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    Approximate Hamming distance in a stream

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    We consider the problem of computing a (1+ϵ)(1+\epsilon)-approximation of the Hamming distance between a pattern of length nn and successive substrings of a stream. We first look at the one-way randomised communication complexity of this problem, giving Alice the first half of the stream and Bob the second half. We show the following: (1) If Alice and Bob both share the pattern then there is an O(ϵ4log2n)O(\epsilon^{-4} \log^2 n) bit randomised one-way communication protocol. (2) If only Alice has the pattern then there is an O(ϵ2nlogn)O(\epsilon^{-2}\sqrt{n}\log n) bit randomised one-way communication protocol. We then go on to develop small space streaming algorithms for (1+ϵ)(1+\epsilon)-approximate Hamming distance which give worst case running time guarantees per arriving symbol. (1) For binary input alphabets there is an O(ϵ3nlog2n)O(\epsilon^{-3} \sqrt{n} \log^{2} n) space and O(ϵ2logn)O(\epsilon^{-2} \log{n}) time streaming (1+ϵ)(1+\epsilon)-approximate Hamming distance algorithm. (2) For general input alphabets there is an O(ϵ5nlog4n)O(\epsilon^{-5} \sqrt{n} \log^{4} n) space and O(ϵ4log3n)O(\epsilon^{-4} \log^3 {n}) time streaming (1+ϵ)(1+\epsilon)-approximate Hamming distance algorithm.Comment: Submitted to ICALP' 201
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