Optimal Approximation Algorithms for Multi-agent Combinatorial Problems with Discounted Price Functions

Submodular functions are an important class of functions in combinatorial optimization which satisfy the natural properties of decreasing marginal costs. The study of these functions has led to strong structural properties with applications in many areas. Recently, there has been significant interest in extending the theory of algorithms for optimizing combinatorial problems (such as network design problem of spanning tree) over submodular functions. Unfortunately, the lower bounds under the general class of submodular functions are known to be very high for many of the classical problems. In this paper, we introduce and study an important subclass of submodular functions, which we call discounted price functions. These functions are succinctly representable and generalize linear cost functions. In this paper we study the following fundamental combinatorial optimization problems: Edge Cover, Spanning Tree, Perfect Matching and Shortest Path, and obtain tight upper and lower bounds for these problems. The main technical contribution of this paper is designing novel adaptive greedy algorithms for the above problems. These algorithms greedily build the solution whist rectifying mistakes made in the previous steps

Combinatorial RNA Design: Designability and Structure-Approximating Algorithm

In this work, we consider the Combinatorial RNA Design problem, a minimal instance of the RNA design problem which aims at finding a sequence that admits a given target as its unique base pair maximizing structure. We provide complete characterizations for the structures that can be designed using restricted alphabets. Under a classic four-letter alphabet, we provide a complete characterization of designable structures without unpaired bases. When unpaired bases are allowed, we provide partial characterizations for classes of designable/undesignable structures, and show that the class of designable structures is closed under the stutter operation. Membership of a given structure to any of the classes can be tested in linear time and, for positive instances, a solution can be found in linear time. Finally, we consider a structure-approximating version of the problem that allows to extend bands (helices) and, assuming that the input structure avoids two motifs, we provide a linear-time algorithm that produces a designable structure with at most twice more base pairs than the input structure.Comment: CPM - 26th Annual Symposium on Combinatorial Pattern Matching, Jun 2015, Ischia Island, Italy. LNCS, 201

On the noncommutative geometry of tilings

This is a chapter in an incoming book on aperiodic order. We review results about the topology, the dynamics, and the combinatorics of aperiodically ordered tilings obtained with the tools of noncommutative geometry