applied to both random graphs and a real-world dataset. We show that our method outperforms both hill climbing and simulated annealing by producing a better layout in a lower number of evaluated solutions. In addition, we demonstrate that our method has greater scalability as it can layout larger graphs than the state-of-the-art neighbourhood search methods. Finally, we show that similar results can be produced in a real world setting by testing our method against a standard public graph dataset